mRNA_C-linearis_contig11.1227.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1227.1
Unique NamemRNA_C-linearis_contig11.1227.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1295246..1295801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size556
Cds size462
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.3459883-UTR-C-linearis_contig11:1295245..12953391622927428.3459883-UTR-C-linearis_contig11:1295245..1295339Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1295246..1295339 +
1690879694.501867-UTR-C-linearis_contig11:1295245..12953391690879694.501867-UTR-C-linearis_contig11:1295245..1295339Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1295246..1295339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.3894153-CDS-C-linearis_contig11:1295339..12958011622927428.3894153-CDS-C-linearis_contig11:1295339..1295801Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1295340..1295801 +
1690879694.5153615-CDS-C-linearis_contig11:1295339..12958011690879694.5153615-CDS-C-linearis_contig11:1295339..1295801Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1295340..1295801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1227.1prot_C-linearis_contig11.1227.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1295340..1295801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1227.1

>prot_C-linearis_contig11.1227.1 ID=prot_C-linearis_contig11.1227.1|Name=mRNA_C-linearis_contig11.1227.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=154bp
MRIALSSRVCPPSLAFLPRPMLSLPVHCRPNAIIFCHGLHDVRVVSIMGF
EISPLQQATGCIIEHSLAQQTATRLAVSLCCLPRRHLCQAGIAVADAHPV
GHVPVDGLACRGHGGKVLCGTANLLLAYRRFEMDMCTTWCCFRTPAWCTA
ALQ*
back to top

mRNA from alignment at C-linearis_contig11:1295246..1295801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1227.1 ID=mRNA_C-linearis_contig11.1227.1|Name=mRNA_C-linearis_contig11.1227.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at C-linearis_contig11:1295246..1295801+ (Chordaria linearis ClinC8C monoicous)
GTCAGTCCGAAGCATCGTGCAACCGCCTTGAATCGATGGTTCTGCTTTTC
GCGCTTTGTTTCGTGGTTTCCGCTTGCCTCGCGAGAGAGAGTGGATGCGA
ATTGCTCTCAGCTCGCGCGTGTGTCCGCCCTCTCTTGCCTTTCTCCCGCG
TCCAATGCTTTCTCTGCCGGTGCACTGCCGTCCAAATGCCATCATTTTCT
GCCACGGGTTGCATGATGTACGCGTAGTCTCGATCATGGGCTTTGAAATT
AGCCCCCTACAGCAGGCGACAGGCTGCATAATCGAACACTCTCTTGCCCA
GCAGACAGCCACCCGCTTGGCTGTAAGCTTGTGCTGTTTGCCGAGGCGGC
ACCTCTGTCAAGCAGGGATAGCTGTGGCTGACGCCCACCCTGTTGGTCAC
GTACCGGTCGATGGGCTTGCGTGCCGTGGACATGGGGGCAAAGTTTTGTG
CGGAACTGCCAACCTTCTGTTGGCCTACCGGCGATTTGAAATGGATATGT
GCACAACATGGTGCTGTTTCCGGACCCCAGCGTGGTGTACTGCGGCATTA
CAGTAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:1295246..1295801+

>mRNA_C-linearis_contig11.1227.1 ID=mRNA_C-linearis_contig11.1227.1|Name=mRNA_C-linearis_contig11.1227.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at C-linearis_contig11:1295246..1295801+ (Chordaria linearis ClinC8C monoicous)
ATGCGAATTGCTCTCAGCTCGCGCGTGTGTCCGCCCTCTCTTGCCTTTCT
CCCGCGTCCAATGCTTTCTCTGCCGGTGCACTGCCGTCCAAATGCCATCA
TTTTCTGCCACGGGTTGCATGATGTACGCGTAGTCTCGATCATGGGCTTT
GAAATTAGCCCCCTACAGCAGGCGACAGGCTGCATAATCGAACACTCTCT
TGCCCAGCAGACAGCCACCCGCTTGGCTGTAAGCTTGTGCTGTTTGCCGA
GGCGGCACCTCTGTCAAGCAGGGATAGCTGTGGCTGACGCCCACCCTGTT
GGTCACGTACCGGTCGATGGGCTTGCGTGCCGTGGACATGGGGGCAAAGT
TTTGTGCGGAACTGCCAACCTTCTGTTGGCCTACCGGCGATTTGAAATGG
ATATGTGCACAACATGGTGCTGTTTCCGGACCCCAGCGTGGTGTACTGCG
GCATTACAGTAGATGCGAATTGCTCTCAGCTCGCGCGTGTGTCCGCCCTC
TCTTGCCTTTCTCCCGCGTCCAATGCTTTCTCTGCCGGTGCACTGCCGTC
CAAATGCCATCATTTTCTGCCACGGGTTGCATGATGTACGCGTAGTCTCG
ATCATGGGCTTTGAAATTAGCCCCCTACAGCAGGCGACAGGCTGCATAAT
CGAACACTCTCTTGCCCAGCAGACAGCCACCCGCTTGGCTGTAAGCTTGT
GCTGTTTGCCGAGGCGGCACCTCTGTCAAGCAGGGATAGCTGTGGCTGAC
GCCCACCCTGTTGGTCACGTACCGGTCGATGGGCTTGCGTGCCGTGGACA
TGGGGGCAAAGTTTTGTGCGGAACTGCCAACCTTCTGTTGGCCTACCGGC
GATTTGAAATGGATATGTGCACAACATGGTGCTGTTTCCGGACCCCAGCG
TGGTGTACTGCGGCATTACAGTAG
back to top