mRNA_C-linearis_contig11.1301.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1301.1
Unique NamemRNA_C-linearis_contig11.1301.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: D7G512_ECTSI (Cathepsin-like proteinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G512_ECTSI)

HSP 1 Score: 654 bits (1686), Expect = 7.520e-223
Identity = 341/471 (72.40%), Postives = 378/471 (80.25%), Query Frame = 3 
Query:  147 MTYQSMENANDGMPLLREK-SMVQVVEEGSIDELNGTSM-SRRSRRGAALGLIVLALGXXXXXXXXXXXXXXXXXXXXXXXXXLAVTGSAGKT--------------------AAAARAAPKMSRLTAEEMEALFEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNANSQGPKYDVTMWADLTREEYKSYQNYGKISDEAKEVGRASAKSLNKLAEENTSCQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGDPVCSDVVHEGNYAATLEIEVAVAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSGIDMGEYCDPLEIDHAVLIVGYGEEDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDVTTILVEDATVK 1493
            MTYQ+MENANDGMPLLREK S V VVEEG IDE++GTS  SRR    AALGLI     XXXXXXXX                  A TG+A  T                    AA  R++P++S L+ +E+E+LF++F +KFEKSY++DDEKAMRFE+FK NLKRIDERN+ S G KYDVTMW DLT EE+K YQNYGKISDEAKEV R+ A S    ++   SCQSCTRFPELEQYI GDLPT FDWRDYGAVT VKNQAYCGSCW+FSTTGCLEGAWY+ GHPL+SLSEQQLVACDT +NQGCNGGWPS+SMDYIS NGGIVPE+IYPYRKVFMNG LGDPVCSDVV EGNYAATL IEVA+AE SM+E+AMARWLILNGPLSVALDA+GMDYYS GIDMGEYC+PLEIDHAVLIVGYGEEDGVK+W IKNSWKYLWGE GYYRLVR VNACGIADDVTTI+V DATV+
Sbjct:    1 MTYQTMENANDGMPLLREKGSAVDVVEEGGIDEIDGTSTTSRRXXXXAALGLIXXXXXXXXXXXXXGGKPSSQSA---------AATGAAAATKLSAAAPGGSDHGEFRLSPKAAEVRSSPRLSELSDQELESLFQEFGIKFEKSYENDDEKAMRFEVFKRNLKRIDERNSKSLGVKYDVTMWTDLTHEEFKGYQNYGKISDEAKEVARSKAMSTKDASDMYESCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKVFMNGHLGDPVCSDVVKEGNYAATLAIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIVADATVE 462
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: A0A6H5JC15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC15_9PHAE)

HSP 1 Score: 563 bits (1452), Expect = 4.370e-187
Identity = 289/470 (61.49%), Postives = 322/470 (68.51%), Query Frame = 3 
Query:  420 AAAARAAPKMSRLTAEEMEALFEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNANSQGPKYDVTMWADLTREEYKSYQNYGKISDEAKEVGRASAKSLNKLAEENTSCQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGDPVCSDVVHEGNYAATLEIEVAVAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSGIDMGEY----------------------------------------------------------------------------------------------------------------CDPLEIDHAVLIVGYGEEDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDVTTILVEDATVK 1493
            AA  R++P++S L+ +E+EALF +F +KFEKSY++DDEKAMRFE+FK NLKRIDERN+ S G KYDVTMW DLT EE+K YQNYGK+SDEAKEV R+ AKS   +++   SCQSCTRFPELEQYI GDLPT FDWRDYGAVT VKNQAYCGSCW+FSTTGCLEGAWY+ GHPL+SLSEQQLVACDT +NQGCNGGWPS+SMDYIS NGGIVPE+IYPYRKVFMNG LGDPVCSDVV EGNYAATL IEVA+AE SM+E+AMARWLILNGPLSVALDA+GMDYYS GIDMGEY                                                                                                                C+PLEIDHAVLIVGYGEEDGVK+W IKNSWKYLWGE GYYRLVR VNACGIADDVTTI+V DATV+
Sbjct:   38 AAEVRSSPRLSELSDQELEALFHEFGIKFEKSYENDDEKAMRFEVFKRNLKRIDERNSKSLGVKYDVTMWTDLTHEEFKGYQNYGKVSDEAKEVARSKAKSKADMSDIYESCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISENGGIVPESIYPYRKVFMNGHLGDPVCSDVVKEGNYAATLSIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGEQGYYRLVRGVNACGIADDVTTIIVADATVE 507
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: F0Y246_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y246_AURAN)

HSP 1 Score: 266 bits (681), Expect = 4.890e-77
Identity = 152/339 (44.84%), Postives = 198/339 (58.41%), Query Frame = 3 
Query:  480 LFEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNANSQGPKYDVTMWADLTREEYKSYQNYGKISDEAKEVGRASAKSLNKLAEENTSCQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGD-------PVCSDVVHEGNYAA----TLEIEVAVAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSGIDMGEYCDPLEIDHAVLIVGYGEED-GVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDV 1460
            L+E+F  +  + + DD E A RF IF+ NL  ID  NA +    + +T + D T EE +S             V   SA          + C +C RFP    Y  G+LP  FDWR  GAVTAVKNQ YCGSCWSFS+ G +EG  ++ G  L SLS QQLV+C+T +N GC+GGWP  +M+Y+S+ GG+VP   YPY+ + M+ M G        P C   +  G+ AA     +E    VA  +  ED M   L+ NGPLS+A +A GM++Y+ G+D    CDP  +DHAVL+VGYG E   V +W IKNSW   WGE GYYRLVR VNACG+A+ V
