mRNA_C-linearis_contig11.1308.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1308.1
Unique NamemRNA_C-linearis_contig11.1308.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: D7FS36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS36_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 6.430e-118
Identity = 223/350 (63.71%), Postives = 248/350 (70.86%), Query Frame = 1
Query:  262 HSEQKAGFKPPLPLEDDGFKVDMTALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIA--DDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDG-----GSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEA--------QIVLGDRPVEVTLKRAW------------------EALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXE------------AAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            HSEQK G++PP PLEDDG  VD++ LQDL+ESG LQVA+RP DY+DRRSDGYTEPLE+YVLGTSH S+TSAGHVRRV+ AVRPQSVVVELCKSRAGLMMP+A  ++ G +NPL MSGE+FASSLARSIRIGGQSTALLRAALAWAARGSM+DG       GEG T     +A MYGDFRAAKEGAEEA          Q+ +G   V      AW                     +F  R    RS      + +G     XXXXXXXXX             A +LR+SVSDGEVGED LEDLI+MLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR
Sbjct:   74 HSEQKTGYQPPSPLEDDGHVVDLSLLQDLLESGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASETSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGSNNPLAMSGENFASSLARSIRIGGQSTALLRAALAWAARGSMADGQETMRSGGEGTT--TPTSAVMYGDFRAAKEGAEEARIACSGFGLLQVQVGSWTVVWIYGMAWYEDHRGGLTSDSAASTWYSPSTFSRRERTFRSRGSACQECSGSSDTQXXXXXXXXXXXXXXXXXXNSGAAEKLRKSVSDGEVGEDALEDLISMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 421          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A6H5L0L6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L6_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 9.080e-114
Identity = 187/243 (76.95%), Postives = 208/243 (85.60%), Query Frame = 1
Query:  226 SGGGGDGEQHLKHSEQKAGFKPPLPLEDDGFKVDMTALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIA--DDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDG-----GSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAG 933
            +GGGG G + + HSEQK G++PP PLEDDG  VD++ LQDL++SG LQVA+RP DY+DRRSDGYTEPLE+YVLGTSH S+TSAGHVRRV+ AVRPQSVVVELCKSRAGLMMP+A   + G +NPL MSGE+FASSLARSIRIGGQSTALLRAALAWAARGSM+DG       GEG T     +A MYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALS GERLDLA SLVQLAFQR+G
Sbjct:   62 AGGGGGGVEGV-HSEQKTGYQPPSPLEDDGHVVDLSLLQDLLDSGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASETSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPESEAGANNPLAMSGENFASSLARSIRIGGQSTALLRAALAWAARGSMADGQETIRSGGEGTT--TPTSAVMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSVGERLDLALSLVQLAFQRSG 301          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A2K1IEV6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IEV6_PHYPA)

HSP 1 Score: 211 bits (536), Expect = 8.400e-61
Identity = 127/284 (44.72%), Postives = 177/284 (62.32%), Query Frame = 1
