mRNA_C-linearis_contig11.1276.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1276.1
Unique NamemRNA_C-linearis_contig11.1276.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2149523..2150270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size748
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1276.1prot_C-linearis_contig11.1276.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2149628..2150098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.6807642-UTR-C-linearis_contig11:2149522..21496271622927428.6807642-UTR-C-linearis_contig11:2149522..2149627Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2149523..2149627 +
1690879694.6126692-UTR-C-linearis_contig11:2149522..21496271690879694.6126692-UTR-C-linearis_contig11:2149522..2149627Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2149523..2149627 +
1622927428.70325-UTR-C-linearis_contig11:2150098..21502701622927428.70325-UTR-C-linearis_contig11:2150098..2150270Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2150099..2150270 +
1690879694.6301212-UTR-C-linearis_contig11:2150098..21502701690879694.6301212-UTR-C-linearis_contig11:2150098..2150270Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2150099..2150270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.6913254-CDS-C-linearis_contig11:2149627..21500981622927428.6913254-CDS-C-linearis_contig11:2149627..2150098Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2149628..2150098 +
1690879694.6214013-CDS-C-linearis_contig11:2149627..21500981690879694.6214013-CDS-C-linearis_contig11:2149627..2150098Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2149628..2150098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1276.1

>prot_C-linearis_contig11.1276.1 ID=prot_C-linearis_contig11.1276.1|Name=mRNA_C-linearis_contig11.1276.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=157bp
MCAHHRRTISIPPHPFSPKWRLPFAACKMMYTIRYKSCPLQDTKCIKLSG
TPPSERTIPCPPELAGGGWRYTAVKATLILMPWTIFQQRGSAMMPGETRP
NRIPKQQNLHKVTDDAADLGTRVSRKSLQTSDSRLHSCGGIGGTAINCGA
GCCAFP*
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mRNA from alignment at C-linearis_contig11:2149523..2150270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1276.1 ID=mRNA_C-linearis_contig11.1276.1|Name=mRNA_C-linearis_contig11.1276.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=748bp|location=Sequence derived from alignment at C-linearis_contig11:2149523..2150270+ (Chordaria linearis ClinC8C monoicous)
CGGTTAACACAGCAGCTGAGCAGTCATTCAGCGGGTGTACCTTGGAGGCC
CAAAGGTTCTTTTGACCCTGTTGCTGCCTGCTACTATTGCTGTGTTACCG
TCGGGATGTGTGCTCACCATCGCCGTACGATATCTATCCCCCCCCATCCT
TTCTCTCCAAAATGGCGCTTGCCTTTCGCCGCGTGTAAAATGATGTACAC
AATACGTTACAAATCGTGCCCGCTGCAGGACACCAAATGCATCAAGCTCA
GCGGCACTCCCCCTTCCGAGCGCACGATACCATGTCCACCTGAGTTAGCT
GGTGGGGGATGGAGGTATACTGCTGTGAAGGCGACGTTGATCCTTATGCC
CTGGACTATCTTTCAACAAAGGGGAAGTGCCATGATGCCAGGCGAAACCC
GCCCAAATCGTATCCCCAAACAGCAAAACTTGCACAAAGTCACCGATGAC
GCCGCGGACCTCGGTACGCGTGTGAGCCGCAAGTCGCTTCAGACTTCAGA
CTCCAGACTCCACTCTTGCGGCGGGATTGGCGGGACTGCCATTAACTGTG
GCGCGGGTTGCTGCGCCTTTCCGTAGAGTGCCATGCCTTTTGTCGGCATC
TGATCGTTACGGTGCTCCAGCCAAGTACACGACGCGTATGTGTGTGTGTG
TTTTTTTTCCCGTCCACATTTGCATTAGTCTATGTCTACAAGGGGCTCCG
CGGCGGGGGCGCGAAGGCGCCCCGCCGCTCCGCTGTAGGCAAAATGCG
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Coding sequence (CDS) from alignment at C-linearis_contig11:2149523..2150270+

>mRNA_C-linearis_contig11.1276.1 ID=mRNA_C-linearis_contig11.1276.1|Name=mRNA_C-linearis_contig11.1276.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at C-linearis_contig11:2149523..2150270+ (Chordaria linearis ClinC8C monoicous)
ATGTGTGCTCACCATCGCCGTACGATATCTATCCCCCCCCATCCTTTCTC
TCCAAAATGGCGCTTGCCTTTCGCCGCGTGTAAAATGATGTACACAATAC
GTTACAAATCGTGCCCGCTGCAGGACACCAAATGCATCAAGCTCAGCGGC
ACTCCCCCTTCCGAGCGCACGATACCATGTCCACCTGAGTTAGCTGGTGG
GGGATGGAGGTATACTGCTGTGAAGGCGACGTTGATCCTTATGCCCTGGA
CTATCTTTCAACAAAGGGGAAGTGCCATGATGCCAGGCGAAACCCGCCCA
AATCGTATCCCCAAACAGCAAAACTTGCACAAAGTCACCGATGACGCCGC
GGACCTCGGTACGCGTGTGAGCCGCAAGTCGCTTCAGACTTCAGACTCCA
GACTCCACTCTTGCGGCGGGATTGGCGGGACTGCCATTAACTGTGGCGCG
GGTTGCTGCGCCTTTCCGTAGATGTGTGCTCACCATCGCCGTACGATATC
TATCCCCCCCCATCCTTTCTCTCCAAAATGGCGCTTGCCTTTCGCCGCGT
GTAAAATGATGTACACAATACGTTACAAATCGTGCCCGCTGCAGGACACC
AAATGCATCAAGCTCAGCGGCACTCCCCCTTCCGAGCGCACGATACCATG
TCCACCTGAGTTAGCTGGTGGGGGATGGAGGTATACTGCTGTGAAGGCGA
CGTTGATCCTTATGCCCTGGACTATCTTTCAACAAAGGGGAAGTGCCATG
ATGCCAGGCGAAACCCGCCCAAATCGTATCCCCAAACAGCAAAACTTGCA
CAAAGTCACCGATGACGCCGCGGACCTCGGTACGCGTGTGAGCCGCAAGT
CGCTTCAGACTTCAGACTCCAGACTCCACTCTTGCGGCGGGATTGGCGGG
ACTGCCATTAACTGTGGCGCGGGTTGCTGCGCCTTTCCGTAG
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