Sbjct:    9 LYEQFKRRERRDF-DDAEDARRFAIFRRNLATIDTLNAANPAAVFGITSFCDRTDEERQS-------------VAWVSA----------SDCAACDRFPHFGDYDMGNLPDDFDWRALGAVTAVKNQKYCGSCWSFSSAGDIEGTMFLAGDDLISLSTQQLVSCNT-YNYGCDGGWPFAAMEYVSHFGGLVPMDDYPYKGICMDNMCGGTEIFTGTPTCDKELLNGHLAAGDVAAIEGYQFVAMGAEYEDLMHVALVKNGPLSLAFNANGMEFYAGGVDHHFPCDPTALDHAVLLVGYGTETFDVPYWLIKNSWDTEWGEGGYYRLVRGVNACGVANMV 322
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: F0Y300_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y300_AURAN)

HSP 1 Score: 244 bits (622), Expect = 9.310e-68
Identity = 148/353 (41.93%), Postives = 196/353 (55.52%), Query Frame = 3 
Query:  456 LTAEEMEALFEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNANSQGPKYDVTMWADLTREEYKSYQNYGKISDEAKEVGRASAKSLNKLAEENTSCQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKV-FMNGMLGDPVCSDVVHEGNYAATLEIEVAVAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSGIDM-GEY--CDPLEIDHAVLIVGYGEE--DG---VKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDVTTILVEDAT 1487
            L   + ++LF++F  ++ KSY    E   RF IF  NL  ID  N  +    + + ++AD T EE    +           VG AS           + C +C  +P   +Y  G+LP  FDWR+ GAVT VKNQAYCGSCWSFST   LEG  Y+    L+S + QQLV C+T  N GC+GG+P  +M Y+S+ GG+V     PY+K+  +N  L D    DV H   +         VA  +  E  M   L+ NGPLS+A +A GMDYY  G+D  G+   CDP  +DHAVL+VGYG +  DG   V +W IKNSW  +WGE GYYRLVR  NACG+A+ V   +V+  T
Sbjct:   80 LDTRDQKSLFDQFIDEYSKSYDTTHEYNDRFTIFSKNLNYIDALNTQNPHALFGLNVFADQTEEERSKRRMTDPSITNYTRVGWASG----------SDCAACNLYPAFGEYDMGNLPDDFDWRELGAVTRVKNQAYCGSCWSFSTAADLEGTHYLATGDLESYAPQQLVECNTM-NLGCDGGYPFAAMQYLSHFGGMVTWETMPYKKIELLNEKLED---GDVAHISGWQM-------VAMGADYESLMRVTLVKNGPLSIAFNANGMDYYVHGVDGDGDMFTCDPTSLDHAVLVVGYGVQHTDGNGKVPYWVIKNSWDDVWGEDGYYRLVRGSNACGVANMVVHSIVKSTT 411
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: A0A836CK28_9STRA (Pept_C1 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK28_9STRA)

HSP 1 Score: 230 bits (587), Expect = 4.260e-64
Identity = 130/345 (37.68%), Postives = 184/345 (53.33%), Query Frame = 3 
Query:  483 FEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNANSQGPKYDVTMWADLTREEYKSYQNYGKISDEAKEVGRASAKSLNKLAEENTSCQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWN--QGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGD-----PVCSDVVHEGNYAATLEIEVA----VAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSG-IDMGEYCDPLEIDHAVLIVGYGEEDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDVTTILVED 1481
            F+ +  +  ++Y  D E   RF  FK NL  ID    N   P       +   +    S   +G I++E                     C +C  +PEL  Y   ++PT FDWR     T V +Q YCGSCWSFST G +EG W++    +  LS+QQLVACD K N  +GCNGG P  +M Y++  GG+V E  YPY+ V   G  G      P C      G+   +    +     VA  +  ED +A  ++ NGP+S+ L+A+GM+YY +G ID    C+P  +DHAVL+VG+GE+DGV++W +KNSW   WGE GYYR+V+  N CG+A+   T +++D
Sbjct:    4 FDSYRTQHARAYASDGEAERRFAAFKLNLALIDA--LNDANPLALFEGISSKVKGPNISKSQFGWITEE--------------------DCAACGMYPELGNYTLANMPTEFDWRAK-YETPVSSQGYCGSCWSFSTAGDIEGKWFLATGQVVELSKQQLVACDQKRNAAEGCNGGLPYAAMQYVASTGGLVYEEDYPYKNVCAWGTCGSAPKGTPTCDTDQVRGSLKDSAVAHIGGWQMVALGAQYEDLLATAMVKNGPISIVLNAVGMEYYKAGAIDTTLPCEPTTLDHAVLVVGFGEQDGVEYWVVKNSWGSWWGEGGYYRVVKGQNHCGLANFAVTSVIKD 325
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: A0A7S2BSW9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BSW9_9STRA)

HSP 1 Score: 228 bits (582), Expect = 8.790e-64
Identity = 116/265 (43.77%), Postives = 153/265 (57.74%), Query Frame = 3 
Query:  753 CQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGDPVC------SDVVHEGNYAATLEIEVAVAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSGI-------------------------DMGEYCDPLEIDHAVLIVGYGEEDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIAD 1454
            C +C R+P  ++Y   + P +FDWRD GAVT VKNQ YCGSCW+FST   +EG  ++    L S SEQQ VACDT +N GC+GGW   +M Y++  G +V E  YPY  V M   L  P C      S +  +G+  A +E    VA  +  ED MA +++ NGPLS+A++A GMDYY  GI                          M   C+P ++DH VL+V YGE+DGV +W IKNSW   WGE GYYR+ R VN CG+++
