mRNA_C-linearis_contig11.1264.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1264.1
Unique NamemRNA_C-linearis_contig11.1264.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig11.1264.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.700e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 QGNALAKVGLRAVHETGEGRNVDYSSGSVQSDPLALFTFGRGTIGGAQNGARRTVLAGSEEDERL 195
            +GNAL K+G+R  H+ G G NVDYS+   +SDP +L TFG GTIGGAQNGAR+ V   SEED RL
Sbjct:  238 KGNALPKIGVRVAHDIGGGANVDYSTRGFESDPKSLLTFGGGTIGGAQNGARKLVALDSEEDFRL 302
[Close]
BLAST of mRNA_C-linearis_contig11.1264.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.510e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    4 GNALAKVGLRAVHETGEGRNVDYSSGSVQSDPLALFTFGRGTIGGAQNGARRTVLAGSEEDERL 195
            GNAL+K+G+R   +TG G NVDY +   +SDP +L TF RGTIGGAQNGAR+ +   SEED RL
Sbjct:  226 GNALSKIGVRVASDTGRGVNVDYGARGFESDPKSLLTFNRGTIGGAQNGARKLLAIDSEEDVRL 289
[Close]
BLAST of mRNA_C-linearis_contig11.1264.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.340e-15
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    4 GNALAKVGLRAVHETGEGRNVDYSSGSVQSDPLALFTFGRGTIGGAQNG------ARRTVLAGSEEDERL 195
            GNAL K+GL+ VH+TG G  VDY  G    D   L+TFG GTIGG+QNG      +RRTV  GS EDERL
Sbjct:  159 GNALPKMGLKVVHDTGAGAAVDYDGGVQSGDSKVLWTFGGGTIGGSQNGDSGEEGSRRTVAIGSAEDERL 228
[Close]
BLAST of mRNA_C-linearis_contig11.1264.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.650e-13
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   10 ALAKVGLRAVHETGEGRNVDYSSGSVQSDPLALFTFGRGTIGGAQNGARRTVLAGSEEDERLN 198
            A+ ++ +R VH++G G++VD  SG VQ+D   L TF  G IGGAQ GARRTV+ GSEED+RLN
Sbjct:  114 AVPRLVVRVVHDSGAGKDVD-RSGRVQADDKVLITFDGGVIGGAQRGARRTVVLGSEEDQRLN 175
[Close]
BLAST of mRNA_C-linearis_contig11.1264.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.660e-13
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   10 ALAKVGLRAVHETGEGRNVDYSSGSVQSDPLALFTFGRGTIGGAQNGARRTVLAGSEEDERLN 198
            A+ ++ +R VH++G G++VD  SG VQ+D   L TF  G IGGAQ GARRTV+ GSEED+RLN
Sbjct:  114 AVPRLVVRVVHDSGAGKDVD-RSGRVQADDKVLITFDGGVIGGAQRGARRTVVLGSEEDQRLN 175
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L5E5_9PHAE1.700e-1761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLR6_ECTSI1.510e-1659.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU43_9PHAE6.340e-1557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J6_ECTSI3.650e-1357.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWV7_ECTSI3.660e-1357.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1966942..1967139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927448.8946452-CDS-C-linearis_contig11:1966941..19671391622927448.8946452-CDS-C-linearis_contig11:1966941..1967139Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1966942..1967139 +
1690879706.7943757-CDS-C-linearis_contig11:1966941..19671391690879706.7943757-CDS-C-linearis_contig11:1966941..1967139Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1966942..1967139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1264.1prot_C-linearis_contig11.1264.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1966942..1967139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1264.1

>prot_C-linearis_contig11.1264.1 ID=prot_C-linearis_contig11.1264.1|Name=mRNA_C-linearis_contig11.1264.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=66bp
QGNALAKVGLRAVHETGEGRNVDYSSGSVQSDPLALFTFGRGTIGGAQNG
ARRTVLAGSEEDERLN
back to top

mRNA from alignment at C-linearis_contig11:1966942..1967139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1264.1 ID=mRNA_C-linearis_contig11.1264.1|Name=mRNA_C-linearis_contig11.1264.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at C-linearis_contig11:1966942..1967139+ (Chordaria linearis ClinC8C monoicous)
CAAGGGAATGCGTTGGCCAAGGTGGGACTTCGGGCGGTGCACGAAACTGG
AGAAGGGAGGAACGTCGACTACAGTAGTGGTAGTGTGCAGTCGGACCCCT
TGGCTCTGTTCACCTTCGGCAGAGGGACCATCGGTGGGGCGCAAAACGGG
GCGAGGAGAACTGTACTTGCCGGTTCGGAGGAAGACGAGCGTCTGAAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:1966942..1967139+

>mRNA_C-linearis_contig11.1264.1 ID=mRNA_C-linearis_contig11.1264.1|Name=mRNA_C-linearis_contig11.1264.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at C-linearis_contig11:1966942..1967139+ (Chordaria linearis ClinC8C monoicous)
CAAGGGAATGCGTTGGCCAAGGTGGGACTTCGGGCGGTGCACGAAACTGG
AGAAGGGAGGAACGTCGACTACAGTAGTGGTAGTGTGCAGTCGGACCCCT
TGGCTCTGTTCACCTTCGGCAGAGGGACCATCGGTGGGGCGCAAAACGGG
GCGAGGAGAACTGTACTTGCCGGTTCGGAGGAAGACGAGCGTCTGAACCA
AGGGAATGCGTTGGCCAAGGTGGGACTTCGGGCGGTGCACGAAACTGGAG
AAGGGAGGAACGTCGACTACAGTAGTGGTAGTGTGCAGTCGGACCCCTTG
GCTCTGTTCACCTTCGGCAGAGGGACCATCGGTGGGGCGCAAAACGGGGC
GAGGAGAACTGTACTTGCCGGTTCGGAGGAAGACGAGCGTCTGAAC
back to top