mRNA_C-linearis_contig11.1308.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: D7FS36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS36_ECTSI) HSP 1 Score: 361 bits (926), Expect = 6.430e-118 Identity = 223/350 (63.71%), Postives = 248/350 (70.86%), Query Frame = 1
Query: 262 HSEQKAGFKPPLPLEDDGFKVDMTALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIA--DDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDG-----GSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEA--------QIVLGDRPVEVTLKRAW------------------EALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXE------------AAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
HSEQK G++PP PLEDDG VD++ LQDL+ESG LQVA+RP DY+DRRSDGYTEPLE+YVLGTSH S+TSAGHVRRV+ AVRPQSVVVELCKSRAGLMMP+A ++ G +NPL MSGE+FASSLARSIRIGGQSTALLRAALAWAARGSM+DG GEG T +A MYGDFRAAKEGAEEA Q+ +G V AW +F R RS + +G XXXXXXXXX A +LR+SVSDGEVGED LEDLI+MLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR
Sbjct: 74 HSEQKTGYQPPSPLEDDGHVVDLSLLQDLLESGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASETSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGSNNPLAMSGENFASSLARSIRIGGQSTALLRAALAWAARGSMADGQETMRSGGEGTT--TPTSAVMYGDFRAAKEGAEEARIACSGFGLLQVQVGSWTVVWIYGMAWYEDHRGGLTSDSAASTWYSPSTFSRRERTFRSRGSACQECSGSSDTQXXXXXXXXXXXXXXXXXXNSGAAEKLRKSVSDGEVGEDALEDLISMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 421
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A6H5L0L6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L6_9PHAE) HSP 1 Score: 343 bits (880), Expect = 9.080e-114 Identity = 187/243 (76.95%), Postives = 208/243 (85.60%), Query Frame = 1
Query: 226 SGGGGDGEQHLKHSEQKAGFKPPLPLEDDGFKVDMTALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIA--DDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDG-----GSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAG 933
+GGGG G + + HSEQK G++PP PLEDDG VD++ LQDL++SG LQVA+RP DY+DRRSDGYTEPLE+YVLGTSH S+TSAGHVRRV+ AVRPQSVVVELCKSRAGLMMP+A + G +NPL MSGE+FASSLARSIRIGGQSTALLRAALAWAARGSM+DG GEG T +A MYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALS GERLDLA SLVQLAFQR+G
Sbjct: 62 AGGGGGGVEGV-HSEQKTGYQPPSPLEDDGHVVDLSLLQDLLDSGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASETSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPESEAGANNPLAMSGENFASSLARSIRIGGQSTALLRAALAWAARGSMADGQETIRSGGEGTT--TPTSAVMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSVGERLDLALSLVQLAFQRSG 301
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A2K1IEV6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IEV6_PHYPA) HSP 1 Score: 211 bits (536), Expect = 8.400e-61 Identity = 127/284 (44.72%), Postives = 177/284 (62.32%), Query Frame = 1
Query: 337 LQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIAD--DV--GESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