Sbjct:   25 CAACERYPGFKKYTSENRPDNFDWRDLGAVTEVKNQKYCGSCWTFSTAQDIEGTHFLATGNLTSFSEQQFVACDT-YNYGCDGGWMFAAMQYVADFGILVSEEAYPYMGVMMTYNLPTPTCDTDLLNSKLEGDGDDIAHIEGYQMVAMGAEYEDLMATYMLKNGPLSIAINANGMDYYVHGIVGCETIAGSEYCEAGAIDAPSDGDSTMEHTCNPTDLDHGVLLVAYGEQDGVDYWVIKNSWAETWGEDGYYRIERGVNKCGVSN 288
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: A0A7S2BCN1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BCN1_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.340e-62
Identity = 152/399 (38.10%), Postives = 208/399 (52.13%), Query Frame = 3 
Query:  480 LFEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNANSQGPKY---DVTMWAD------------------------LTREEYKSYQNYGKISDEAKEVGRA----SAKSLNKLAEENTS-----------CQSCTRFPELEQYIDGDLPTSFDWRDYG-AVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGD-----PVC-SDVVH----EGNYAATLEIEVAVAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSG-------------IDMGEYCDPLEIDHAVLIVGYGEEDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDVTTILVE 1478
            L+++F +++ K Y+   E+  RF+IFK NL+ ID  N  +    +   D T W D                        + +E++ S  +  K S +  E+G A    S++  +K      S           C +C  +P    Y  G+LP SFDWR  G  VT VKNQ YCGSCWSFST   +EG  Y        LSEQQLVACDTK + GC+GG+P  +M YIS  GG++ E  YPY+ +   G  G+     P C SD ++     GN +A    ++ VA     ED M   L+ NGP+S++L+A GMDYY  G             ID+   C+P  +DHAVL+VGYG ED + +W IKNSW  LWGE GYYRLVR  N CG+A+   T +++
Sbjct:   88 LWKEFTLRYSKKYRSKKEEQDRFQIFKKNLQFIDNLNFANPNAVFTITDRTDWTDSEMARMRGLRSGYLAADSNKTSLEIMKEDFASISDSHKNSVQLAEMGLAEVLKSSEEKDKFDGSKFSSDEVGWVSVQDCAACALYPHFSNYTMGNLPDSFDWRAIGDVVTDVKNQKYCGSCWSFSTAQDIEGKHYFATGERVRLSEQQLVACDTK-DWGCDGGYPYRAMQYISQVGGMLHEASYPYKGICAWGACGNEEAGTPTCDSDTLNTNIKSGNVSAIGGWQM-VAMGEDYEDLMRVALVKNGPISISLNANGMDYYVHGVVGCSNDDCNAGAIDVHTPCEPTALDHAVLLVGYGTEDDIPYWLIKNSWGDLWGEDGYYRLVRGSNHCGVANFAITSVIK 484
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: A0A7S2G239_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G239_9STRA)

HSP 1 Score: 233 bits (594), Expect = 5.120e-62
Identity = 144/384 (37.50%), Postives = 198/384 (51.56%), Query Frame = 3 
Query:  456 LTAEEMEALFEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNANSQGPKYDVTMWADLTREEYKSYQNYGKISD-------------EAKEVGRASA-------------KSLNKLAEENTSCQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGDPVCSD------VVHEGNYAATLEIEVAVAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSGI-----------------DMGEYCDPLEIDHAVLIVGYGEEDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDV 1460
            LT++E+  LF KF  +F++SY D+ E+ +RF+IFK NLK ID  N  +    + +T  +D T  E    +   + SD             EA   G +               + +   A E+  C +C  FP L QY    LP  FDWR  GAV++VKNQ YCGSCWSF+    +EG  ++    L + SEQQL+ACD + N GC+GGW   +M YI+  GGIVP+  YPY+ ++MN     P C        +   G     +     VA     E  M   L+ NGPLS+A++A GM+YY  GI                 D    CDP  +DH VL +G+GE++  ++WTIKNSW   WGE G+YRL R  N CG+A+ V
Sbjct:  207 LTSDEIRGLFTKFQEEFDRSY-DEKEEVLRFDIFKNNLKFIDALNRQNPLAVFGITECSDHTEAERSKRKMSQRWSDYDAMKASLPTEVVEAAAAGPSHVVGKTFDVSPHLWERGMVSWASED-DCAACEMFPGLGQYNTSFLPEQFDWRKLGAVSSVKNQKYCGSCWSFAAVQDIEGVHFLATGNLTTFSEQQLIACDER-NYGCDGGWMYAAMQYIADFGGIVPDYDYPYKGIYMNYEEPTPTCDQDLLNRKLEENGRDLGHISGFQMVAMGGEYERLMETVLLKNGPLSLAVNANGMEYYVRGIIGCETIAGKDYCNSATIDNHTPCDPTALDHGVLAIGFGEQENTEYWTIKNSWGEQWGEDGFYRLERGNNKCGVANMV 587
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: A0A7S2W4U9_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4U9_9STRA)

HSP 1 Score: 229 bits (585), Expect = 9.790e-62
Identity = 148/399 (37.09%), Postives = 209/399 (52.38%), Query Frame = 3 
Query:  426 AARAAPKMSRLTAEEMEALFEKFAVKFEKSYKDDD-EKAMRFEIFKTNLKRIDERNANSQGPKYDVTMWADLTREEYKSYQNYGKISDEAKEVGRASAKSL---------------------NKLAEENTS-----------CQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGDPVC------SDVVH---EGNYAATLEIEVAVAESSMSEDAMARWLILNGPLSVALDAIGMDYYSSG--------------IDMGEYCDPLEIDHAVLIVGYGEEDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIAD 1454