Query:  337 LQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIAD--DV--GESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            L DLVE G L + KRP DY +RRSDGY EP  +Y++GT+H+S  SA  V RV+ AV+P++VV+ELC+SRAG+M   A   DV  G  N + MSG++F S++ RS+++GG+S   LR  LA            G  K  + +A  A   +FRAA++ AE   AQIVLGDRP+E+TL+RAW +L + ERL    +LVQ    +                E+ ++ +S       +D L  +   L+ RFPS++ PLI+ERD+YLAW+LKRS+AV G +RVVGVVG+
Sbjct:   87 LMDLVEDGTLVIVKRPPDYVERRSDGYVEPEVVYIVGTAHMSKLSANQVTRVINAVQPENVVIELCRSRAGIMYDEAQTSDVKQGSKNLMSMSGDNFGSAVGRSLKLGGRSALALRLLLA------------GVSKRLSASAGVATGEEFRAARKAAEALGAQIVLGDRPIEITLQRAWRSLKWDERLRFGATLVQGMSDK----------NLNVSEESLQMLKS-------DDALSAMFGELSSRFPSLMQPLIHERDMYLAWSLKRSKAVNGCKRVVGVVGK 341          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A176VHS1_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VHS1_MARPO)

HSP 1 Score: 206 bits (525), Expect = 4.820e-59
Identity = 131/294 (44.56%), Postives = 174/294 (59.18%), Query Frame = 1
Query:  337 LQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLM-----MPIADDVG---------ESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            L DLVE+G L V KRP DY +RRSDGY EP  ++V+GT+H+S  SA  V RV++AVRP++VVVELC+SRAG+M     +  +D V          E N + MSGE+F ++++RS+R+GG+S   LR  L   +       G   G+            +FRAA+  AEE  AQ+VLGDRP+EVTLKRAWEAL + ER  LA   VQ                     +A+E    V      +D L  + + +  R PS++ PLIYERD+YLAW+LKRS+AV G  RVVGVVG+
Sbjct:  112 LMDLVENGTLVVVKRPKDYVERRSDGYREPEMVFVVGTAHMSVVSATEVERVVKAVRPENVVVELCRSRAGIMYDEPTIKGSDSVDGEEIRGTQKEKNLMSMSGENFGAAMSRSLRLGGRSALALRLLLGGLSEKLSKSAGVSTGE------------EFRAARRAAEEIGAQLVLGDRPIEVTLKRAWEALQWDERFRLAGIFVQAM--------------NSSKLDASE---EVLAALKSDDALSQMFSEMGTRLPSLLQPLIYERDMYLAWSLKRSKAVNGCSRVVGVVGK 376          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A7S1X1G4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X1G4_9CHLO)

HSP 1 Score: 202 bits (514), Expect = 2.620e-58
Identity = 121/285 (42.46%), Postives = 174/285 (61.05%), Query Frame = 1
Query:  337 LQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLM-----MPIADDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            L DLVE+G L V  RP DY +RR DGY EP E++++GT+H+S  S   V RV+ AV+PQ+VVVELCKSRAG+M        +D V  +N +G+SG SF +++ RS R+GGQS  +LR  LA  +    +     E ++GA         + +AAK  A   +AQ+VLGDRP+E+TL+RAW +L+F E+L L   L++  FQ                     L  ++ +    +D +  ++   A+ +P+++ PLI+ERDLYLAW+LKRS+AV G  RVVGVVG+
Sbjct:   13 LADLVEAGVLHVVLRPADYKERRVDGYQEPKEIFLVGTAHMSKRSCDDVARVIAAVKPQNVVVELCKSRAGVMYEDEAQSESDRVKATNQMGLSGSSFLAAVGRSARLGGQSAFILRVLLAQVSNRFSAQV---EVQSGA---------EMKAAKIAASHVQAQVVLGDRPIEITLQRAWASLTFREKLQLTSYLIRALFQPMNQ---------------VSLDDALIEELKQDDAVSAMLKQFADAYPNLLKPLIFERDLYLAWSLKRSKAVNGTERVVGVVGK 270          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A836CI89_9STRA (TraB family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI89_9STRA)