L DLVE G L + KRP DY +RRSDGY EP +Y++GT+H+S SA V RV+ AV+P++VV+ELC+SRAG+M A DV G N + MSG++F S++ RS+++GG+S LR LA G K + +A A +FRAA++ AE AQIVLGDRP+E+TL+RAW +L + ERL +LVQ + E+ ++ +S +D L + L+ RFPS++ PLI+ERD+YLAW+LKRS+AV G +RVVGVVG+
Sbjct: 87 LMDLVEDGTLVIVKRPPDYVERRSDGYVEPEVVYIVGTAHMSKLSANQVTRVINAVQPENVVIELCRSRAGIMYDEAQTSDVKQGSKNLMSMSGDNFGSAVGRSLKLGGRSALALRLLLA------------GVSKRLSASAGVATGEEFRAARKAAEALGAQIVLGDRPIEITLQRAWRSLKWDERLRFGATLVQGMSDK----------NLNVSEESLQMLKS-------DDALSAMFGELSSRFPSLMQPLIHERDMYLAWSLKRSKAVNGCKRVVGVVGK 341
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A176VHS1_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VHS1_MARPO) HSP 1 Score: 206 bits (525), Expect = 4.820e-59 Identity = 131/294 (44.56%), Postives = 174/294 (59.18%), Query Frame = 1
Query: 337 LQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLM-----MPIADDVG---------ESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
L DLVE+G L V KRP DY +RRSDGY EP ++V+GT+H+S SA V RV++AVRP++VVVELC+SRAG+M + +D V E N + MSGE+F ++++RS+R+GG+S LR L + G G+ +FRAA+ AEE AQ+VLGDRP+EVTLKRAWEAL + ER LA VQ +A+E V +D L + + + R PS++ PLIYERD+YLAW+LKRS+AV G RVVGVVG+
Sbjct: 112 LMDLVENGTLVVVKRPKDYVERRSDGYREPEMVFVVGTAHMSVVSATEVERVVKAVRPENVVVELCRSRAGIMYDEPTIKGSDSVDGEEIRGTQKEKNLMSMSGENFGAAMSRSLRLGGRSALALRLLLGGLSEKLSKSAGVSTGE------------EFRAARRAAEEIGAQLVLGDRPIEVTLKRAWEALQWDERFRLAGIFVQAM--------------NSSKLDASE---EVLAALKSDDALSQMFSEMGTRLPSLLQPLIYERDMYLAWSLKRSKAVNGCSRVVGVVGK 376
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A7S1X1G4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X1G4_9CHLO) HSP 1 Score: 202 bits (514), Expect = 2.620e-58 Identity = 121/285 (42.46%), Postives = 174/285 (61.05%), Query Frame = 1
Query: 337 LQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLM-----MPIADDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
L DLVE+G L V RP DY +RR DGY EP E++++GT+H+S S V RV+ AV+PQ+VVVELCKSRAG+M +D V +N +G+SG SF +++ RS R+GGQS +LR LA + + E ++GA + +AAK A +AQ+VLGDRP+E+TL+RAW +L+F E+L L L++ FQ L ++ + +D + ++ A+ +P+++ PLI+ERDLYLAW+LKRS+AV G RVVGVVG+
Sbjct: 13 LADLVEAGVLHVVLRPADYKERRVDGYQEPKEIFLVGTAHMSKRSCDDVARVIAAVKPQNVVVELCKSRAGVMYEDEAQSESDRVKATNQMGLSGSSFLAAVGRSARLGGQSAFILRVLLAQVSNRFSAQV---EVQSGA---------EMKAAKIAASHVQAQVVLGDRPIEITLQRAWASLTFREKLQLTSYLIRALFQPMNQ---------------VSLDDALIEELKQDDAVSAMLKQFADAYPNLLKPLIFERDLYLAWSLKRSKAVNGTERVVGVVGK 270
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A836CI89_9STRA (TraB family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI89_9STRA) HSP 1 Score: 192 bits (487), Expect = 8.240e-55 Identity = 132/311 (42.44%), Postives = 168/311 (54.02%), Query Frame = 1
Query: 259 KHSEQKAGFKPPLPLEDDGFKVDMTALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIADDVGESN----PLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYG-DFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