            A+R+ P    +T  ++E ++E F     + Y DD  EKA RF++FK NL  ID+ NA      + +T   D++  E +  +  G + D +K  G+   ++L                     + L+ +N S           C +C RF     Y   +LP +FDWR+ GAVT VKNQ YCGSCW+FST   LEG  ++    L+SLSEQQLVAC+T  + GC+GG+P  +M YI   GG+V +  Y Y+ +   G  G PV       +++++   E    A++     V+  +  E  +   L+ NGP+S+A +A GMDYY  G              ID    CDP  +DHAVLIVGYG E GV +W IKNSW   WGE GYYR+VR  N CG+A+
Sbjct:   96 ASRSTPVYGDMTNAQLEEIWEDFLQDNNRGYADDSGEKAQRFQMFKQNLFFIDKLNAAYPDATFGITDRTDMSDAEKRRTRGLGPVED-SKLGGKTRYQALKDMYTDQDAIVLGEKGLDAVFDALSSKNMSFGMVPWVSASDCAACKRFEHFSLYTWDNLPENFDWRELGAVTDVKNQKYCGSCWTFSTAADLEGTHFLATGELESLSEQQLVACNTA-DWGCDGGYPYRAMQYIHKFGGLVTDDAYGYKGICAWGDCGTPVAGTPTCHTEILNAELESKRVASIGGYQLVSLGAEYEALLRLALVKNGPISIAFNANGMDYYLHGVVGCSAENYCDAGAIDHHTPCDPSYLDHAVLIVGYGVEAGVPYWVIKNSWGDAWGEDGYYRIVRGSNHCGVAN 492
[Close]
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Match: UPI000719D898 (cathepsin F-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D898)

HSP 1 Score: 221 bits (563), Expect = 3.650e-61
Identity = 132/338 (39.05%), Postives = 183/338 (54.14%), Query Frame = 3 
Query:  480 LFEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNANSQGPK-YDVTMWADLTREEYKSYQNYGKISDEAKEVGRASAKSLNKLAEENTSCQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTTGCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGGIVPETIYPYRKVFMNGMLGDPVCSDVVHEGNYAATLEIEVAVAES---SMSEDAMARWLILNGPLSVALDAIGMDYYSSGID--MGEYCDPLEIDHAVLIVGYGEEDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDVTTILV 1475
            +F+KF   F K+Y+  D+   R+++F+ N+K   +     QG   Y  T +ADLT EE++  +NY                 L  + +     +   + P++E      +P SFDWRD+GAVT VKNQ  CGSCW+FS TG LEG W +    L  LSEQ+LV CD K ++GCNGG PS +   I   GG+  E  YPY     +G   D  CS         +  E+EV +  S   S  E  MA WL+ NGP+S+ ++A  M +Y  GI      +C+P  +DH VLIVG+GEEDG+ +W IKNSW   WGE GYYR+ R    CG+    T+ ++
Sbjct:    3 VFKKFMTDFNKTYESKDDMMYRYKVFRQNMKSAFKLQKADQGTATYGATQFADLTGEEFR--KNY-----------------LTPVWDLENHPRDTAQIPQIE------VPDSFDWRDHGAVTPVKNQGMCGSCWAFSVTGNLEGKWAIQKGQLYELSEQELVDCD-KLDEGCNGGLPSNAYKEIIRLGGLESEKDYPY-----DGR--DEKCS--------FSKREVEVYINGSVTISKDESDMAAWLVKNGPISIGINANAMQWYFGGISHPWRIFCNPTSLDHGVLIVGFGEEDGISYWIIKNSWGESWGEKGYYRVFRGDGVCGVNQMATSAVI 299
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G512_ECTSI7.520e-22372.40Cathepsin-like proteinase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JC15_9PHAE4.370e-18761.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y246_AURAN4.890e-7744.84Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0Y300_AURAN9.310e-6841.93Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CK28_9STRA4.260e-6437.68Pept_C1 domain-containing protein (Fragment) n=1 T... [more]
A0A7S2BSW9_9STRA8.790e-6443.77Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BCN1_9STRA1.340e-6238.10Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2G239_9STRA5.120e-6237.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2W4U9_9STRA9.790e-6237.09Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
UPI000719D8983.650e-6139.05cathepsin F-like n=1 Tax=Priapulus caudatus TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2431958..2440669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score660.2
Seed ortholog evalue6.8e-187
Seed eggNOG ortholog2880.D7G512
KEGG koko:K01373
KEGG Pathwayko04142,ko04210,map04142,map04210
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Belongs to the peptidase C1 family
EggNOG OGsCOG4870@1,KOG1542@2759
EC3.4.22.41
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons8
Model size3380
Cds size1353
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1301.1prot_C-linearis_contig11.1301.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2433933..2440523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927455.0924766-UTR-C-linearis_contig11:2431957..24325761622927455.0924766-UTR-C-linearis_contig11:2431957..2432576Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2431958..2432576 -
1690879710.666309-UTR-C-linearis_contig11:2431957..24325761690879710.666309-UTR-C-linearis_contig11:2431957..2432576Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2431958..2432576 -
1622927455.102054-UTR-C-linearis_contig11:2432670..24339321622927455.102054-UTR-C-linearis_contig11:2432670..2433932Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2432671..2433932 -
