mRNA_C-linearis_contig11.1233.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1233.1
Unique NamemRNA_C-linearis_contig11.1233.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 6.020e-41
Identity = 75/115 (65.22%), Postives = 88/115 (76.52%), Query Frame = 3 
Query:  183 LWGGPGDAVARLLGATCELVMNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSP----ALKFVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV 515
            + GGPGDA+A  LGATC++V ND+S RLSPG    PD +LDAS  +F  DFL     QRPDWV+TSP    AL++V +ALS+A KGVALKLPLSFLEPCADRG WL ANPPA+CV
Sbjct:  106 MCGGPGDAIATRLGATCKVVTNDISTRLSPGGLP-PDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219
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BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.790e-38
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 3 
Query:  183 LWGGPGDAVARLLGATCELVMNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSP----ALKFVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV 515
            + GGP DAVAR L  TCE+V NDVS RLS  +++APD  LDAS +TF A+FL DG QQ+P+ VV SP    A+KFV AAL VAK GVALK  LSFLEPC DR +WL ANPP +CV
Sbjct:  142 MCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCV 256
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BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 6.730e-33
Identity = 69/115 (60.00%), Postives = 81/115 (70.43%), Query Frame = 3 
Query:  183 LWGGPGDAVARLLGATCELVMNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSP----ALKFVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV 515
            + GG  DAVA  L  TC+++ NDV  RLSP +      +LDAS+ +F  DFL     Q+PDW+VTSP    AL FV AAL+VAKKGVALKLPLSFLEPCADR  WL ANPPALC+
Sbjct:   94 MCGGTDDAVAIRLRDTCQVLTNDVGPRLSPAT------NLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCM 202
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BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.300e-30
Identity = 66/115 (57.39%), Postives = 81/115 (70.43%), Query Frame = 3 
Query:  183 LWGGPGDAVARLLGATCELVMNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSPALK----FVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV 515
            + GGP DAVA+   +TCE++ NDVS RLS G+      +LDAS  +F  +F +    ++PDWVVTSP  K    FV AAL+VA KGVALKLPLSFLEPCADRG WL  NPPA+C+
Sbjct:  152 MCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGT------NLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCI 260
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BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: A0A6H5K266_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K266_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.240e-30
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 3 
Query:  183 LWGGPGDAVARLLGATCELVMNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSP 383
            + GGP DAVARLLGATCEL+ ND+SGRLSPGSK+APD HLDASATTFCA FLE+ +QQRPDWVV SP
Sbjct:  106 MCGGPCDAVARLLGATCELITNDISGRLSPGSKKAPDMHLDASATTFCAAFLENSIQQRPDWVVKSP 172
[Close]
BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.800e-29
Identity = 62/115 (53.91%), Postives = 77/115 (66.96%), Query Frame = 3 
Query:  183 LWGGPGDAVARLLGATCELVMNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSP----ALKFVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV 515
            + GGP DAVA  L +TCE++ NDVS      S +  D +L+AS   F  DFL     +RP+WVVTSP    AL FV AA+S+A KGVA K+P+ FLEPCADRG WL  NPP++CV
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVS------SGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCV 109
[Close]
BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.970e-28
Identity = 65/126 (51.59%), Postives = 75/126 (59.52%), Query Frame = 3 
Query:  150 CCPHQRESIGFLWGGPGDAVARLLGATCELVMNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSP----ALKFVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV 515
            CC H  E + FL G  G +       TC   ++             PD +LDAS+ +F  DFL    +Q+PDWVVT P    AL FV AAL VAKKGVALKLPLSFLEPCADR  WL ANPPALC+
Sbjct:   28 CCSHLPEQVLFL-GNKGKS-------TCVSALS-------------PDTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCM 132
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BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.370e-26
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 3 
Query:  285 APDAHLDASATTFCADFLEDGVQQRPDWVVTSP----ALKFVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV 515
            +PD +LDAS+ +F  D+L     Q+PDWVV+SP    AL FV AAL+VAK+GVALKLPLSFLEPCADR  WL ANPPALC+
Sbjct:   12 SPDTNLDASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCM 92
[Close]
BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.510e-26
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 3 
Query:  279 KQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSP----ALKFVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV 515
            K +PD +LDAS+T++  D+L     Q+PDWVV SP    AL FV AAL+VAK+GVALKLPLSFLEPCADR  WL  NPP+LC+
Sbjct:    9 KLSPDTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCM 91
[Close]
BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Match: D7G7B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B0_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 6.780e-24
Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 3 
Query:  183 LWGGPGDAVARLLGATCELVMNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSP----ALKFVTAALSVAKKGVALKLPLSFLEPCADRGEWL 488
            + GGP DAVA  L +TCE++ NDVS      S +  D +LDAS   F  +FL     +RP+WVV SP    AL FV AA+S+A KGVA K+P+ FLEPCADRG WL
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVS------SGRPADTNLDASLELFPENFLAAYSGKRPEWVVISPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWL 100
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJU4_ECTSI6.020e-4165.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHQ4_9PHAE3.790e-3863.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE6.730e-3360.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE2.300e-3057.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K266_9PHAE6.240e-3080.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI1.800e-2953.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSV3_9PHAE3.970e-2851.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE2.370e-2665.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAM1_9PHAE6.510e-2662.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7B0_ECTSI6.780e-2452.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1426616..1427362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1233.1prot_C-linearis_contig11.1233.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1426858..1427362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927443.0572813-UTR-C-linearis_contig11:1426615..14268571622927443.0572813-UTR-C-linearis_contig11:1426615..1426857Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1426616..1426857 +
1690879703.1937037-UTR-C-linearis_contig11:1426615..14268571690879703.1937037-UTR-C-linearis_contig11:1426615..1426857Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1426616..1426857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927443.1022165-CDS-C-linearis_contig11:1426857..14268771622927443.1022165-CDS-C-linearis_contig11:1426857..1426877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1426858..1426877 +
1690879703.2017379-CDS-C-linearis_contig11:1426857..14268771690879703.2017379-CDS-C-linearis_contig11:1426857..1426877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1426858..1426877 +
1622927443.1114872-CDS-C-linearis_contig11:1427109..14273621622927443.1114872-CDS-C-linearis_contig11:1427109..1427362Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1427110..1427362 +
1690879703.2096002-CDS-C-linearis_contig11:1427109..14273621690879703.2096002-CDS-C-linearis_contig11:1427109..1427362Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1427110..1427362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1233.1

>prot_C-linearis_contig11.1233.1 ID=prot_C-linearis_contig11.1233.1|Name=mRNA_C-linearis_contig11.1233.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=91bp
MNDVSGRLSPGSKQAPDAHLDASATTFCADFLEDGVQQRPDWVVTSPALK
FVTAALSVAKKGVALKLPLSFLEPCADRGEWLSANPPALCV
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mRNA from alignment at C-linearis_contig11:1426616..1427362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1233.1 ID=mRNA_C-linearis_contig11.1233.1|Name=mRNA_C-linearis_contig11.1233.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at C-linearis_contig11:1426616..1427362+ (Chordaria linearis ClinC8C monoicous)
CTCAGCAAGGAGCGCGTTGCACGCAAACTGAAACGTTTGCCTGCGGCCAG
AGCAAGGGGGACCGGTTCTCCCGAGCCGGTGCGCCAGCTTCGACGCCGCC
ATCTGGACCGCTACTGTACCTCCGATGCGGCGGTTGAGGTGCTGCTTAAT
GCTGTCCCCATCAGCGGGAGAGTATTGGTTTTCTGTGGGGGGGGCCCGGC
GATGCGGTGGCACGGCTACTTGGAGCGACGTGTGAGCTCGTAATGAATGA
CGTCAGCGGCAGGTGATTTATTTGTTGTAGTGGGTAAAGAGTAGTGGCTT
GTGGTTGCGACTGTAGAGAAGGGAGCGTGGAAGTCGTAACGTTACACAGC
ACCGTTGGGTCTGTATGGCACTGATGTTGTCGGCTCCCCTTCTCCCACCC
CCTGCCCACTTTGTACATGCCGATAATGCATCAAGCGCCTTCGTTTACGT
GCCCTTGCCCCCCCCCTTGCACCTCGTTACTCCGGCATTTTCAGGTTGTC
CCCCGGCTCTAAGCAGGCACCGGACGCTCACCTAGATGCAAGCGCGACAA
CATTTTGTGCCGACTTCCTGGAGGACGGCGTTCAACAGCGCCCTGACTGG
GTCGTGACGAGCCCCGCTCTGAAGTTTGTCACAGCGGCGCTGTCGGTAGC
GAAAAAAGGCGTGGCGCTGAAGCTGCCCCTGTCTTTTCTTGAACCTTGCG
CAGACCGAGGAGAATGGCTTTCAGCGAACCCTCCGGCTCTTTGTGTT
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Coding sequence (CDS) from alignment at C-linearis_contig11:1426616..1427362+

>mRNA_C-linearis_contig11.1233.1 ID=mRNA_C-linearis_contig11.1233.1|Name=mRNA_C-linearis_contig11.1233.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at C-linearis_contig11:1426616..1427362+ (Chordaria linearis ClinC8C monoicous)
ATGAATGACGTCAGCGGCAGATGAATGACGTCAGCGGCAGGTTGTCCCCC
GGCTCTAAGCAGGCACCGGACGCTCACCTAGATGCAAGCGCGACAACATT
TTGTGCCGACTTCCTGGAGGACGGCGTTCAACAGCGCCCTGACTGGGTCG
TGACGAGCCCCGCTCTGAAGTTTGTCACAGCGGCGCTGTCGGTAGCGAAA
AAAGGCGTGGCGCTGAAGCTGCCCCTGTCTTTTCTTGAACCTTGCGCAGA
CCGAGGAGAATGGCTTTCAGCGAACCCTCCGGCTCTTTGTGTTGTTGTCC
CCCGGCTCTAAGCAGGCACCGGACGCTCACCTAGATGCAAGCGCGACAAC
ATTTTGTGCCGACTTCCTGGAGGACGGCGTTCAACAGCGCCCTGACTGGG
TCGTGACGAGCCCCGCTCTGAAGTTTGTCACAGCGGCGCTGTCGGTAGCG
AAAAAAGGCGTGGCGCTGAAGCTGCCCCTGTCTTTTCTTGAACCTTGCGC
AGACCGAGGAGAATGGCTTTCAGCGAACCCTCCGGCTCTTTGTGTT
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