mRNA_C-linearis_contig11.1277.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1277.1
Unique NamemRNA_C-linearis_contig11.1277.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: D7FPN4_ECTSI (acidPPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN4_ECTSI)

HSP 1 Score: 577 bits (1488), Expect = 8.670e-199
Identity = 288/407 (70.76%), Postives = 330/407 (81.08%), Query Frame = 1 
Query:  754 PKSRRRRPWLRVLFALFLIVEALVLYLVNEYSPVFVSEITSVTVTGEDGVTTVVGANPDLLYPITLGGESCAVPEMAGCVTEDASEEMLATVCCSELLDPDSPGPEEAISSLVAFCYVVVIPGLILLMRGFLLGRLWTLRPMRDAPFCTRGPQSEAAWGKRRWHLRVGFFALDAFLGLMAAVVTASLFSTVAKVTCGRPRPNYFALRFYTEHTANGLDYDHWSTTSWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAHPRLSLVLAVLGGFALGALPMSAILIGITRIREYWHRPDDVLVGFVIGLAAAHWSFQLVVLMPFRHEIGSPEWKKDPKWLDDEDKEWEEEEELLRLCGWNVGGSK-KRGPSQMRASSTE--DTEKAPNIQTEPPVRVSDPDEGLGKL 1965
            PK RRR+PWLR LF +FL+VEALVLY VNEYSPV+  E+ SVT T EDG TTVVG NPDL +P++L GE C V +MA CVTE+ +   L+TVCC+ELLDPDS GP+E ISS+VAFCYVVVIPGLILL+RG LLGR+WTLRP R  P  TR  QS+AAWGK+RWHLRVGFFALDAFLGL AAVVTASLFSTVAK T G  + NY+AL FYTEHT NG DY HWS TSWPSGHAATAMSGLVFLAYVLW DL ALVMWRRRAHPRLSLVL +LGGF +  LPMSAILIG+TRIREYWHRPDDVLVGF++G AAAHW+F   VL+PFRHEIGSPEWK +PKWLD+E++ WEEE+E LRLCGW    ++ K G S+  ASS+   D  K P++Q  PP RV++ D+   KL
Sbjct:   46 PKRRRRQPWLRGLFTVFLVVEALVLYAVNEYSPVYDFEVLSVTTTAEDGTTTVVGDNPDLSFPLSLAGEKCGVSDMAACVTEEPTPAALSTVCCTELLDPDSAGPDELISSVVAFCYVVVIPGLILLVRGLLLGRMWTLRPTRGLPCLTRD-QSKAAWGKKRWHLRVGFFALDAFLGLFAAVVTASLFSTVAKGTGGGAKTNYYALLFYTEHTLNGQDYHHWSITSWPSGHAATAMSGLVFLAYVLWSDLVALVMWRRRAHPRLSLVLVMLGGFVVALLPMSAILIGVTRIREYWHRPDDVLVGFIMGFAAAHWAFHFAVLLPFRHEIGSPEWKMNPKWLDEEEQRWEEEDEELRLCGWRRRRARLKEGGSRTGASSSAGGDVAKGPSLQAVPPARVAEADDSARKL 451
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A6H5JPR8_9PHAE (acidPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR8_9PHAE)

HSP 1 Score: 515 bits (1326), Expect = 8.650e-176
Identity = 249/355 (70.14%), Postives = 290/355 (81.69%), Query Frame = 1 
Query:  910 VVGANPDLLYPITLGGESCAVPEMAGCVTEDASEEMLATVCCSELLDPDSPGPEEAISSLVAFCYVVVIPGLILLMRGFLLGRLWTLRPMRDAPFCTRGPQSEAAWGKRRWHLRVGFFALDAFLGLMAAVVTASLFSTVAKVTCGRPRPNYFALRFYTEHTANGLDYDHWSTTSWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAHPRLSLVLAVLGGFALGALPMSAILIGITRIREYWHRPDDVLVGFVIGLAAAHWSFQLVVLMPFRHEIGSPEWKKDPKWLDDEDKEWEEEEELLRLCGWNVGGS--KKRGPSQMRASSTE-DTEKAPNIQTEPPVRVSDPDEGLGKL 1965
            V+G NPDL +P++L GE C V +MA CVTE+ +   L+TVCC+ELLDPDS GP+E ISS+VAFC+VVVIPGLILL+RG LLGR+WT+RP R  P  TR  QS+ AWGK+RWHLRVGFFALDAFLGL AAVVTASLFSTVAKVT GRPRPNY+AL FYTEHT NG D+ HWS TSWPSGHAATAMSGLVFLAYVLW DL ALVMWRRRAHPRLSLVL +LGGF +  LPMSAIL+G++RIREYWHRPDDVLVGF++G AAAHW+FQ  VL+PFRHEIGSPEWK +PKWLD+E++ WEEE+E LRLCGW    +  K+ GP    +SS   D  K P++Q  PP RV++ D+   KL
Sbjct:    2 VIGDNPDLSFPLSLAGEKCGVSDMAACVTEEPTAAALSTVCCTELLDPDSAGPDELISSIVAFCFVVVIPGLILLVRGLLLGRMWTIRPTRGLPCLTRA-QSKTAWGKKRWHLRVGFFALDAFLGLFAAVVTASLFSTVAKVTVGRPRPNYYALLFYTEHTLNGQDFQHWSITSWPSGHAATAMSGLVFLAYVLWSDLVALVMWRRRAHPRLSLVLVMLGGFVVALLPMSAILVGVSRIREYWHRPDDVLVGFIMGFAAAHWAFQFAVLLPFRHEIGSPEWKMNPKWLDEEEQRWEEEDEELRLCGWRRRRARLKEGGPRTGTSSSAGGDVAKGPSLQAVPPARVAEADDSARKL 355
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A836CC24_9STRA (acidPPc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC24_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.580e-14