1690879710.6815877-UTR-C-linearis_contig11:2432670..24339321690879710.6815877-UTR-C-linearis_contig11:2432670..2433932Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2432671..2433932 -
1622927455.1970234-UTR-C-linearis_contig11:2440523..24406691622927455.1970234-UTR-C-linearis_contig11:2440523..2440669Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2440524..2440669 -
1690879710.7610793-UTR-C-linearis_contig11:2440523..24406691690879710.7610793-UTR-C-linearis_contig11:2440523..2440669Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2440524..2440669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927455.113167-CDS-C-linearis_contig11:2433932..24341391622927455.113167-CDS-C-linearis_contig11:2433932..2434139Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2433933..2434139 -
1690879710.6934848-CDS-C-linearis_contig11:2433932..24341391690879710.6934848-CDS-C-linearis_contig11:2433932..2434139Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2433933..2434139 -
1622927455.1222804-CDS-C-linearis_contig11:2434470..24346831622927455.1222804-CDS-C-linearis_contig11:2434470..2434683Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2434471..2434683 -
1690879710.7036567-CDS-C-linearis_contig11:2434470..24346831690879710.7036567-CDS-C-linearis_contig11:2434470..2434683Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2434471..2434683 -
1622927455.1307843-CDS-C-linearis_contig11:2435083..24353021622927455.1307843-CDS-C-linearis_contig11:2435083..2435302Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2435084..2435302 -
1690879710.7147505-CDS-C-linearis_contig11:2435083..24353021690879710.7147505-CDS-C-linearis_contig11:2435083..2435302Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2435084..2435302 -
1622927455.1411862-CDS-C-linearis_contig11:2435703..24358861622927455.1411862-CDS-C-linearis_contig11:2435703..2435886Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2435704..2435886 -
1690879710.7272203-CDS-C-linearis_contig11:2435703..24358861690879710.7272203-CDS-C-linearis_contig11:2435703..2435886Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2435704..2435886 -
1622927455.1590211-CDS-C-linearis_contig11:2436157..24362501622927455.1590211-CDS-C-linearis_contig11:2436157..2436250Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2436158..2436250 -
1690879710.7362468-CDS-C-linearis_contig11:2436157..24362501690879710.7362468-CDS-C-linearis_contig11:2436157..2436250Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2436158..2436250 -
1622927455.173519-CDS-C-linearis_contig11:2436776..24370001622927455.173519-CDS-C-linearis_contig11:2436776..2437000Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2436777..2437000 -
1690879710.7461116-CDS-C-linearis_contig11:2436776..24370001690879710.7461116-CDS-C-linearis_contig11:2436776..2437000Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2436777..2437000 -
1622927455.189028-CDS-C-linearis_contig11:2440309..24405231622927455.189028-CDS-C-linearis_contig11:2440309..2440523Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2440310..2440523 -
1690879710.7535982-CDS-C-linearis_contig11:2440309..24405231690879710.7535982-CDS-C-linearis_contig11:2440309..2440523Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2440310..2440523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1301.1

>prot_C-linearis_contig11.1301.1 ID=prot_C-linearis_contig11.1301.1|Name=mRNA_C-linearis_contig11.1301.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=451bp
MTYQSMENANDGMPLLREKSMVQVVEEGSIDELNGTSMSRRSRRGAALGL
IVLALGAVSALSALGGKASSETSAAGTAGTKLAVTGSAGKTAAAARAAPK
MSRLTAEEMEALFEKFAVKFEKSYKDDDEKAMRFEIFKTNLKRIDERNAN
SQGPKYDVTMWADLTREEYKSYQNYGKISDEAKEVGRASAKSLNKLAEEN
TSCQSCTRFPELEQYIDGDLPTSFDWRDYGAVTAVKNQAYCGSCWSFSTT
GCLEGAWYMMGHPLQSLSEQQLVACDTKWNQGCNGGWPSLSMDYISYNGG
IVPETIYPYRKVFMNGMLGDPVCSDVVHEGNYAATLEIEVAVAESSMSED
AMARWLILNGPLSVALDAIGMDYYSSGIDMGEYCDPLEIDHAVLIVGYGE
EDGVKFWTIKNSWKYLWGEAGYYRLVRDVNACGIADDVTTILVEDATVKK
*
back to top