HSP 1 Score: 192 bits (487), Expect = 8.240e-55
Identity = 132/311 (42.44%), Postives = 168/311 (54.02%), Query Frame = 1
Query:  259 KHSEQKAGFKPPLPLEDDGFKVDMTALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIADDVGESN----PLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYG-DFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            +HSEQ+ G+ PP P+ DDG  VD  AL DL                                        SA  V RV+R V+PQSVVVELC+SR GLMM   ++ G +N    PLG+SG +   +L RS+++GGQ   LLRAALA A                A A      G DFRAA   A   +A+IVLGDRP+E+TLKRAW ALS  E++ LA  L   AF   G              E +EL  +   G V +DV++ L+  L+ +FP++V PL++ERD YLAW+LKRSRAVCG+ RVVGVVGR
Sbjct:   26 QHSEQRQGYLPPKPVLDDGHVVDTAALDDL---------------------------------------QSASDVARVIREVQPQSVVVELCRSRVGLMME--EEPGAANAPASPLGLSGGNLQEALQRSVQVGGQGMVLLRAALAHAT---------------ASATETVRPGLDFRAANACATALDAEIVLGDRPIEITLKRAWAALSTAEKVRLAAGL---AFAAVGGGKAVSG-------EGSELLAAARGGRVDDDVVDALMAKLSRQFPALVAPLVHERDAYLAWSLKRSRAVCGKSRVVGVVGR 270          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A0D6R8Y6_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R8Y6_ARACU)

HSP 1 Score: 191 bits (484), Expect = 4.890e-53
Identity = 131/338 (38.76%), Postives = 186/338 (55.03%), Query Frame = 1
Query:  214 RAGKSGGGGD----GEQHLKHSEQKAGFKPPLPLEDDGFKVDM-TALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIA---------DDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVG---EDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            RAG +GGGG      +  +K       F+     E  G   +M   L DL E G + V K+  DY +RR+DGY EP  + VLGTSHVS  SA +V RVLRAVRPQ+VVVELC+SR G+M             +   ++N   M GESF  ++ RS+ +GGQS   LR  LA  ++   S  G+  G             +F AA++ +EE  AQIVLGDRP+E+TL+RAW++L + E++ L  +L+Q  +  +                       +S+G      +D L  +   L+  +PS++ PLI+ERD+YLAW+LKRS+AV G + VVG++GR
Sbjct:   46 RAGNNGGGGGRVGVAKVAVKAPPSDFDFRRETRQETAGIIEEMYPELSDLAEEGEIVVVKKRADYVERRTDGYVEPDLIIVLGTSHVSRDSAANVERVLRAVRPQNVVVELCRSRVGIMYSSKSTHSIKLQPEKKQKTNLFSMGGESFLGAMGRSLTLGGQSGLALRLLLAGFSQKMSSQVGTSIGA------------EFCAARKISEEIGAQIVLGDRPIEITLERAWKSLKWTEQVKLVSTLLQGIYSTS---------------------LCISEGNFKMKTDDALSTMFRELSMFYPSLLQPLIHERDVYLAWSLKRSKAVNGSKIVVGIIGR 350          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A8J9SBL0_9CHLO (TraB domain-containing protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SBL0_9CHLO)

HSP 1 Score: 187 bits (474), Expect = 1.090e-52
Identity = 112/277 (40.43%), Postives = 158/277 (57.04%), Query Frame = 1
Query:  355 SGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIADDVGES---NPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            +G L   +RP DY +RR DGY EP  L+V+GT+H S+ SA  VRRV+ AV+P++VV+E+CKSRA ++             N + +SG +FA++L RS R+GG +  LLRA L            S +    + A       + RA +  AE   AQIVLGDRP+E+TL+RAW ALS+ +R  L  +L Q   Q                  AA++     +    +DV+  ++   +  FP VV PL++ERD+YLAW+LKRS+AV G R VVGVVG+