Identity = 58/163 (35.58%), Postives = 84/163 (51.53%), Query Frame = 1 
Query: 1159 LWTLRPMRDAPFCT---------RGPQSEAAWG-----KRRWHLRVGFFAL---------DAFLGLMAAVVTASLFSTVAKVTCGRPRPNYFALRFYTEHTANGLDYDHWST----TSWPSGHAATAMSGLVFLAYVLWRDLGA-LVMWRRRAHPRLSLVLAV 1563
            +W     R + FC          RG  + AA G     K  WH  V F            DA++GL+A++  ASL + + K+  GRPRPNY+AL+++ EH+       H +T    TSW SGH++ +++G++FL  VLWRD+   LV W R     L LV A+
Sbjct:  284 VWCFAAHRRSDFCLMKALSLCGRRGRPAAAADGANGNSKPDWHTLVCFSRRVRLSADAHWDAWIGLLASLAMASLMTELTKLLVGRPRPNYYALKYFGEHSVVDQGSIHDATRSANTSWVSGHSSLSLAGVLFLTLVLWRDVSVWLVRWGRPHRSWLPLVTAM 446
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A835ZFV7_9STRA (Phosphatidic acid phosphatase type 2/haloperoxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFV7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.160e-10
Identity = 54/140 (38.57%), Postives = 71/140 (50.71%), Query Frame = 1 
Query: 1288 MAAVVTASLFSTVAKVTCGRPRPNYFALRFYTEHT------ANGLDYDHWSTTSWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAHPRLSLVLAVLGGFALGALPMSAILIGITRIREYWHRPDDVLVGFVIGLAAA 1689
            MA V  A+LF    K   GRPRPNY AL      +      + G    H   TS+PS H++ AM+   F A V+W D        RR  P  +  LA  G  AL ++   AI +G+TRI++YWH PDDV  G+ +G   A
Sbjct:    1 MACVSIATLF---IKKGVGRPRPNYAALVEVVAQSPALAAGSAGALGGH-PRTSFPSAHSSHAMAAFGFFALVVWGDAA------RRVGPLWARNLA--GMVALLSMAC-AIWVGMTRIQDYWHHPDDVFAGWALGALCA 127
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A2I0JX14_PUNGR (acidPPc domain-containing protein n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JX14_PUNGR)

HSP 1 Score: 71.2 bits (173), Expect = 5.320e-10
Identity = 53/168 (31.55%), Postives = 83/168 (49.40%), Query Frame = 1 
Query: 1273 AFLGLMAAVVTASLFSTVAKVTCGRPRPNYFALRF------YTEHTANGLDYDHWSTT-----SWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAH-PRLSLVLAVLGGFALGALP-MSAILIGITRIREYWHRPDDVLVGFVIGLAAAHWSFQLVVLMPFRHEI 1737
            A LGL+ AV   ++ +   KV  GRPRPN+F   F      +   T + L Y   +       S+PSGH + + +GLVFL+   W   G +  +    H  +L +V           LP ++AIL+G++R+ +YWH   DV  G +IG   +  +F  +   PF H++
Sbjct:   99 ATLGLLYAVGLTAVITDAIKVAVGRPRPNFFYRCFPDGEPVFDNVTHDVLCYGDKAVIKEGYKSFPSGHTSWSFAGLVFLS---WYMSGKIRAFNHGGHVAKLCIVF----------LPVLAAILVGVSRVDDYWHHWQDVFTGAIIGTVLS--TFCYLQFFPFPHDV 251
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A8J5G304_ZINOF (acidPPc domain-containing protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5G304_ZINOF)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-9
Identity = 51/159 (32.08%), Postives = 81/159 (50.94%), Query Frame = 1 
Query: 1273 AFLGLMAAVVTASLFSTVAKVTCGRPRPNYFALRFYTEHTANGLDYDHWSTT---------------SWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAHPRLSLVLAVLGGFALGALPM-SAILIGITRIREYWHRPDDVLVGFVIGLAAAHWSF 1701
            A LGL+ +V   ++ + V K   GRPRP++F   F         DYD+++T+               S+PSGHA+   +GL FL++ L    G + ++  R H         +    L ALP+ +A L+ I+R+ +YWH   DV+VG +IGL  A + +
Sbjct:   27 AILGLLYSVFITAVITDVIKDAVGRPRPDFFWRCF----PDGKEDYDNFTTSVICHGGKSEINEGHKSFPSGHASWCFAGLGFLSWYL---AGKMRVFDGRGH---------VAKLCLVALPLLAASLVAISRVDDYWHHWQDVVVGGLIGLVVASFCY 169
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A2C9WGV2_MANES (acidPPc domain-containing protein n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9WGV2_MANES)

HSP 1 Score: 70.9 bits (172), Expect = 1.360e-9