mRNA from alignment at C-linearis_contig11:2431958..2440669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1301.1 ID=mRNA_C-linearis_contig11.1301.1|Name=mRNA_C-linearis_contig11.1301.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8712bp|location=Sequence derived from alignment at C-linearis_contig11:2431958..2440669- (Chordaria linearis ClinC8C monoicous)
CCCCCCTCCGCGGACAGTTTTTTTGGTATTTGCTCTGCTACTCTGCTTGC
GCGAACACTCTCACAGGTGCCTCCACGTGCGATCGGTAGGCAGCCTGGTT
CATTTCCCTCGAGACAGCAGGGAGAGTTACATAGTCAGTCCCGACCATGA
CGTACCAGAGCATGGAGAACGCTAACGACGGCATGCCTTTGCTGCGGGAG
AAGAGCATGGTACAGGTGGTCGAAGAGGGCAGCATTGACGAGCTGAACGG
GACCAGCATGTCTCGAAGGAGCAGAAGGGGAGCGGCACTAGGGTTGATCG
TGCTTGCCCTGGGGGCAGTCTCGGCCTTGTCAGCTCTTGGGGGGAAGGCA
TCGTCTGAAAGTGAGCCAGCTAGGTTTTTGTGTTGTCGCGTGTGTGTTTT
CAACTCGCCGATCACCGATCACGCTTATATCATCGTCCAGATTTTTGTGG
CTCCGTAACTTCTGTTTGTCTCGCTCTCGCAAAACGCTGCACGGTGTAAC
TGAGTAGCTCTTCTCCGGTGACTTTTGGTTGCCCGCATCGTGTTTTCGCA
GGTGCTTTGCTGTGTGCTCAGCCAGTAGGATCGTGCTCGCTCTTTCTCTC
TCGTTTGCAGTGCCACCTAAACACACACACCTTTTCGGTCTGTCCTAAGA
TTTTTTTCAGCATCTTTCTCCACCACCTTGCTCTCCCATCTGTGACAAAG
GCACCAACAGCAGCGCGCTTGCATACTGATGGTAACCGCGTGCCCAAGTG
CAAGACGTCTGGTAAAGTTGTTTCTCAGTCTCAAAACAGCAGCTGTTTGT
AAAATAACAAGAAAATCATACGAACACATGAGAGAAACACCACCCGTTCT
CCGCTGTAGTGTGGTGTGTGCGTGCAAAGACTAAATAAAGAAAAGATGTG
ATGGGCTTGGCTCCATAAGTGTTCAGAGGTGGGCAAGGGCGCCGGAGCTG
CCTCTCAAACGACAAGACCCAGTGAACACCCTTTGGTCACGACTCGCCCT
CCTCTTGCCCCAGTCCTCTGCTTGTTCCTTTGCACGGGACGGAGCGGGTG
CACGAAGCTGGTATGCACGTTTACATGCATGACATAATGCCTAGAATAAG
CTCCATGTGTGTGCCGTGTCCCACCCTACAGCAGTTGTACACGTTCCCAT
CCATCTCGGTTTTACTTTTAGCACGTCTTCACAGAGTGCAATGCTGTCTC
CAGAAAACGGTTCACCTTTCACGCGTGTACCCGAAGCTTTGTGTCACGCT
CAATATCAGTGAACGTTTGTACCAGTGTACAGCCATTCCGAAACAGCACC
CTGCTGCTTTTTGTAGAGTTGATATGAATGTACCTCGGGTGCCCAGATAG
GCACTTGGCGATCGTTTGTCTCCTTTGTTCCACCGTCATACATATGTACC
AAAAATCATAAATCAGATAGGGATGCCTAGTTCTACTGCCGCCTGTAGCC
GAAAGCGTACCACTACGTGTGTACGATTTCTACGTGCTGACCCACCTCCT
TGCTATGCATCAAGCTGGAAAATATCCCAACAGCAGTCGCAGTACATTTA
CCGTGATGATGTGACGATAAAAATAACTAGATACATACGAAGCCGATCGC
CCCGGTGCTCTAGTTGTTTCACCGTAACCATCTACTGCTGTAGCATGCAG
GTTCACGGGTTCGAATCCCGGTGCAAGCGACTTTTTCTCACACAAAATGA
GTTTTTTCTCTTGCTTTCGTTCCTGTGAGTGGAAAGCGCTTAGTTCGTGT
GTATACTTGAGGGAGAGACGGCTGAAACTCGCTGGCGTTAAAAAATACGT
TAAAAAATACAAAAATACTAGCGTACCAGGCAAGCACCGCAGAAGGTGGA
TCGGGGCCTCAGGGAGAGGAGCCTTCAGTGTGACCACGGTTCAGATGTTC
TGGCAAGATGCCCCTGGCAAGGCGCCCTTGCGAACTCTGGAAATAAATGT
GAAGACGAAAAATAAATAAATACAAAGTACCACGGTACAAAACGCGGTAC
TCTGTAGACGTACTACCCTCCACCTGAAAATACATCCAACCCGCCGGCAC
AGGTCTTTCGTATGTAGTCAGTCACAGCAGACAACTATCCTCCTAAAAGC
AGTACAAAATGCAGCTCGCAAATGGTCTAGCCACATATATTTCGATTTGT
ACAAATGTACTTCGAAGGGTGCCTTTATTTCAGGGTGATACGTGGTGTTG
TGATGGGATCGTAAGCGGGTCGGAATTTCGGGACCATCACAAGATACCAT
CCCATCACCACCACGCCAGTCGGAGACACCATCAGTACAGAGGTGGTGGT
TTTTGAACGCTTCCCATCCCAGACACCAAGTATGGAGGTGCTGGTTATTG
AACGCTTCCCATCCCATCTAATTTACCATCACAGCTATTGAAGTTACCAC
CATCTCGTGCCAACAGTCTTCTCTCACCTATTCCTCTTTTCAGAGATCTA
CCACGAATACCACCCCGTACATCTCCGCACCTTCCCCCCCATCCAGCACA
ACGTACTTTCTGAGGGAGGGGTGTGTAAATGCAGAAAATGTGTGGGATAG
AGGGGGTAGGGGTTCGACCCACTACACGCACACACACACGCAACACGTGG
CAGGGAGCGCTGTAGTGCCTGCCCGCTGGTCGCATGTGGGTTTGTTTGCT
CGCACGTTTGTACGCAGGCGTAGATACCACCAGTTGTCAAGCGGAGAGGA
ACTTTTCCGGCCTCAAGCAGGTCCTTGTATTAGTGACTTGCGTGCCGGTA
CCCTGCCCCGTAAGATCGAGCAGATAGATGCTGTTGCTCAGGCTTAACAG
GCGCCTCATCCCCGGCTTTGCGAAAGTAGAGCAGAGCTAGCCGCATTGAA
GGCGAAGCACGATGCAATCGCAAAAGCGGCGGTTACCGCCCAGCAAGCCA
GGGAAGGTAACACTGTCTTGTTACCCTGAACAAGTAGGGTTGCCGTCCGA
CGTTTGAAATGCTGTCACCAGTTTTTTTTTTTTGCTCTTGTTCCAAAGAA
CTTCAAGAACACAGCAGTAATAGCAGTAAACTTTAGAACTTCGGCTGGAG
TTATCGAGTGCCTGCAGTTGGCTGTGGTCTGAAGAACGTTATTTTAAAAA
ACACCCACATGTATTGCTTTTTAAAGGTGGGCAGACGGAAGTTGATTAGT
CTCGTGCTACTACGCGTTTGTAGTATTTTCGTATTTTCCATTTCCAGGGC
GACAACTTACTATATGAATACTTCGTATTTGTTTTATTTCCTGTTGTTTA
TTTGTATGTGTATGCAAGCGGGCGGGTGGGTAGCACTGGGAACACCTCTG
TGTTTCAGAATTCGTTCTGTCACCATCTTCTCGCCACCGCGCCAAGGCAA
AAGCTCCCCCATCCCATCACACTCACCGTCCCACCTTACCATCCCACCCC
ATCACGAGAAACCATCATTTACCATCCCATCCCATCACGACGAGTACGAT
ACCATCCCATCGTAATACCATCAGAAGTGGCGCAAATACCATCCCATCCC
ACGTGATGAGAGGCCTCAAGACATTTTGCCACTGCGGTGGGCCTTCCATC
CCGATGGGGTGGTACGTGGCCCCGCTTTATTTCTCCCCCCCCCCTGACTC
GACCTGACCTACGGTTCCCTCCTTGGTTCCTTTTGTTCTTGTTTTTGTCC
ACTGCTGTCACTCGCGCAGCCTCCGCGGCAGGGACGGCAGGCACCAAGCT
