mRNA_C-linearis_contig11.1288.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1288.1
Unique NamemRNA_C-linearis_contig11.1288.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2295834..2296376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1288.1prot_C-linearis_contig11.1288.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2296001..2296324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.77172-UTR-C-linearis_contig11:2295833..22960001622927428.77172-UTR-C-linearis_contig11:2295833..2296000Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2295834..2296000 +
1690879694.6390748-UTR-C-linearis_contig11:2295833..22960001690879694.6390748-UTR-C-linearis_contig11:2295833..2296000Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2295834..2296000 +
1622927428.8034477-UTR-C-linearis_contig11:2296324..22963761622927428.8034477-UTR-C-linearis_contig11:2296324..2296376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2296325..2296376 +
1690879694.6660194-UTR-C-linearis_contig11:2296324..22963761690879694.6660194-UTR-C-linearis_contig11:2296324..2296376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2296325..2296376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.790366-CDS-C-linearis_contig11:2296000..22963241622927428.790366-CDS-C-linearis_contig11:2296000..2296324Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2296001..2296324 +
1690879694.6487486-CDS-C-linearis_contig11:2296000..22963241690879694.6487486-CDS-C-linearis_contig11:2296000..2296324Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2296001..2296324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1288.1

>prot_C-linearis_contig11.1288.1 ID=prot_C-linearis_contig11.1288.1|Name=mRNA_C-linearis_contig11.1288.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=108bp
MDCVGYQNSHAWNHQQHKTAPCVVGYFCHLFSPASRSEESCGRMVHATPD
CCPCTTPNSEQQRCRLEAELRTQRPADIPTVHTQQESIPKRDGTTEHDPG
TKHTPYM*
back to top

mRNA from alignment at C-linearis_contig11:2295834..2296376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1288.1 ID=mRNA_C-linearis_contig11.1288.1|Name=mRNA_C-linearis_contig11.1288.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at C-linearis_contig11:2295834..2296376+ (Chordaria linearis ClinC8C monoicous)
AAGCGTACCTCCTCGGGATATTTCATGTGGTCCACTTCCTCGCCATACAT
TCCCGCGTCTCCCTAAAAAGAAAAAAGTAGGGGTTCGTGAACGGGAAAAA
CAGGGAGCGACTACTGCGCTCGAAGGCACCTACGCACCAACGATATAACC
TTGGGTTGCCTAGAAAGATGGATTGTGTTGGGTACCAAAACTCCCATGCG
TGGAATCACCAACAGCACAAAACCGCACCGTGTGTGGTAGGGTACTTTTG
CCACCTCTTCTCTCCCGCATCCCGCTCTGAGGAAAGCTGTGGACGCATGG
TTCATGCTACGCCGGACTGCTGCCCGTGCACGACTCCAAACTCAGAACAG
CAGCGATGCCGCCTCGAAGCAGAACTAAGGACGCAGAGACCAGCCGATAT
CCCCACCGTACATACACAACAGGAGTCCATTCCAAAGAGAGACGGCACAA
CAGAACACGACCCGGGGACCAAGCACACCCCCTACATGTAGTCTAATCGC
GGAGCACGAAAAACACCACCATATCATCGCCCATGCAGTGACA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:2295834..2296376+

>mRNA_C-linearis_contig11.1288.1 ID=mRNA_C-linearis_contig11.1288.1|Name=mRNA_C-linearis_contig11.1288.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at C-linearis_contig11:2295834..2296376+ (Chordaria linearis ClinC8C monoicous)
ATGGATTGTGTTGGGTACCAAAACTCCCATGCGTGGAATCACCAACAGCA
CAAAACCGCACCGTGTGTGGTAGGGTACTTTTGCCACCTCTTCTCTCCCG
CATCCCGCTCTGAGGAAAGCTGTGGACGCATGGTTCATGCTACGCCGGAC
TGCTGCCCGTGCACGACTCCAAACTCAGAACAGCAGCGATGCCGCCTCGA
AGCAGAACTAAGGACGCAGAGACCAGCCGATATCCCCACCGTACATACAC
AACAGGAGTCCATTCCAAAGAGAGACGGCACAACAGAACACGACCCGGGG
ACCAAGCACACCCCCTACATGTAGATGGATTGTGTTGGGTACCAAAACTC
CCATGCGTGGAATCACCAACAGCACAAAACCGCACCGTGTGTGGTAGGGT
ACTTTTGCCACCTCTTCTCTCCCGCATCCCGCTCTGAGGAAAGCTGTGGA
CGCATGGTTCATGCTACGCCGGACTGCTGCCCGTGCACGACTCCAAACTC
AGAACAGCAGCGATGCCGCCTCGAAGCAGAACTAAGGACGCAGAGACCAG
CCGATATCCCCACCGTACATACACAACAGGAGTCCATTCCAAAGAGAGAC
GGCACAACAGAACACGACCCGGGGACCAAGCACACCCCCTACATGTAG
back to top