Sbjct:    3 TGVLAAVQRPADYVERRDDGYREPELLFVVGTAHFSEQSADDVRRVVEAVQPENVVLEVCKSRAAVIYEPTQSASHGRTPNDMSLSGTNFAAALLRSARLGGNTAMLLRAVL------------SAQADRVSAALGTRSGVEMRAGRAAAERVGAQIVLGDRPIEITLQRAWAALSWRQRFQLLSALWQSRGQ------------------AADVSADAVEAMKDDDVISSVVAEYSAAFPEVVSPLLHERDMYLAWSLKRSKAVNGSRAVVGVVGK 249          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A7R9TFS7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TFS7_9VIRI)

HSP 1 Score: 181 bits (458), Expect = 6.070e-50
Identity = 118/296 (39.86%), Postives = 170/296 (57.43%), Query Frame = 1
Query:  334 ALQDLVESGALQVAKRPVD--------YADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIADDVGESNPLGMSGE-----SFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQ--RAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            +L  LV SGAL   +RP          Y +RR+DGY EP  + VLG+SH+S+ SA H   V+RA+ PQSVVVE+C+SRA L+    DD  ++  L +SG      + A ++ARS+R+GG +  L+R A+A +A       G   G            G+FRAA   AE   A++VLGDRP+E+TL+RA+ ALS  +RL  A  +   A +  RAG               +  +R ++      + VL+  +  L   FP+++ PL++ERD+YLAW+LKRS+AVCG + VVGVVG+
Sbjct:   17 SLAPLVASGALHCVRRPDTVPGAGPDAYVERRTDGYVEPELVVVLGSSHLSERSAEHADAVVRALEPQSVVVEVCRSRAALL----DDESDAGDLSISGRDGAVGTAAMAVARSLRLGGSAAMLMRVAMASSADALAEGAGQRAG------------GEFRAAARAAEAVGAEVVLGDRPLEITLQRAFAALSPLDRLRFAAKMAASAAEARRAG---------------SEAVREAIEAARTEDSVLDAAVAELQSSFPAILRPLVWERDVYLAWSLKRSKAVCGTKAVVGVVGK 281          
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A388KKW6_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KKW6_CHABU)

HSP 1 Score: 182 bits (462), Expect = 6.450e-47
Identity = 113/303 (37.29%), Postives = 168/303 (55.45%), Query Frame = 1
Query:  337 LQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPI-----------------------ADDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
            L DLVE G+L V  RP  Y +RR DGY EP  + ++GT+H+S  SA  V RV+  VRP++VVVELC+SRAG+M                               +SN + +SGESF S++ARS+++GG+S   +R  ++  +    +      G+            +FRAA+  AEE  AQ+VLGDRP+E+TL+RAW A+S+ ER+  A  L+Q                      +  ++  ++     +D L  + + + ++FPS++ PLI ERD+YLAW+LKRS+AV G R VVGV+G+
Sbjct: 1059 LMDLVEEGSLVVVPRPEGYVERRVDGYREPEVVMIMGTAHMSSKSADDVSRVISTVRPENVVVELCRSRAGIMYSSDGRSTPDEREGDGGAAGRAQREGGKTASKSNLMSLSGESFVSAMARSLQLGGRSALAMRLLMSTISERISASTRVSPGE------------EFRAARLAAEEVGAQLVLGDRPIEITLQRAWNAMSWRERVSFAFILLQ---------------GSSGEDASMRVKEDMARMMTSDDALSAVFSEVGKQFPSLIRPLINERDVYLAWSLKRSKAVNGSRLVVGVIGK 1334          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS36_ECTSI6.430e-11863.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0L6_9PHAE9.080e-11476.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A2K1IEV6_PHYPA8.400e-6144.72Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A176VHS1_MARPO4.820e-5944.56Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A7S1X1G4_9CHLO2.620e-5842.46Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A836CI89_9STRA8.240e-5542.44TraB family-domain-containing protein n=1 Tax=Trib... [more]