Identity = 54/170 (31.76%), Postives = 83/170 (48.82%), Query Frame = 1 
Query: 1273 AFLGLMAAVVTASLFSTVAKVTCGRPRPNYFALRFYTEHTA-NGLDYD---HWST-------TSWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAH-PRLSLVLAVLGGFALGALPMSAILIGITRIREYWHRPDDVLVGFVIGLAAAHWSFQLVVLMPFRHEIGSP 1746
            A LGL+ +++   + +   K   GRPRPN+F   F     A + + YD   H           S+PSGH++ + +GL FLA   W   G L ++ RR H  +L +VL  +         + AIL+GI+R+ +YWH   DV  G +IG   A + +      P+  E  +P
Sbjct:   99 AILGLLFSLLATGVITDAIKDAVGRPRPNFFWRCFPDGKAAFDPVTYDVICHGDAHIIKEGYKSFPSGHSSWSFAGLTFLA---WYMSGKLRVFDRRGHVAKLCIVLIPV---------LIAILVGISRVDDYWHHWTDVFAGALIGTIVAAFCYLQFFPYPYETEGWAP 256
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A453QJG7_AEGTS (acidPPc domain-containing protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453QJG7_AEGTS)

HSP 1 Score: 67.8 bits (164), Expect = 3.220e-9
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 1 
Query: 1279 LGLMAAVVTASLFSTVAKVTCGRPRPNYFALRF------YTEHTANGLDYDHWSTT-----SWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAHPRLSLVLAVLGGFALGALPM-SAILIGITRIREYWHRPDDVLVGFVIGLAAAHWSFQLVVLMPFRHEIGSP 1746
            LG++ +V+  ++ +   K   GRPRP++F   F      Y   T   L +   S       S+PSGHA+ + +GL FL + L    G + ++ R+ H         +    +  LP+ +A L+ ++R+ +YWH   DV  G +IGL  A + +      PF  +  SP
Sbjct:   38 LGILYSVLITAVITDAIKDGVGRPRPDFFWRCFPDGKDLYDNVTTGVLCHGEKSVIKEGHKSFPSGHASWSFAGLGFLTWYL---TGKIAVFDRKGH---------IAKLCIIVLPLLTAALVAVSRVDDYWHHWQDVFAGAIIGLTVASFCYLQFFPYPFDADGASP 193
[Close]
BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A8H6WCM8_9AGAR (Lipid phosphate phosphatase 1 n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6WCM8_9AGAR)

HSP 1 Score: 68.6 bits (166), Expect = 7.770e-9
Identity = 57/178 (32.02%), Postives = 85/178 (47.75%), Query Frame = 1 
Query: 1279 LGLMAAVVTASLFSTVAKVTCGRPRPNYFA-LRFYTEHTA------NGLDYDHWSTTSWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAH-PRLSLVLAVLGGFALGALPMS-AILIGITRIREYWHRPDDVLVGFVIGLAAAHWSFQLVVLMPFRHEIGSPEWKKDPKWLDDED 1785
            L L+AA     LF+ + K   GR RP++ +  ++ TE         N LD       S+PSGH++ A +G+ FLA+ L    G    W  +A  P  SL  + L  F    LP+  AI +G+TR+ +Y H  +DV+VG ++G+  A  S+      PF      P     P+ L   D
Sbjct:  103 LALLAARGMTRLFTNILKNKVGRLRPDFLSRCKWDTEKLKCTGKADNILD----GRRSFPSGHSSAAFAGMTFLAFWL---AGQTAAWCFQAQLPAASLRSSRLARFCFTLLPIWWAIYVGVTRVEDYRHHKEDVIVGGLMGIICASISYLAFWPSPFSESSFQPYTYGQPRTLSSSD 273
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BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Match: A0A7J7CKD5_TRIWF (Lipid phosphate phosphatase 2-like isoform X1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CKD5_TRIWF)

HSP 1 Score: 68.6 bits (166), Expect = 8.180e-9
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 1 
Query: 1273 AFLGLMAAVVTASLFSTVAKVTCGRPRPNYFALRF------YTEHTANGLDYDHWSTT-----SWPSGHAATAMSGLVFLAYVLWRDLGALVMWRRRAH-PRLSLVLAVLGGFALGALPMSAILIGITRIREYWHRPDDVLVGFVIGLAAAHWSFQLV 1710
            A LG++ +V+   + +   K   GRPRPN+F   F      + E + N   Y   +       S+PSGH + + +GL FLA   W   G +  + RR H  +L +VL  +         ++A+L+G++R+ +YWH   DV  G +IG A  H  F+++
Sbjct:   99 ALLGILYSVLITGVITDAIKDAVGRPRPNFFWRCFPDGNGVFDEISGNVACYGDPAIIKEGYKSFPSGHTSWSFAGLTFLA---WYIAGKIKAFDRRGHVAKLCIVLLPI---------LAAVLVGVSRVDDYWHHWTDVFAGALIGWAP-HAYFEML 243