+HSEQ+ G+ PP P+ DDG VD AL DL SA V RV+R V+PQSVVVELC+SR GLMM ++ G +N PLG+SG + +L RS+++GGQ LLRAALA A A A G DFRAA A +A+IVLGDRP+E+TLKRAW ALS E++ LA L AF G E +EL + G V +DV++ L+ L+ +FP++V PL++ERD YLAW+LKRSRAVCG+ RVVGVVGR
Sbjct: 26 QHSEQRQGYLPPKPVLDDGHVVDTAALDDL---------------------------------------QSASDVARVIREVQPQSVVVELCRSRVGLMME--EEPGAANAPASPLGLSGGNLQEALQRSVQVGGQGMVLLRAALAHAT---------------ASATETVRPGLDFRAANACATALDAEIVLGDRPIEITLKRAWAALSTAEKVRLAAGL---AFAAVGGGKAVSG-------EGSELLAAARGGRVDDDVVDALMAKLSRQFPALVAPLVHERDAYLAWSLKRSRAVCGKSRVVGVVGR 270
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A0D6R8Y6_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R8Y6_ARACU) HSP 1 Score: 191 bits (484), Expect = 4.890e-53 Identity = 131/338 (38.76%), Postives = 186/338 (55.03%), Query Frame = 1
Query: 214 RAGKSGGGGD----GEQHLKHSEQKAGFKPPLPLEDDGFKVDM-TALQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIA---------DDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVG---EDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
RAG +GGGG + +K F+ E G +M L DL E G + V K+ DY +RR+DGY EP + VLGTSHVS SA +V RVLRAVRPQ+VVVELC+SR G+M + ++N M GESF ++ RS+ +GGQS LR LA ++ S G+ G +F AA++ +EE AQIVLGDRP+E+TL+RAW++L + E++ L +L+Q + + +S+G +D L + L+ +PS++ PLI+ERD+YLAW+LKRS+AV G + VVG++GR
Sbjct: 46 RAGNNGGGGGRVGVAKVAVKAPPSDFDFRRETRQETAGIIEEMYPELSDLAEEGEIVVVKKRADYVERRTDGYVEPDLIIVLGTSHVSRDSAANVERVLRAVRPQNVVVELCRSRVGIMYSSKSTHSIKLQPEKKQKTNLFSMGGESFLGAMGRSLTLGGQSGLALRLLLAGFSQKMSSQVGTSIGA------------EFCAARKISEEIGAQIVLGDRPIEITLERAWKSLKWTEQVKLVSTLLQGIYSTS---------------------LCISEGNFKMKTDDALSTMFRELSMFYPSLLQPLIHERDVYLAWSLKRSKAVNGSKIVVGIIGR 350
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A8J9SBL0_9CHLO (TraB domain-containing protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SBL0_9CHLO) HSP 1 Score: 187 bits (474), Expect = 1.090e-52 Identity = 112/277 (40.43%), Postives = 158/277 (57.04%), Query Frame = 1
Query: 355 SGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIADDVGES---NPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
+G L +RP DY +RR DGY EP L+V+GT+H S+ SA VRRV+ AV+P++VV+E+CKSRA ++ N + +SG +FA++L RS R+GG + LLRA L S + + A + RA + AE AQIVLGDRP+E+TL+RAW ALS+ +R L +L Q Q AA++ + +DV+ ++ + FP VV PL++ERD+YLAW+LKRS+AV G R VVGVVG+
Sbjct: 3 TGVLAAVQRPADYVERRDDGYREPELLFVVGTAHFSEQSADDVRRVVEAVQPENVVLEVCKSRAAVIYEPTQSASHGRTPNDMSLSGTNFAAALLRSARLGGNTAMLLRAVL------------SAQADRVSAALGTRSGVEMRAGRAAAERVGAQIVLGDRPIEITLQRAWAALSWRQRFQLLSALWQSRGQ------------------AADVSADAVEAMKDDDVISSVVAEYSAAFPEVVSPLLHERDMYLAWSLKRSKAVNGSRAVVGVVGK 249
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A7R9TFS7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TFS7_9VIRI) HSP 1 Score: 181 bits (458), Expect = 6.070e-50 Identity = 118/296 (39.86%), Postives = 170/296 (57.43%), Query Frame = 1