CGCGGTCACGGGGTCTGCGGGGAAGACGGCGGCGGCCGCGAGGGCCGCTC
CCAAAATGTCGCGACTGACCGCGGAGGAGATGGAGGCGCTGTTCGAGAAG
TTCGCGGTCAAGTTCGAGAAGAGCTACAAGGACGACGACGAGAAGGCCAT
GCGCTTCGAGATATTCAAGACAAATCTCAAGCGAATCGACGAGGTAGGCA
GGCAGGGGGCGGGGGCGGTGCGGCGCGGTGCAGTGTTGCTCCTTCGTTGT
ATTGCGTGACTTATCAGCATTCCCTGATTTGTCGATTATTCGTGGATGTA
GACTATAATCCCTGCGGTAGACATTCATGACACGCAAGAGACTTGATATT
GCTTGGCATTTGAGATGTCCTAAAGAGAACCAACGCACTGACACGCGCTC
TTTCACTGCATGGTATGAAAAATGCATGTTACTCGCCTATGCATGAGTAT
TCAGTTGAGACGCCAAGTTCCACCCAACCTCAAGTCTTGTTTTCGTCGCT
CTTCCTCCCATCTACCAACGACTCGCTTGTTGGCGCCGCGTATGCAACCA
GACCCCGACAACTCCAGTGTGTCCCCTCCATTCAACCCCCCGCACGCGTT
GACCGTGTTTTTGTTTTGGAAAATACAAGTACCAGGTATGACCTTTCCAA
CACTCGCCACGACATCTGACGGAGGTTTAACGCGCTGCCCCAATCGTACT
TTTTCTGTTGTCATTACAGAGAAACGCCAACAGCCAAGGACCCAAGTACG
ACGTGACGATGTGGGCCGATCTCACCCGGGAGGAGTACAAGTCCTACCAG
AACTACGGGAAGGTAGGATACATGCGTGAATAGCTGGTACCTTCCGGGGT
TTTCCTGAACTGAAGGAACCCCTCCCCTTCCCGCGTGAAATCTCCTTGAA
TCTGGCATGTGCCGCGGATGAACGGCACTCATTCGACAGGCCCTTTGCGA
GAATTTCGGCATTGAAATCGATGTTCCCGCTCTTCTCTCTCACCTTTCTC
GCCGACCCTCCCCCCCTCCGATCTCGCTCGGCCTTCACGAAACACGAAAC
CCCTCCGTCCTTCCTCCGACACTTTAAACACAGATCTCCGACGAGGCGAA
GGAAGTGGGAAGAGCTAGCGCCAAGTCGCTCAACAAGCTGGCCGAGGAGA
ACACGTCTTGCCAGTCGTGCACGCGCTTCCCGGAGCTGGAGCAGTACATC
GACGGGGACCTGCCGACCTCGTTCGACTGGCGAGACTACGGGGCGGTCAC
GGCTGTCAAGAACCAGGTGCGTTTTGTCTGTCTGCTTGTTGTGTGCTGTG
CTGTGTTGTTTTTGTGTCTCGGGCTTTTTCTCGCGGCGGTCGGCGATTGA
TGATGTTGCTTGGTTACGCGTTCCCTGTCTGGAGGGAGGGGGGCAAGGCT
TGCCGTGTGCTACGTTGCGTTGTGTTGGGGCGGGTTTTGCGGTGCGATTA
CACTGCTGTCGTTCAGTTTTTTTTTGGTTTTTTGGTGAGGTCTCGGCTTT
TTGGACGTGACGACGGTGTTGTGTTTCTTCTTTACAATATACATACATGC
GTCGAATGAGACTCCGCGATGAGCTATAGCTTGGCAGGGGGGATCAACAG
AAACATGTGCAGCCTCTGAACCCCCTCCCCTCCTTTCCCCTGCACGAACA
CCTTTGTTTCCTTCCAGGCGTACTGCGGTTCTTGCTGGTCTTTCAGCACA
ACCGGGTGCCTCGAGGGCGCGTGGTACATGATGGGTCACCCGCTGCAATC
GCTGTCGGAGCAGCAGCTGGTGGCTTGCGACACCAAGTGGAACCAGGGCT
GCAACGGCGGCTGGCCCAGTCTTTCGATGGACTACATCAGCTACAACGGG
GGGATCGTGCCCGAGACCATCTACCCGTACCGGAAGGTGATTTTTGTTTT
GTCGGAATGGTTGGTTCGTTAAGGCATGGACTGATCAAATGGATGGTGGG
TGTTGTACACGTAGTTCGTGCGGCTTGTCTGATGTTTTTGTCCACCCACC
TCGTTCTGTGTTCGAGCTGTGCAGGCGACAGCAGTTGGCAGTGCTGTTTA
TGCAGAGCTTATGTCACGTTTCTCGATAAGTTAAATTACAGCCCCATGAA
CGGAATCGAGAATGGGGCTCGTCGAGATTTCGGCGCAACTCACCTTGGTG
GGCTGCTCTCCCTCACCCATCCCCCCCGCCCCCTCAAACCATCAAGAATC
GTCCCTCTTCTCCCTCCAAACCACAACCCGAAGTCTCATTTTTGTCCTGC
GCCACCCCCTCCCCCACTCCTTCGATTCCGCGACAGGTGTTCATGAACGG
TATGCTGGGCGACCCTGTGTGCTCCGACGTGGTGCATGAGGGCAACTACG
CAGCCACCCTGGAGATCGAAGTTGCCGTGGCCGAGTCTTCGATGAGCGAG
GACGCCATGGCGCGGTGGCTGATCCTGAACGGGCCTCTGTCGGTGGCGCT
GGACGCGATAGGCATGGACTACTACTCCAGCGGCATCGACATGGGAGAGG
TGTGTATGTAGACCCTCGGATAAGTACTTTTCTCCTATTTTTTGTTGCCT
ATCGTGTACGATGTTTGTTTGTGCAGCAAATAGTTTTTTTACACAGTAGT
TATCCATATGTATGGTGCACACATGTTTTCGTTTCCCTGTGCTCTTTGAC
CTGCCCTCCCATCCTCAGCAAGGGCTTCAGTTTGTAATAAAAGTCTTTTT
GCGCGGCGTGTCTCCCTTCACCTCCCAGATATTGTTTCGAATGCTTGTCA
GACCATCTCAAATCCCACCCTACGCCTGTGTGACCTCTAATTGCGACCCT
CGGCCACCCTACAATCCCGCGCCATACCAGTACTGCGACCCACTCGAGAT
CGACCACGCCGTCCTGATCGTCGGCTACGGCGAGGAAGACGGCGTCAAGT
TCTGGACCATCAAGAACTCGTGGAAGTACCTCTGGGGAGAGGCCGGCTAC
TACCGCCTAGTGCGGGACGTAAACGCGTGCGGAATCGCGGACGATGTGAC
AACCATCCTTGTTGAGGATGCCACCGTGAAGAAGTAACAACAAACAGGAC
GAAACAAGATACGTACGCGTGTGTTGTGCTTTTTTTATCGCTTGATTTTG
TGTGTTTTCCAGCCAAGCCTTGGGGGAATCATGACATGTGTGTAATACAT
ATGTGTAAGCTTCCTATGAAGATGCCTCCATACATGGTGCGGCCTGGTCG
CTGTATTTTTTTGGGAGTAGAGGGCGCGAGGAAATAGCACCCTCTTGTCT
CTCGTCTCTTGTCTCTTGTTGCAATACCAAGTTTGAGTGTTGTTTGGCTG
ATCTGTAGTGTACTACAGCAGGGCAGAGTCAAGATGCTCGCGATAAAAAG
CATCAAAGGCATGCACCGCAGGAGGAAGGTGGAGACATCCCCTCCTGTGT
GACCCCGGATGGCAGCCTAGCTAGTTGTTGTGAAGAAGAGGAGGCAGGCT
ACGAAAAAAAACGTTAATGGGTGAGAAGAAGTTAAGATGGTGTGATGTTG
TGCTGTCGTCTTGGTTGAAGCATCCATAGTTTCACTCTGCTGCTCTACAC
GAGATTCAACTGTGGTTTGGAGCCTTAGGCGCGCTGAGTCAACGGGGGGG
GCTGTAGACGGGACTTTTCGACTTGACAAGTTGTTTCGGGTCTCTTGTTC
TCTTTATTCTTAGGCGCGTGAGGTGTGAGGTCCACCGAGGATGAGGTTCA
AATTCCCATCGTGTCATCTTTGCCGTTCTTGGATTCCTTTGTTCGCCGGG
GAGGACGAGGGGTGGGGGTGGGGGGTATGAACGCAGATTTGGCTCTTGTA
CTTGCATGGGTGACGTGTAACGTCGTCGTTCCTTGATGATGAATTGATTG
ATTGATCCGGGCGCGTCGGTGTACGACTCTGGACGATACACTTTGTGTTG
GTGCTCTTGTTAATTTAGGGGGGCCGTGGCCCAAGGACATCTACCCGTTG
GTACCCACTACGGTTCTGGACATGTGCGGTATTTTGCGGTTCCGGTTCCT