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN4_ECTSI8.670e-19970.76acidPPc domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JPR8_9PHAE8.650e-17670.14acidPPc domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CC24_9STRA7.580e-1435.58acidPPc domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZFV7_9STRA2.160e-1038.57Phosphatidic acid phosphatase type 2/haloperoxidas... [more]
A0A2I0JX14_PUNGR5.320e-1031.55acidPPc domain-containing protein n=2 Tax=Punica g... [more]
A0A8J5G304_ZINOF1.190e-932.08acidPPc domain-containing protein n=4 Tax=Zingiber... [more]
A0A2C9WGV2_MANES1.360e-931.76acidPPc domain-containing protein n=2 Tax=Manihot ... [more]
A0A453QJG7_AEGTS3.220e-928.57acidPPc domain-containing protein n=3 Tax=Aegilops... [more]
A0A8H6WCM8_9AGAR7.770e-932.02Lipid phosphate phosphatase 1 n=1 Tax=Mycena indig... [more]
A0A7J7CKD5_TRIWF8.180e-931.01Lipid phosphate phosphatase 2-like isoform X1 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2159890..2166082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog2880.D7G5S0
KEGG rclassRC00017
KEGG koko:K18693
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01110,map00561,map00564,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidate phosphatase activity
EggNOG OGsCOG0671@1,KOG3030@2759
EC3.1.3.4,3.1.3.81
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons9
Model size2135
Cds size1389
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927450.7379708-UTR-C-linearis_contig11:2159889..21604831622927450.7379708-UTR-C-linearis_contig11:2159889..2160483Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2159890..2160483 +
1690879707.9412258-UTR-C-linearis_contig11:2159889..21604831690879707.9412258-UTR-C-linearis_contig11:2159889..2160483Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2159890..2160483 +
1622927450.8579364-UTR-C-linearis_contig11:2165930..21660821622927450.8579364-UTR-C-linearis_contig11:2165930..2166082Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2165931..2166082 +
1690879708.0527356-UTR-C-linearis_contig11:2165930..21660821690879708.0527356-UTR-C-linearis_contig11:2165930..2166082Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2165931..2166082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927450.7509794-CDS-C-linearis_contig11:2160483..21607981622927450.7509794-CDS-C-linearis_contig11:2160483..2160798Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2160484..2160798 +
1690879707.954195-CDS-C-linearis_contig11:2160483..21607981690879707.954195-CDS-C-linearis_contig11:2160483..2160798Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2160484..2160798 +
1622927450.761935-CDS-C-linearis_contig11:2161224..21614351622927450.761935-CDS-C-linearis_contig11:2161224..2161435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2161225..2161435 +
1690879707.9648707-CDS-C-linearis_contig11:2161224..21614351690879707.9648707-CDS-C-linearis_contig11:2161224..2161435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2161225..2161435 +
1622927450.772148-CDS-C-linearis_contig11:2161921..21620081622927450.772148-CDS-C-linearis_contig11:2161921..2162008Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2161922..2162008 +
1690879707.9750092-CDS-C-linearis_contig11:2161921..21620081690879707.9750092-CDS-C-linearis_contig11:2161921..2162008Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2161922..2162008 +