A0A0D6R8Y6_ARACU4.890e-5338.76Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]
A0A8J9SBL0_9CHLO1.090e-5240.43TraB domain-containing protein n=1 Tax=Coccomyxa s... [more]
A0A7R9TFS7_9VIRI6.070e-5039.86Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A388KKW6_CHABU6.450e-4737.29Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2580053..2583998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.9
Seed ortholog evalue2.3e-98
Seed eggNOG ortholog2880.D7FS36
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TraB family
EggNOG OGsCOG1916@1,KOG2860@2759
Ec32 ortholog descriptionPheromone shutdown, TraB
Ec32 orthologEc-16_004490.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1179
Cds size1176
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927457.0233045-CDS-C-linearis_contig11:2580053..25801511622927457.0233045-CDS-C-linearis_contig11:2580053..2580151Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2580054..2580151 -
1690879710.9966576-CDS-C-linearis_contig11:2580053..25801511690879710.9966576-CDS-C-linearis_contig11:2580053..2580151Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2580054..2580151 -
1622927457.0344207-CDS-C-linearis_contig11:2580502..25805931622927457.0344207-CDS-C-linearis_contig11:2580502..2580593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2580503..2580593 -
1690879711.006355-CDS-C-linearis_contig11:2580502..25805931690879711.006355-CDS-C-linearis_contig11:2580502..2580593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2580503..2580593 -
1622927457.045992-CDS-C-linearis_contig11:2581033..25812191622927457.045992-CDS-C-linearis_contig11:2581033..2581219Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2581034..2581219 -
1690879711.0144594-CDS-C-linearis_contig11:2581033..25812191690879711.0144594-CDS-C-linearis_contig11:2581033..2581219Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2581034..2581219 -
1622927457.057025-CDS-C-linearis_contig11:2581721..25818901622927457.057025-CDS-C-linearis_contig11:2581721..2581890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2581722..2581890 -
1690879711.0261438-CDS-C-linearis_contig11:2581721..25818901690879711.0261438-CDS-C-linearis_contig11:2581721..2581890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2581722..2581890 -
1622927457.0688887-CDS-C-linearis_contig11:2582174..25822781622927457.0688887-CDS-C-linearis_contig11:2582174..2582278Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2582175..2582278 -
1690879711.0342243-CDS-C-linearis_contig11:2582174..25822781690879711.0342243-CDS-C-linearis_contig11:2582174..2582278Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2582175..2582278 -
1622927457.0784526-CDS-C-linearis_contig11:2582618..25827881622927457.0784526-CDS-C-linearis_contig11:2582618..2582788Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2582619..2582788 -