TCGTTCCTTCGTTCTTGGAGGTCGTGTTGTGTAGCTTCTGATTTCCCTCG
GAGGGATTTAATTTTGTTTTCTAAATAGGAGGAAAGGAAGCGGACGCGGT
GTCGTCCTCAGCTACATGGATGCCCACACCTATGTACAAGTTTTAGCAGA
CCAGGTTTTCCACGGCAATATCACTCTCTGGTCTCTAGCTCGGTTTGTGT
CTTTTCCACCGTGCTTGGAATATTTCAGTTGTTTATGAGCTTGCAGCAGC
TTGAATGCGTTTGTCGGCGACCGACGCCGCTGGCACAATGGGACGAGAAA
AGGTTTTGTGGCACGCAATTCGCTGATTGGTCAACGCACCTGCGGCGGAA
TTTGAAAAATGGCAAAAAAAACAGGGCACGATTCAAGATCGTTGGACGAC
GGGATGCGTCATCCACGGTGGATTCGAGGACGGCACCTTGGGAGATATTG
GAAAAATCGTGTCTTCGGATGGATGACCTCTTGTCATCACCCTGGCTGAC
TACAGGAAATCGGGGATAGCGATGGATTGGTCAATGGCCGACGACCGATT
TCCGCGTTCAATCTTGCTTGGGGATGGATAGTAAAGGGTACCCCTCAAAC
AGTTGACAGGCCCACCGGAACCCCGGGTGGTTCGTAGCCAAGACAGAGTT
TGTTCGAACCGAGTACGGGCCACTGGCTTGGCAGGAGGCCTCAATGTAGT
GAACCTATTGCCCGTGAGTACTTCGTGTTCTGTCGTTGGGCTATGGAATA
CAGAAGTGCCAGTTAAAAGCACACACAGCTGTACATAAACTCTACCTCCA
GAACTCTGCAATCTGGCTTAATCAAAGTTTTTGTCGCAGCTGTTCTCGGG
TGCTGCGTGGACACCAATCTTCTGGAATGCGGGTCTCACAAGGAAGCCAG
TGGCACGAGCTGCTGCTGTGGACCCGAAGATCGGGAGGTAGAGGGGTCTG
TGGCAGCTACTACTTATATACTACACTCTCGATGTGAATAGTTTGATGTC
GGCGTCCTCGCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:2431958..2440669-

>mRNA_C-linearis_contig11.1301.1 ID=mRNA_C-linearis_contig11.1301.1|Name=mRNA_C-linearis_contig11.1301.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at C-linearis_contig11:2431958..2440669- (Chordaria linearis ClinC8C monoicous)
ATGACGTACCAGAGCATGGAGAACGCTAACGACGGCATGCCTTTGCTGCG
GGAGAAGAGCATGGTACAGGTGGTCGAAGAGGGCAGCATTGACGAGCTGA
ACGGGACCAGCATGTCTCGAAGGAGCAGAAGGGGAGCGGCACTAGGGTTG
ATCGTGCTTGCCCTGGGGGCAGTCTCGGCCTTGTCAGCTCTTGGGGGGAA
GGCATCGTCTGAAAATGACGTACCAGAGCATGGAGAACGCTAACGACGGC
ATGCCTTTGCTGCGGGAGAAGAGCATGGTACAGGTGGTCGAAGAGGGCAG
CATTGACGAGCTGAACGGGACCAGCATGTCTCGAAGGAGCAGAAGGGGAG
CGGCACTAGGGTTGATCGTGCTTGCCCTGGGGGCAGTCTCGGCCTTGTCA
GCTCTTGGGGGGAAGGCATCGTCTGAAACCTCCGCGGCAGGGACGGCAGG
CACCAAGCTCGCGGTCACGGGGTCTGCGGGGAAGACGGCGGCGGCCGCGA
GGGCCGCTCCCAAAATGTCGCGACTGACCGCGGAGGAGATGGAGGCGCTG
TTCGAGAAGTTCGCGGTCAAGTTCGAGAAGAGCTACAAGGACGACGACGA
GAAGGCCATGCGCTTCGAGATATTCAAGACAAATCTCAAGCGAATCGACG
AGCCTCCGCGGCAGGGACGGCAGGCACCAAGCTCGCGGTCACGGGGTCTG
CGGGGAAGACGGCGGCGGCCGCGAGGGCCGCTCCCAAAATGTCGCGACTG
ACCGCGGAGGAGATGGAGGCGCTGTTCGAGAAGTTCGCGGTCAAGTTCGA
GAAGAGCTACAAGGACGACGACGAGAAGGCCATGCGCTTCGAGATATTCA
AGACAAATCTCAAGCGAATCGACGAGAGAAACGCCAACAGCCAAGGACCC
AAGTACGACGTGACGATGTGGGCCGATCTCACCCGGGAGGAGTACAAGTC
CTACCAGAACTACGGGAAGAGAAACGCCAACAGCCAAGGACCCAAGTACG
ACGTGACGATGTGGGCCGATCTCACCCGGGAGGAGTACAAGTCCTACCAG
AACTACGGGAAGATCTCCGACGAGGCGAAGGAAGTGGGAAGAGCTAGCGC
CAAGTCGCTCAACAAGCTGGCCGAGGAGAACACGTCTTGCCAGTCGTGCA
CGCGCTTCCCGGAGCTGGAGCAGTACATCGACGGGGACCTGCCGACCTCG
TTCGACTGGCGAGACTACGGGGCGGTCACGGCTGTCAAGAACCAGATCTC
CGACGAGGCGAAGGAAGTGGGAAGAGCTAGCGCCAAGTCGCTCAACAAGC
TGGCCGAGGAGAACACGTCTTGCCAGTCGTGCACGCGCTTCCCGGAGCTG
GAGCAGTACATCGACGGGGACCTGCCGACCTCGTTCGACTGGCGAGACTA
CGGGGCGGTCACGGCTGTCAAGAACCAGGCGTACTGCGGTTCTTGCTGGT
CTTTCAGCACAACCGGGTGCCTCGAGGGCGCGTGGTACATGATGGGTCAC
CCGCTGCAATCGCTGTCGGAGCAGCAGCTGGTGGCTTGCGACACCAAGTG
GAACCAGGGCTGCAACGGCGGCTGGCCCAGTCTTTCGATGGACTACATCA
GCTACAACGGGGGGATCGTGCCCGAGACCATCTACCCGTACCGGAAGGCG
TACTGCGGTTCTTGCTGGTCTTTCAGCACAACCGGGTGCCTCGAGGGCGC
GTGGTACATGATGGGTCACCCGCTGCAATCGCTGTCGGAGCAGCAGCTGG
TGGCTTGCGACACCAAGTGGAACCAGGGCTGCAACGGCGGCTGGCCCAGT
CTTTCGATGGACTACATCAGCTACAACGGGGGGATCGTGCCCGAGACCAT
CTACCCGTACCGGAAGGTGTTCATGAACGGTATGCTGGGCGACCCTGTGT
GCTCCGACGTGGTGCATGAGGGCAACTACGCAGCCACCCTGGAGATCGAA
GTTGCCGTGGCCGAGTCTTCGATGAGCGAGGACGCCATGGCGCGGTGGCT
GATCCTGAACGGGCCTCTGTCGGTGGCGCTGGACGCGATAGGCATGGACT
ACTACTCCAGCGGCATCGACATGGGAGAGGTGTTCATGAACGGTATGCTG
GGCGACCCTGTGTGCTCCGACGTGGTGCATGAGGGCAACTACGCAGCCAC
CCTGGAGATCGAAGTTGCCGTGGCCGAGTCTTCGATGAGCGAGGACGCCA
TGGCGCGGTGGCTGATCCTGAACGGGCCTCTGTCGGTGGCGCTGGACGCG
ATAGGCATGGACTACTACTCCAGCGGCATCGACATGGGAGAGTACTGCGA
CCCACTCGAGATCGACCACGCCGTCCTGATCGTCGGCTACGGCGAGGAAG
ACGGCGTCAAGTTCTGGACCATCAAGAACTCGTGGAAGTACCTCTGGGGA
GAGGCCGGCTACTACCGCCTAGTGCGGGACGTAAACGCGTGCGGAATCGC
GGACGATGTGACAACCATCCTTGTTGAGGATGCCACCGTGAAGAAGTAAT
ACTGCGACCCACTCGAGATCGACCACGCCGTCCTGATCGTCGGCTACGGC
GAGGAAGACGGCGTCAAGTTCTGGACCATCAAGAACTCGTGGAAGTACCT
CTGGGGAGAGGCCGGCTACTACCGCCTAGTGCGGGACGTAAACGCGTGCG
GAATCGCGGACGATGTGACAACCATCCTTGTTGAGGATGCCACCGTGAAG
AAGTAA
back to top