Query: 334 ALQDLVESGALQVAKRPVD--------YADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPIADDVGESNPLGMSGE-----SFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQ--RAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
+L LV SGAL +RP Y +RR+DGY EP + VLG+SH+S+ SA H V+RA+ PQSVVVE+C+SRA L+ DD ++ L +SG + A ++ARS+R+GG + L+R A+A +A G G G+FRAA AE A++VLGDRP+E+TL+RA+ ALS +RL A + A + RAG + +R ++ + VL+ + L FP+++ PL++ERD+YLAW+LKRS+AVCG + VVGVVG+
Sbjct: 17 SLAPLVASGALHCVRRPDTVPGAGPDAYVERRTDGYVEPELVVVLGSSHLSERSAEHADAVVRALEPQSVVVEVCRSRAALL----DDESDAGDLSISGRDGAVGTAAMAVARSLRLGGSAAMLMRVAMASSADALAEGAGQRAG------------GEFRAAARAAEAVGAEVVLGDRPLEITLQRAFAALSPLDRLRFAAKMAASAAEARRAG---------------SEAVREAIEAARTEDSVLDAAVAELQSSFPAILRPLVWERDVYLAWSLKRSKAVCGTKAVVGVVGK 281
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Match: A0A388KKW6_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KKW6_CHABU) HSP 1 Score: 182 bits (462), Expect = 6.450e-47 Identity = 113/303 (37.29%), Postives = 168/303 (55.45%), Query Frame = 1
Query: 337 LQDLVESGALQVAKRPVDYADRRSDGYTEPLELYVLGTSHVSDTSAGHVRRVLRAVRPQSVVVELCKSRAGLMMPI-----------------------ADDVGESNPLGMSGESFASSLARSIRIGGQSTALLRAALAWAARGSMSDGGSGEGKTGAVAAAAAMYGDFRAAKEGAEEAEAQIVLGDRPVEVTLKRAWEALSFGERLDLARSLVQLAFQRAGXXXXXXXXXXXXXXEAAELRRSVSDGEVGEDVLEDLITMLAERFPSVVGPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGR 1176
L DLVE G+L V RP Y +RR DGY EP + ++GT+H+S SA V RV+ VRP++VVVELC+SRAG+M +SN + +SGESF S++ARS+++GG+S +R ++ + + G+ +FRAA+ AEE AQ+VLGDRP+E+TL+RAW A+S+ ER+ A L+Q + ++ ++ +D L + + + ++FPS++ PLI ERD+YLAW+LKRS+AV G R VVGV+G+
Sbjct: 1059 LMDLVEEGSLVVVPRPEGYVERRVDGYREPEVVMIMGTAHMSSKSADDVSRVISTVRPENVVVELCRSRAGIMYSSDGRSTPDEREGDGGAAGRAQREGGKTASKSNLMSLSGESFVSAMARSLQLGGRSALAMRLLMSTISERISASTRVSPGE------------EFRAARLAAEEVGAQLVLGDRPIEITLQRAWNAMSWRERVSFAFILLQ---------------GSSGEDASMRVKEDMARMMTSDDALSAVFSEVGKQFPSLIRPLINERDVYLAWSLKRSKAVNGSRLVVGVIGK 1334 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1308.1 >prot_C-linearis_contig11.1308.1 ID=prot_C-linearis_contig11.1308.1|Name=mRNA_C-linearis_contig11.1308.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=392bp RLSLVCSSAAVVMDRLGLTAFCPSPSAPPHPPSSASALSALPFVRPLRACback to top mRNA from alignment at C-linearis_contig11:2580053..2583998- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1308.1 ID=mRNA_C-linearis_contig11.1308.1|Name=mRNA_C-linearis_contig11.1308.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3946bp|location=Sequence derived from alignment at C-linearis_contig11:2580053..2583998- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:2580053..2583998- >mRNA_C-linearis_contig11.1308.1 ID=mRNA_C-linearis_contig11.1308.1|Name=mRNA_C-linearis_contig11.1308.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at C-linearis_contig11:2580053..2583998- (Chordaria linearis ClinC8C monoicous)back to top |