1690879711.0422695-CDS-C-linearis_contig11:2582618..25827881690879711.0422695-CDS-C-linearis_contig11:2582618..2582788Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2582619..2582788 -
1622927457.087418-CDS-C-linearis_contig11:2583640..25839981622927457.087418-CDS-C-linearis_contig11:2583640..2583998Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2583641..2583998 -
1690879711.050308-CDS-C-linearis_contig11:2583640..25839981690879711.050308-CDS-C-linearis_contig11:2583640..2583998Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2583641..2583998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1308.1prot_C-linearis_contig11.1308.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2580054..2583998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1308.1

>prot_C-linearis_contig11.1308.1 ID=prot_C-linearis_contig11.1308.1|Name=mRNA_C-linearis_contig11.1308.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=392bp
RLSLVCSSAAVVMDRLGLTAFCPSPSAPPHPPSSASALSALPFVRPLRAC
LFLGNKPRQHAAGVTAVSRGLRAGKSGGGGDGEQHLKHSEQKAGFKPPLP
LEDDGFKVDMTALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGT
SHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIADDVGESNPLGM
SGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAA
AAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLAR
SLVQLAFQRAGGGGGGAGGDEGGSSEAAELRRSVSDGEVGEDVLEDLITM
LAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR
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mRNA from alignment at C-linearis_contig11:2580053..2583998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1308.1 ID=mRNA_C-linearis_contig11.1308.1|Name=mRNA_C-linearis_contig11.1308.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3946bp|location=Sequence derived from alignment at C-linearis_contig11:2580053..2583998- (Chordaria linearis ClinC8C monoicous)
CGTCTTTCGCTGGTGTGTTCCTCCGCAGCAGTAGTGATGGATCGCCTCGG GCTCACCGCGTTCTGCCCTTCCCCATCAGCGCCCCCACATCCACCGTCAT CAGCGTCAGCGTTATCGGCATTACCGTTTGTCAGGCCGTTGCGAGCCTGT TTGTTTTTGGGAAACAAGCCTCGTCAGCACGCTGCAGGCGTCACCGCCGT GAGCAGAGGGCTGAGGGCTGGCAAATCAGGAGGCGGCGGTGACGGCGAGC AGCATTTAAAGCACTCGGAGCAGAAGGCTGGTTTCAAGCCCCCCTTGCCT CTCGAGGACGACGGATTTAAGGTTGACATGACGGCGCTGCAGGATCTGGT GGAATCTGGTGAGACATCCCACCACAAGGAGGAGAACTAAAGCTACTCTG TTGTGTCTACTATGTCTACAGCAGTTATCAATCCAGTCGGTCTTGCTCTT TGGCCGGGTTGTGGAGCAGCAGCAAGCAGCAAGAGTTGTTGCGTGGTGCC CGTGCAGATAAGGACGCTCCTTTTCCGACGTTTGTTTCACGTCTTACATT CGCCTTCGTGCTAAAATTAATCCTCCCAGCAAAGCTAGTCGTGTGTACAC AGAGGGAAGAGATTGCCGCGCTCTTCTCGCATTGAAAATCAAAGGCGGAG CACCGCAGGAGGGGAGGGTGGGGGGCCTCAGGGAGAAGAACCCTTCTGTG TGACCACGGGCTAGAGCTCCTATCCGGCAGAAATGCTGTGAGCTCTGGTT ATATATAAAATATGTGAAAAAAGAAAAGAAAAAAAGCAACAAACAACACG CACTCGCGAACTCCGGAGCCGTTCGCAAGCCAGCCTCTTGAACGAACCAG CGTGCCGTGCGGCACGTACATGTGTAGGTATGCGTGTGAAAAGTCTATGC CGGCATTGCCCCACGTCTTGGAGCTGCGAATGTCTTTCAACACGAATCCC CCCCCCAACACCAGACGCAAACCCGCTAGCCCTAAATGTAGCTTCTTCTA