1622927450.7810464-CDS-C-linearis_contig11:2162845..21629701622927450.7810464-CDS-C-linearis_contig11:2162845..2162970Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2162846..2162970 +
1690879707.9866228-CDS-C-linearis_contig11:2162845..21629701690879707.9866228-CDS-C-linearis_contig11:2162845..2162970Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2162846..2162970 +
1622927450.7928615-CDS-C-linearis_contig11:2163291..21633631622927450.7928615-CDS-C-linearis_contig11:2163291..2163363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2163292..2163363 +
1690879707.9992924-CDS-C-linearis_contig11:2163291..21633631690879707.9992924-CDS-C-linearis_contig11:2163291..2163363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2163292..2163363 +
1622927450.8130019-CDS-C-linearis_contig11:2163976..21640901622927450.8130019-CDS-C-linearis_contig11:2163976..2164090Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2163977..2164090 +
1690879708.012713-CDS-C-linearis_contig11:2163976..21640901690879708.012713-CDS-C-linearis_contig11:2163976..2164090Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2163977..2164090 +
1622927450.8249803-CDS-C-linearis_contig11:2164661..21647651622927450.8249803-CDS-C-linearis_contig11:2164661..2164765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2164662..2164765 +
1690879708.0264895-CDS-C-linearis_contig11:2164661..21647651690879708.0264895-CDS-C-linearis_contig11:2164661..2164765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2164662..2164765 +
1622927450.8359807-CDS-C-linearis_contig11:2164939..21652311622927450.8359807-CDS-C-linearis_contig11:2164939..2165231Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2164940..2165231 +
1690879708.0350475-CDS-C-linearis_contig11:2164939..21652311690879708.0350475-CDS-C-linearis_contig11:2164939..2165231Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2164940..2165231 +
1622927450.8466213-CDS-C-linearis_contig11:2165861..21659301622927450.8466213-CDS-C-linearis_contig11:2165861..2165930Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2165862..2165930 +
1690879708.0436938-CDS-C-linearis_contig11:2165861..21659301690879708.0436938-CDS-C-linearis_contig11:2165861..2165930Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2165862..2165930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1277.1prot_C-linearis_contig11.1277.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2160484..2165930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1277.1

>prot_C-linearis_contig11.1277.1 ID=prot_C-linearis_contig11.1277.1|Name=mRNA_C-linearis_contig11.1277.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=463bp
MGSRRGLSRSGSERLAVEAGREGEDSSSGRAIEEKEKDGPDDPGGRSAMP
SSPPKSRRRRPWLRVLFALFLIVEALVLYLVNEYSPVFVSEITSVTVTGE
DGVTTVVGANPDLLYPITLGGESCAVPEMAGCVTEDASEEMLATVCCSEL
LDPDSPGPEEAISSLVAFCYVVVIPGLILLMRGFLLGRLWTLRPMRDAPF
CTRGPQSEAAWGKRRWHLRVGFFALDAFLGLMAAVVTASLFSTVAKVTCG
RPRPNYFALRFYTEHTANGLDYDHWSTTSWPSGHAATAMSGLVFLAYVLW
RDLGALVMWRRRAHPRLSLVLAVLGGFALGALPMSAILIGITRIREYWHR
PDDVLVGFVIGLAAAHWSFQLVVLMPFRHEIGSPEWKKDPKWLDDEDKEW
EEEEELLRLCGWNVGGSKKRGPSQMRASSTEDTEKAPNIQTEPPVRVSDP
DEGLGKLYFSPV*
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mRNA from alignment at C-linearis_contig11:2159890..2166082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1277.1 ID=mRNA_C-linearis_contig11.1277.1|Name=mRNA_C-linearis_contig11.1277.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6193bp|location=Sequence derived from alignment at C-linearis_contig11:2159890..2166082+ (Chordaria linearis ClinC8C monoicous)
AATCGCCGAAACGAGGCTCTCGAGGGCTGAGCGCGCATTCTCGCGAGTAT
GAAAGTATGTATATTTATAGGCATGTTTGTCAAGACCATTGGGGATCTGG
CCGGTATTAGTCTGTCCCACTGGCCGTAAAAGAGTCCCCTGGGCTGCGCG
ATATGGAAGCAGGCGCAAAGAGGATTTTCCGGCAATCGTCTTGTGCTTTG
TTCTTGGGTCTAGAAAGAAAGAAGAAAAATAAATACCAGGGAAACGTGCA
AAGGTCCATCAATGAAAACTGCACCTCGTGGGGTGCGTGACTGCCGAACA
TGGCGTCTGCGGCGCGGCGAAACTCGAGCGATGAGCGCGCCGGCAATATA
CTGTACCTGCAAAATATTCAGAAAATATTGATATAATTAATTCATCGAGC
AAAATACAGGGAAATACATCCCGATACGGAGTTCTCAGCAGTTTCTCCCC
CTGCTCGAACCGGCCATCAACGACCACCCTCTCTCCCTCCTGCGGTGTGC
CAACTGACCCCACCCCCCTCTCGTCGCAGCAGGCCAGCCAGGGAGGCCGC
CCCTCCGGAAGGCACGGGACAACCAAGAAACAGCAGTAGTCTGGATGGGC
AGCCGTCGGGGACTGTCCCGATCGGGGTCTGAAAGACTCGCAGTAGAGGC
CGGGCGTGAGGGCGAAGACAGCAGTAGCGGCCGAGCTATCGAGGAGAAGG
AGAAGGACGGCCCAGATGACCCCGGCGGGCGATCCGCGATGCCGAGCTCC
CCGCCAAAGAGCCGGAGGAGGCGGCCGTGGCTCCGCGTGCTGTTCGCGCT
GTTCCTGATCGTGGAGGCCCTGGTGCTGTACCTGGTGAACGAGTACAGCC
CGGTGTTCGTGTCCGAGATCACCTCGGTCACGGTTACGGGCGAGGATGGC
GTCACGACGGTGCGTGGTTGTTGTTGTCGTTTGTAAGCAGGGGGTAGGGG
TAGGAGCGATGTGCGGTTTCATTTCTGTCGACTGTCGACGAGCTCTCGCT
TCTCCTCCGTCGTTGCTTCTCTTTGTCTTTGGCTGCGAGCCCCCCTCCCT
GCTCCTCCGTCTGGTGCTGTTTTGTTCTACTTTTTTTCTCATTTTCATCG
TTGCATTGGACTCCGGTGCGTCCACCGGTCGCTCGTCTGTCCTAGACACA
ACAACGTGTAAATCGCGTTGGATGGATTGTAGAGGCCCGTGCGTGCCTGG
TGCTTTCGAGTCCACCGCGTTTGAGATTGGATTAGTAAAAACCCGAAGTA
AATCTTGTGTTTTGTTTGGTTCCTTGTCCTGCCGTTGCTGCCGCCGTTGC
TGCCGCCGTTGCTGCTGCTGCTGCTGCTGCTGCAGGTTGTCGGTGCCAAC
CCCGACTTGTTGTATCCAATCACGCTCGGGGGGGAATCCTGCGCGGTGCC
AGAGATGGCGGGGTGCGTGACGGAGGATGCCTCGGAGGAGATGTTAGCGA
CGGTATGCTGCTCGGAGCTGCTGGACCCAGATAGCCCGGGACCGGAGGAG
GCGATTTCTTCGCTCGTGGCGTTCTGCTACGTTGTCGTCATCCCCGGTAA
GAGCAGCACGCAGCAGGGGGCATCTAGAGGGGCAGAAATAGGGGCCCAGC
GTTCTTGGAGAGGCAGATGTATAGAGATGAGAGATGTATAGAGATGCGCA
GGAGAGGGGTGGGAAGAACAGAGTCAGGGGTCGAAAAGCGGGCGTGCACA
ATAAGTAGCATGTAACCTCACGAATGGAGAGGGTATGTCGTGCGGCGGTA
TCGTGCTGTAAATCGGCAGTGGGCGCACACAGGACGGCGCGGGATTGTTG
CCTGATGTGCTACTTCTGCTGGTGGTGGTTCTTGGTCCGAGCCTGACAAA
GGACGCTATACCTACCAAATTCCTGCTCTCTTTTTCTAACCTTTGTTTAC
GTTACGCTTCGGCCCGGACCGCTCGTTCCGGGCTTGCGCTTTTGCCCTTG
CCCTTGCCTTGCCGTCCTCGCTTTTTGCTGCATGCCATGCCATGCCTTCG
CCGCGCGGTTGCCGTGGACTACTCGCCGCCAGGGTTGATTTTGTTGATGA
GAGGCTTCCTGCTGGGAAGGTTGTGGACACTCAGGCCGATGAGGGATGCG
CCGTTTTGCACACGCGGACGTGAGTTCATACGAAGTATGTGGGAAAGCAA
CCGCTGGACTCAAAATAGTCCGTTCGCCTTTTTTTTCGATGTTTTTTTTT
GCGTGTGTTTGTTCCTGTTTTCGTTCCAGGCGCGCTGTTGTGGAATCTAA
GTAGAACCCTTTTGCAAGCCCGAGTCGTTAGAAAGTAACTGTCAAAGCTT
GAAGCCATCCCTCCCCCACTTCGTGAAGCCCAAAGGATCAAAATTTTGGT
TTCTCCAGTGGAGGGAGGCTATCATGTGTTGCCCACCTATGTTGTGTGGT
TCAGACGGGACTGGTTCCCCCAGGCACGACAAGGGGGGGGTTCGCGCAGG
TACCTAGTCGTCCGGTCGTCCGATCCCCCCCCTGTTGGACCTCGCTTGGT
ACCATACCATTCTCGACGAACAGCAACAGCAACGGCAGAAGGGGTTAGAC
CTTGCTTGTGTTCCTTGTCCTTGTTCTTCGACTCCACTCCGCTCGCTGTC
GGCCGAGACGACCCCGCAAGGTTAAGGTTAAGGTTAAGGTTAAGGTTGGG
GCCTGCCTTAGCGTGCCTTAGCGTGCTGTGCGTTAGGCAACGTGGTGGGC
GCTGAAACAAGCAAGCCGCGGGGCGTGACGTATGGTAACATGTAGTCTTT
CTACTATAGAAACCTCGTGAGGTAGGTGCGCGCCGAGCTGAAGTGCAGCA
GGTGCCTCCGAATGTATGCATCTGCATCGTGCGGGCCCCGTCCAGTCCAT
GCTCTGCTGTGTCGACCATTCGACCAATCGACCACTCGACCATTAGTGTA
ATTGTCCTTTGGTTTCCACACGTTCCTCGCCCGACCCTCGCTCGGTTTCT