TTTTGGGGACGAACAGAGCGGCGGTGGACCACGTTTGTTTGGGGCGTTGC GCCGACTTCAAACACGTGTAGGGAGCAGCTCAAGCTGACCCACATCCTTG ACCTGCTGTGCCTGCATCGCGAAAGGAGCTGGCCTGCTTACATGAGTCCC GGCACCCGTATCTTTCTTTCATCTCTGCGCCGCTCGCGTGCGACTTTCTT TGAAATTTAGGAGCCCTGCAGGTGGCCAAGAGACCCGTCGACTATGCCGA CAGGCGCAGCGACGGCTACACCGAGCCCCTGGAGCTTTACGTTCTTGGCA CGAGCCACGTCTCCGACACAAGCGCCGGTCATGTCCGACGAGTTTTGCGG GCAGTCCGCCCTCAGAGTGTGGTGGTCGAGGTGCGTTGCTGTTGCTGCCG CGATGTTAACGCCGCTGAAATGGGCAGCCTGGGACGATCTAGGTAGATGA CGACGGTCGGGCGATTGGTTCAGTCGCACTGATCGGGAAAGCAAGTCCCC GCCTCGCCTGGCAGCACCACAACAGCAGTGCCATTAGTACATAACCCTGT GTGAGAGAGAGACAAAAGCCCATGGCGAATGATGGGTTTGCTAATCACTA CCTTCGAACACATTTGGCCGCGTCATGTCGACGCGGATACATGCTCACCA ACGAAATGTCCTTGCAGAGTGAACGAACGCCCCAAGACCCCCCACCCTAC CGAAACACGGCGTTGCTCAGCTGTGCAAGTCGCGAGCGGGATTGATGATG CCCATCGCGGACGACGTCGGCGAGAGCAACCCCCTGGGGATGTCGGGAGA GAGCTTCGCTTCGTCGTTGGCCAGGTGAAGAAAGCCATGCCCGGAGAATC AATCCCCTCTTTGCCGGCTGAATGAATGAAATGAATTGGTTGAATCCCGT GCCATGCCGCCTCGTCAGCCTAAAAAAAAAAAGCGGCAACGACAGACAGG CGAAACACAAGCTCAGCCTGTACACGTACGTCTTGCTTGCCCGGCCGGTC CAGTGTCCTTAAGACGTTTAGCTTTTAACTTTAGCTTTGTCCTATCCGTC CGGCTCACCCCGCCGCTCGGCCGTTTTTTCATCGCCCCCCCTGCTGATCT GTGCGCAGATCGATTCGCATCGGCGGCCAGTCAACGGCCCTTCTCAGGGC GGCCCTGGCATGGGCCGCTCGTGGGTCGATGAGCGACGGCGGCAGCGGAG AAGGGAAAACGGGCGCGGTTGCCGCCGCAGCGGCCATGTACGGCGACTTT CGGGCGGCGAAGGAGGGCGCAGAAGAGGTACGAACACTACGCACCAAGCG AGCGCTCTGTGCGTCGCAGCGGGGGGGGGCAGGGGGGGGATGCTGGCCTA CTCGCCTTATGATTGTATTTGACGGTTGGTCACGCATCCCTTTGAGATGG AGCAGGGGTGCCCGCGCGTGTGGGGTCGGGGGGGGGGTAATGTGGAGCAA GGTTACAGTAGAAGTTTAGCGAGGTGCAACCGAGTCGGATCGACTGGCCG GAGTGCCGGCTTGGCTCCTCCAAGCTGTAATTAGTGCAGTGTATTACGGG GTGGAATACATGCACGGTCAGGTCAAGCATCGCGCTTGCGCTTTGCCACT GCATCGGCGATGCAGGTATGTACACTTGCACTTCTACGCGGTGGAATGGT CGGTGATGGGGTCCCTTCTCTTCTTGGTTTGTTGGAGCCTTGGCCCTGCC TGTCCTGCCTAGATCCAACCCCCCCACCCTGCACACACACGAAGTACATA TATACACGCTCTTTCGTTGGGCTAATCAGGCGGAAGCACAGATCGTTCTC GGTGACCGGCCCGTAGAGGTAACGCTCAAGAGAGCGTGGGAAGCACTGTC TTTCGGGGAACGGTTGGACCTTGCCCGGAGTTTGGTGCAGCTGGCGTTTC AACGGGCGGGCGGCGGCGGCGGGGGTGCTGGGGGTGACGAGGGTGGTAGT TCGGAGGCTGCAGAGGTGAGGGAAGGAATCGGCCGTGATGGTGTTGCGGG CCTTGACCGCTTGATTCGCCGTGACTGCCTTTTTCGCGCGCGCGGGTGGG CGTCGTCAGCTGCTGCCGCGTTTACGGGAAACGTTTGTGCCTTGTACATA GTTTGTACATCTTCATGTATATTGCGAAATGGTATTGGTTTTGGTGTCGG GGGTGTCGATATCAATGGTGATGTGTCGACGTCGCCTCTTTCCTGTGGGT GACACAAGTGCTGTTGGAAAGTGAATGCGCTTCTGCGAACGCTGCTTCAA TCTGGCTTACCTGTGCAAGCTCACCTGTCCAGCTCATTCGTGCATCGTTT GTTTTTCATGGCGCTGAAATTCTGTTGCTTCCTGGGTTTGTTTGTTTTGC GACGTTGAAAATCTCTTTTTTTTGTTATTGTTTTTTTGTTGTTGTGTCGT GCCAGCTGCGAAGAAGCGTGAGCGACGGGGAGGTGGGAGAAGATGTCCTT GAGGACCTCATCACGATGCTCGCCGAACGATTCCCGTCTGTTGTAGGTGA GGAAAGAGGGAAAATAAAGGAGAGGAGAGCACACGTACAAATACAGCAAA TTAACGTTCAGAACCCGTAGCCAACACGCGGTCAGGTAAGAACGTACAGG TAGGACGGGAGGCGGAATGGAAAGCTCTGCGCTCGATGCGCCACAGCAGC AGTATGTTGACGACGCGGTGTGTCCTACATCACAGATAAAATAGTAGCTT GCTGGCAATTTTCCCTGCCTCATACGAGCCTGAAAATGATTACTGGTCGA TCACCACACAACTATTACGAGAAACAACAGCAGCAGCAGCAGCAGCAGCA ACCAACAACAACAAAGAGTCCCAAACACAATACATCAACGACAACAGGGC CGTTGATATACGAGCGAGATCTGTACCTGGCGTGGACCCTCAAGCGGAGC CGGGCCGTGTGCGGGCAGCGGAGAGTGGTGGGCGTCGTGGGGAGGG