GCGCAGCTCAAAGCGAGGCCGCGTGGGGCAAGAGACGATGGCATCTGCGG
GTGGGGTTCTTCGCTCTAGACGCCTTCCTGGGGCTGATGGCCGCGGTTGT
GACGGCCTCGCTGTTTTCTACGGTCGCAAAGGTGCGCCAACCATCTTAAC
TCCATGTATTGCTTGCCTTGCCTGACTGGGTCAAGCGCTGCCGCAAAGCC
CTCTGACGGAACGACATGTAGAGGCGTTGAGCTTTCGAAAAAAAGGGAGG
GAGGGAGGGAGGGAGGGaGGGAGAAGTTGCCGGGGGGGCTGCTGGAACAC
TCTAGACCCTCGTCGCGCTCGAGCTGTCTGTCGACTCCGCCTTACCAAGG
TCTGCGGTGTATTCCACTGCGGCGTGTGCGTCAGATGAAGATGAAACTCG
TTCCTGCACCCTTATTTTCTTGTCCCTGCCTTACGTCAACGCGATCTTGA
AGGTTACTTGCGGCCGGCCAAGACCAAACTATTTCGCGCTCCGCTTTTAC
ACGGAACACACGGCGAACGGGCTGGTGAGCGAGTGGTCGTAGTTGTTGCC
GTTTTCTGGGACTACCCAATTATTATGCGCGTCATCGCGGCGGCTTTGAT
TAGATGGCAATCAATTCGGCACCTTGCCGTGAGCCGTTTTGGGTCACGGT
ACCACTACTTTTTACCACCGTATCGTTCGCCGGGCGCTGCGTTCTTTTTT
CCGTAGGCCGTGGCATCAGTCGATCGAACGTGATCGGGGTGGCCATCGGC
CATACCTTTCTGTCTCAGGATGAGACGGCACACCTGCCACGTTTTATTTT
TGTGCCTCACGGACGCAACGCGCTACGGCGGCGTGATCTGGGCTGGTCAC
GAGCCCGTCGCTCACGTGTGGTTCGTGCCAGCAGTGTCGCGCACTCCCCC
CGCACTGGCTGTTGTCGTGCTTTCGTGCACGCTTCTCCCCGCGCGCCAGG
CGCAAGTCACGTGGGCGCAAGCCACAGGCAGTAGTAGCTATTTCCTGAAA
ATCGCCGCAGAACCCCACGTCTGCCCGCGAATATTTGTCTTCTTGTGGAT
TTGTCAACCTTGCTGTCTACCTCTCCCGGCTTCGTCCTCCATTGCTCCAT
TTCACCTTGCTTTGTGTGCGGTTTTCTCGTTTCGAAGGACTATGACCATT
GGTCGACCACTAGCTGGCCGTCGGGGCACGCGGCGACGGCCATGTCGGGA
CTTGTATTCCTCGCCTACGTGCTGTGGCGGGACCTTGGAGCGCTTGTCAT
GGTACGCACGGGCCGACGAACCGCTGGATCCCTTCGCGTCAAGAGCGTTC
CGTCTTGGCTTTGCGCCATGGATGTTAGCTGTCTACCTCGGTGGCTTCGT
TTGCCTGTTGGCCTTGCCGCGCACTACAGAGTCTGCCGAGTTGGCGTTTC
AACTCGGGTCGGATGGTTGTTCCCTGCCGTGCGTTGCTGGAATACGGCAG
TCTAGATGCTTTTCTTCCCTGCCGTGGCATCATCGCCTGCAAATAGGGGG
TGTTGTGGCTTGTCCTGGTATGCCCTGTTGTTCCTGTGCAACCGATTAGC
ATTAACGTCCGTTTTTTGGCCCCGGCATGTTCGAGTCTAGTATGTAGGCA
TGTCGGTACCGCTGTTGCGATACCCTGTGATGTTGCTGCTGCGGCGACTG
CTGCGGCACGAGTGTTGTTGTGTGTCGCTCAACTCGCCGTGCCGAAGAAT
GTTCGGCCCACCCCTTGGAAGAGCTGAACGTACTCTCGCTTTGTTTCCCT
TGTGGTTGCGTCCTTTCGGTGCTGATTGCTTGATGGTGCTGGTTGCTGCT
GGTTTCTGCGTGCTTGATGCAGTGGCGTCGTCGTGCGCACCCGAGACTGT
CGCTGGTACTGGCGGTGCTGGGCGGGTTTGCGTTGGGAGCGTTGCCGATG
AGCGCAATCCTAATCGGGATCACTCGGTGAGTCGAGCATTCAGAACACAG
CATCTTAGCCAGTACACAGCAGCACCCTATGGGATGGATCCTCCCGGCCT
GCGTTCCAATTCTTCCTTCCACTTCCGCGTAAACGCAAACAGTAAACACT
GACCACGGAACAACACCACCAACACCCCAACACCTACGCCAACGCTACAG
AATTCGAGAGTACTGGCATCGCCCAGACGATGTCCTGGTGGGCTTCGTCA
TAGGCCTCGCGGCGGCCCACTGGTCCTTCCAGTTGGTGGTGCTGATGCCC
TTCCGCCACGAGATCGGGTCGCCCGAGTGGAAGAAGGACCCCAAGTGGCT
GGACGACGAAGACAAGGAGTGGGAGGAGGAGGAGGAGCTGCTGCGCCTGT
GCGGGTGGAATGTGGGCGGCAGCAAGAAGAGGGGGCCTTCCCAGATGCGA
GCGTCTTCGACGGAGGACACCGAGAAAGCCCCAAATATACAGGTGCGGTG
CGGTGCTGTGTGCAGTACTGTGTGCGGTGCTATGTGGGGTGTTGTGTGCG
GTGCGGTACGGGCGCGCGTAGGTAAGAAGGATTTGGCTGGGTGCTGTGCA
CGAGGAGGTTGACGGGAGGAGTGAGCCTCTGGCAGCCTTGGGTGCTGTGG
CGATCAACTTCTAAATTTAGTGAAGATGTTTGGTTGAGGGAGTAGGAGGT
GGTAGGCGCCTAGAACACCCTGCGTGCGCATGATGTGTGTGGTGTGATAG
GGAAGCACTCGCACGAATTGTGTTGGGAGGGGGGGGTGAGGTCCGGCAAG
GGGGATTACTTGCCTACGACAGGGATACATAACGTCAGATTCGGACTACG
ATCGGTACAGCGGATCGGGCATACATGCCAAGGCATCCCACTCCGCTGGA
TCTTTCGAGGTCCGTGGAACAGCAGTTGTACCCCATGGCGTGATGGCGCG
CTCAACACTGCTGTTTCATGCCAAGGTCCGCACCTTGTCTGCGACGCCAC
ACGTATATTGCATCGTTTCACGCCACTACGTCATGAGTCATCGCTGTTTC
TTGGCATGGTTGCGTAACGATCTGCTCCGTTGTGCCCGTACCATTGGATT
ATTGGATTTTCGCGCGGCACAGACGGAGCCCCCGGTTCGCGTTTCCGACC
CAGACGAGGGCTTGGGGAAGCTATACTTCTCCCCCGTCTAGTCTAGTCTA
GTCTAGTCTAGTCTAGTCTACGGTGGACAGCGGCTGCTGCTGGTGCTTCT
ACTACGTGCGCGGCTGGACTGCTTCTATTTTTGACAGTTGAAGTGTGCTG
TGCGAGGGGAGATGGGGGGCGGAGAGGGAGTGGGAGCGGGAGC