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Coding sequence (CDS) from alignment at C-linearis_contig11:2580053..2583998-

>mRNA_C-linearis_contig11.1308.1 ID=mRNA_C-linearis_contig11.1308.1|Name=mRNA_C-linearis_contig11.1308.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at C-linearis_contig11:2580053..2583998- (Chordaria linearis ClinC8C monoicous)
CGTCTTTCGCTGGTGTGTTCCTCCGCAGCAGTAGTGATGGATCGCCTCGG
GCTCACCGCGTTCTGCCCTTCCCCATCAGCGCCCCCACATCCACCGTCAT
CAGCGTCAGCGTTATCGGCATTACCGTTTGTCAGGCCGTTGCGAGCCTGT
TTGTTTTTGGGAAACAAGCCTCGTCAGCACGCTGCAGGCGTCACCGCCGT
GAGCAGAGGGCTGAGGGCTGGCAAATCAGGAGGCGGCGGTGACGGCGAGC
AGCATTTAAAGCACTCGGAGCAGAAGGCTGGTTTCAAGCCCCCCTTGCCT
CTCGAGGACGACGGATTTAAGGTTGACATGACGGCGCTGCAGGATCTGGT
GGAATCTGCGTCTTTCGCTGGTGTGTTCCTCCGCAGCAGTAGTGATGGAT
CGCCTCGGGCTCACCGCGTTCTGCCCTTCCCCATCAGCGCCCCCACATCC
ACCGTCATCAGCGTCAGCGTTATCGGCATTACCGTTTGTCAGGCCGTTGC
GAGCCTGTTTGTTTTTGGGAAACAAGCCTCGTCAGCACGCTGCAGGCGTC
ACCGCCGTGAGCAGAGGGCTGAGGGCTGGCAAATCAGGAGGCGGCGGTGA
CGGCGAGCAGCATTTAAAGCACTCGGAGCAGAAGGCTGGTTTCAAGCCCC
CCTTGCCTCTCGAGGACGACGGATTTAAGGTTGACATGACGGCGCTGCAG
GATCTGGTGGAATCTGGAGCCCTGCAGGTGGCCAAGAGACCCGTCGACTA
TGCCGACAGGCGCAGCGACGGCTACACCGAGCCCCTGGAGCTTTACGTTC
TTGGCACGAGCCACGTCTCCGACACAAGCGCCGGTCATGTCCGACGAGTT
TTGCGGGCAGTCCGCCCTCAGAGTGTGGTGGTCGAGGAGCCCTGCAGGTG
GCCAAGAGACCCGTCGACTATGCCGACAGGCGCAGCGACGGCTACACCGA
GCCCCTGGAGCTTTACGTTCTTGGCACGAGCCACGTCTCCGACACAAGCG
CCGGTCATGTCCGACGAGTTTTGCGGGCAGTCCGCCCTCAGAGTGTGGTG
GTCGAGCTGTGCAAGTCGCGAGCGGGATTGATGATGCCCATCGCGGACGA
CGTCGGCGAGAGCAACCCCCTGGGGATGTCGGGAGAGAGCTTCGCTTCGT
CGTTGGCCAGCTGTGCAAGTCGCGAGCGGGATTGATGATGCCCATCGCGG
ACGACGTCGGCGAGAGCAACCCCCTGGGGATGTCGGGAGAGAGCTTCGCT
TCGTCGTTGGCCAGATCGATTCGCATCGGCGGCCAGTCAACGGCCCTTCT
CAGGGCGGCCCTGGCATGGGCCGCTCGTGGGTCGATGAGCGACGGCGGCA
GCGGAGAAGGGAAAACGGGCGCGGTTGCCGCCGCAGCGGCCATGTACGGC
GACTTTCGGGCGGCGAAGGAGGGCGCAGAAGAGATCGATTCGCATCGGCG
GCCAGTCAACGGCCCTTCTCAGGGCGGCCCTGGCATGGGCCGCTCGTGGG
TCGATGAGCGACGGCGGCAGCGGAGAAGGGAAAACGGGCGCGGTTGCCGC
CGCAGCGGCCATGTACGGCGACTTTCGGGCGGCGAAGGAGGGCGCAGAAG
AGGCGGAAGCACAGATCGTTCTCGGTGACCGGCCCGTAGAGGTAACGCTC
AAGAGAGCGTGGGAAGCACTGTCTTTCGGGGAACGGTTGGACCTTGCCCG
GAGTTTGGTGCAGCTGGCGTTTCAACGGGCGGGCGGCGGCGGCGGGGGTG
CTGGGGGTGACGAGGGTGGTAGTTCGGAGGCTGCAGAGGCGGAAGCACAG
ATCGTTCTCGGTGACCGGCCCGTAGAGGTAACGCTCAAGAGAGCGTGGGA
AGCACTGTCTTTCGGGGAACGGTTGGACCTTGCCCGGAGTTTGGTGCAGC
TGGCGTTTCAACGGGCGGGCGGCGGCGGCGGGGGTGCTGGGGGTGACGAG
GGTGGTAGTTCGGAGGCTGCAGAGCTGCGAAGAAGCGTGAGCGACGGGGA
GGTGGGAGAAGATGTCCTTGAGGACCTCATCACGATGCTCGCCGAACGAT
TCCCGTCTGTTGTAGCTGCGAAGAAGCGTGAGCGACGGGGAGGTGGGAGA
AGATGTCCTTGAGGACCTCATCACGATGCTCGCCGAACGATTCCCGTCTG
TTGTAGGGCCGTTGATATACGAGCGAGATCTGTACCTGGCGTGGACCCTC
AAGCGGAGCCGGGCCGTGTGCGGGCAGCGGAGAGTGGTGGGCGTCGTGGG
GAGGGGCCGTTGATATACGAGCGAGATCTGTACCTGGCGTGGACCCTCAA
GCGGAGCCGGGCCGTGTGCGGGCAGCGGAGAGTGGTGGGCGTCGTGGGGA
GG
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