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Coding sequence (CDS) from alignment at C-linearis_contig11:2159890..2166082+

>mRNA_C-linearis_contig11.1277.1 ID=mRNA_C-linearis_contig11.1277.1|Name=mRNA_C-linearis_contig11.1277.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2778bp|location=Sequence derived from alignment at C-linearis_contig11:2159890..2166082+ (Chordaria linearis ClinC8C monoicous)
ATGGGCAGCCGTCGGGGACTGTCCCGATCGGGGTCTGAAAGACTCGCAGT
AGAGGCCGGGCGTGAGGGCGAAGACAGCAGTAGCGGCCGAGCTATCGAGG
AGAAGGAGAAGGACGGCCCAGATGACCCCGGCGGGCGATCCGCGATGCCG
AGCTCCCCGCCAAAGAGCCGGAGGAGGCGGCCGTGGCTCCGCGTGCTGTT
CGCGCTGTTCCTGATCGTGGAGGCCCTGGTGCTGTACCTGGTGAACGAGT
ACAGCCCGGTGTTCGTGTCCGAGATCACCTCGGTCACGGTTACGGGCGAG
GATGGCGTCACGACGATGGGCAGCCGTCGGGGACTGTCCCGATCGGGGTC
TGAAAGACTCGCAGTAGAGGCCGGGCGTGAGGGCGAAGACAGCAGTAGCG
GCCGAGCTATCGAGGAGAAGGAGAAGGACGGCCCAGATGACCCCGGCGGG
CGATCCGCGATGCCGAGCTCCCCGCCAAAGAGCCGGAGGAGGCGGCCGTG
GCTCCGCGTGCTGTTCGCGCTGTTCCTGATCGTGGAGGCCCTGGTGCTGT
ACCTGGTGAACGAGTACAGCCCGGTGTTCGTGTCCGAGATCACCTCGGTC
ACGGTTACGGGCGAGGATGGCGTCACGACGGTTGTCGGTGCCAACCCCGA
CTTGTTGTATCCAATCACGCTCGGGGGGGAATCCTGCGCGGTGCCAGAGA
TGGCGGGGTGCGTGACGGAGGATGCCTCGGAGGAGATGTTAGCGACGGTA
TGCTGCTCGGAGCTGCTGGACCCAGATAGCCCGGGACCGGAGGAGGCGAT
TTCTTCGCTCGTGGCGTTCTGCTACGTTGTCGTCATCCCCGGTTGTCGGT
GCCAACCCCGACTTGTTGTATCCAATCACGCTCGGGGGGGAATCCTGCGC
GGTGCCAGAGATGGCGGGGTGCGTGACGGAGGATGCCTCGGAGGAGATGT
TAGCGACGGTATGCTGCTCGGAGCTGCTGGACCCAGATAGCCCGGGACCG
GAGGAGGCGATTTCTTCGCTCGTGGCGTTCTGCTACGTTGTCGTCATCCC
CGGGTTGATTTTGTTGATGAGAGGCTTCCTGCTGGGAAGGTTGTGGACAC
TCAGGCCGATGAGGGATGCGCCGTTTTGCACACGCGGACGGTTGATTTTG
TTGATGAGAGGCTTCCTGCTGGGAAGGTTGTGGACACTCAGGCCGATGAG
GGATGCGCCGTTTTGCACACGCGGACCTCAAAGCGAGGCCGCGTGGGGCA
AGAGACGATGGCATCTGCGGGTGGGGTTCTTCGCTCTAGACGCCTTCCTG
GGGCTGATGGCCGCGGTTGTGACGGCCTCGCTGTTTTCTACGGTCGCAAA
GCTCAAAGCGAGGCCGCGTGGGGCAAGAGACGATGGCATCTGCGGGTGGG
GTTCTTCGCTCTAGACGCCTTCCTGGGGCTGATGGCCGCGGTTGTGACGG
CCTCGCTGTTTTCTACGGTCGCAAAGGTTACTTGCGGCCGGCCAAGACCA
AACTATTTCGCGCTCCGCTTTTACACGGAACACACGGCGAACGGGCTGGT
TACTTGCGGCCGGCCAAGACCAAACTATTTCGCGCTCCGCTTTTACACGG
AACACACGGCGAACGGGCTGGACTATGACCATTGGTCGACCACTAGCTGG
CCGTCGGGGCACGCGGCGACGGCCATGTCGGGACTTGTATTCCTCGCCTA
CGTGCTGTGGCGGGACCTTGGAGCGCTTGTCATGGACTATGACCATTGGT
CGACCACTAGCTGGCCGTCGGGGCACGCGGCGACGGCCATGTCGGGACTT
GTATTCCTCGCCTACGTGCTGTGGCGGGACCTTGGAGCGCTTGTCATGTG
GCGTCGTCGTGCGCACCCGAGACTGTCGCTGGTACTGGCGGTGCTGGGCG
GGTTTGCGTTGGGAGCGTTGCCGATGAGCGCAATCCTAATCGGGATCACT
CGTGGCGTCGTCGTGCGCACCCGAGACTGTCGCTGGTACTGGCGGTGCTG
GGCGGGTTTGCGTTGGGAGCGTTGCCGATGAGCGCAATCCTAATCGGGAT
CACTCGAATTCGAGAGTACTGGCATCGCCCAGACGATGTCCTGGTGGGCT
TCGTCATAGGCCTCGCGGCGGCCCACTGGTCCTTCCAGTTGGTGGTGCTG
ATGCCCTTCCGCCACGAGATCGGGTCGCCCGAGTGGAAGAAGGACCCCAA
GTGGCTGGACGACGAAGACAAGGAGTGGGAGGAGGAGGAGGAGCTGCTGC
GCCTGTGCGGGTGGAATGTGGGCGGCAGCAAGAAGAGGGGGCCTTCCCAG
ATGCGAGCGTCTTCGACGGAGGACACCGAGAAAGCCCCAAATATACAGAA
TTCGAGAGTACTGGCATCGCCCAGACGATGTCCTGGTGGGCTTCGTCATA
GGCCTCGCGGCGGCCCACTGGTCCTTCCAGTTGGTGGTGCTGATGCCCTT
CCGCCACGAGATCGGGTCGCCCGAGTGGAAGAAGGACCCCAAGTGGCTGG
ACGACGAAGACAAGGAGTGGGAGGAGGAGGAGGAGCTGCTGCGCCTGTGC
GGGTGGAATGTGGGCGGCAGCAAGAAGAGGGGGCCTTCCCAGATGCGAGC
GTCTTCGACGGAGGACACCGAGAAAGCCCCAAATATACAGACGGAGCCCC
CGGTTCGCGTTTCCGACCCAGACGAGGGCTTGGGGAAGCTATACTTCTCC
CCCGTCTAGACGGAGCCCCCGGTTCGCGTTTCCGACCCAGACGAGGGCTT
GGGGAAGCTATACTTCTCCCCCGTCTAG
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