mRNA_C-linearis_contig11.1225.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: D8LU36_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU36_ECTSI) HSP 1 Score: 298 bits (764), Expect = 1.060e-99 Identity = 147/212 (69.34%), Postives = 166/212 (78.30%), Query Frame = 3
Query: 63 MALNPYATPFV-KGSGSATSASPVK------SAPTGTPKVYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKHTYCRPGNVLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKALLPEDPPRPEAEPKGEGERSAKRQKKG 677
M LNP+ATPFV KGSG +A + S+ + TPK++CDLDGCLVDFEKGC+AV G+ P +L PK MWGGLAR KGFYE LDWMPDGRELW+GV LQPTILTGLPMG WAEPQKRNWCKRELGE VPVITCMSRDKHT+CRPGN+LIDDR L+AAW RAGGVFIHHT+A+SS EKLKA+LP E E + +AKRQK G
Sbjct: 1 MPLNPHATPFVIKGSGGGAAADAGRKVRGKTSSSSPTPKIFCDLDGCLVDFEKGCQAVM-GETPDKLRPKAMWGGLARAKGFYEHLDWMPDGRELWDGVAHLQPTILTGLPMGNWAEPQKRNWCKRELGEHVPVITCMSRDKHTHCRPGNILIDDRESLKAAWQRAGGVFIHHTAATSSLEKLKAILPA-----EEETASGDQGNAKRQKNG 206
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: A0A7S3XQ39_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ39_HETAK) HSP 1 Score: 195 bits (495), Expect = 4.670e-58 Identity = 86/147 (58.50%), Postives = 106/147 (72.11%), Query Frame = 3
Query: 159 VYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKHTYCRPGNVLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKAL 599
++CDLDG LVDF+ G + + +GK P E+ PK MW LAR + FY L WMPDG+ELW+ ++ +PTILTGLPMG+WAE QKR WC RELG VPV TC+SRDK RPG VL+DDR L+ WV AGGVFIHH S S + ++L L
Sbjct: 99 IFCDLDGVLVDFDSGVQQI-TGKMPSEMHPKTMWPQLARAEDFYNGLSWMPDGKELWDRIQSQRPTILTGLPMGRWAEAQKRAWCARELGAGVPVDTCLSRDKWRRARPGAVLVDDRFSLQEKWVEAGGVFIHHQSTSQTIDQLTDL 244
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: A0A2M8AHI9_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium CG_4_9_14_3_um_filter_33_16 TaxID=1973993 RepID=A0A2M8AHI9_9FLAO) HSP 1 Score: 181 bits (459), Expect = 2.930e-54 Identity = 82/149 (55.03%), Postives = 102/149 (68.46%), Query Frame = 3
Query: 156 KVYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKHTYCRPGNVLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKALL 602
+V+ DLDG L DFEK +F GK PKE+ KVMWG LA FY +LDWMPDGR+LW+GV+ L P ILTG+PMG WA QKR+WC R LG D+ VITC +++K Y +PG++LIDD AW GG+ IHH +A SS KLK +
Sbjct: 2 QVFVDLDGVLCDFEKRVHEIF-GKKPKEIPLKVMWGKLASIDNFYSELDWMPDGRDLWDGVKHLNPIILTGIPMGGWAPHQKRSWCYRNLGCDISVITCFAKEKQNYGKPGDILIDDTKRNIDAWKSIGGIAIHHVTAKSSLAKLKEYI 149
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: A0A660SVB8_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A660SVB8_9SPIR) HSP 1 Score: 181 bits (460), Expect = 4.050e-54 Identity = 88/158 (55.70%), Postives = 106/158 (67.09%), Query Frame = 3
Query: 156 KVYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKHTYC--------RPGN--VLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKAL 599
+++ DLDG LVDFE G R +GK P EL P+ MW +A TKGFY++L WMPDGR+LWE V+G P ILTGLPMGKWAEPQKR WC+RELG ++PVIT MSR K P +LIDDRL ++ W AGG+FI H A+ S E LK L
Sbjct: 10 QLFVDLDGVLVDFETGVRRA-TGKEPSELHPRRMWPAIAGTKGFYDRLGWMPDGRDLWEAVKGYSPVILTGLPMGKWAEPQKRTWCERELGPEIPVITGMSRRKAELALSWLEENGMPDKTPILIDDRLKIKEPWEAAGGIFILHLHAAGSIEALKGL 166
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: H9UJ11_SPIAZ (Uncharacterized protein n=1 Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) TaxID=889378 RepID=H9UJ11_SPIAZ) HSP 1 Score: 181 bits (459), Expect = 4.170e-54 Identity = 86/156 (55.13%), Postives = 100/156 (64.10%), Query Frame = 3
Query: 159 VYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKHTYCRPGN------VLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKALLPE 608
++ DLDG L DF++ +F G P EL P +W LA+T GFY L W PDG +LWE L PTILTGLP G WAEPQKR WC RELG VPVITCMSRDKH +L+DDR L AW AGGVFIHHTSA++S E+L L P+
Sbjct: 6 LFLDLDGVLADFDRAVVELF-GTPPHELHPARLWSRLAKTPGFYASLHWTPDGADLWEFARRLSPTILTGLPRGSWAEPQKREWCARELGSTVPVITCMSRDKHLQAEQARQVGMTAILVDDRQRLAEAWEAAGGVFIHHTSAAASIEQLSGLYPD 160
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: V5WIQ5_9SPIO (Uncharacterized protein n=2 Tax=Salinispira pacifica TaxID=1307761 RepID=V5WIQ5_9SPIO) HSP 1 Score: 178 bits (452), Expect = 3.800e-53 Identity = 84/149 (56.38%), Postives = 105/149 (70.47%), Query Frame = 3
Query: 159 VYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKHTYCRPGN-----VLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKL 590
++ DLDG LVDF++G + V +GK P EL+P+ MW LA++ FY +L WMPDGR+LW+ ++ + P ILTGLPMG WAE QKR+WC RELGEDV VITCMSR+K R VLIDDRL L+ AW GG+FIHHT A S +L
Sbjct: 2 LFVDLDGVLVDFDRGVKEV-TGKLPHELSPREMWPRLAKSGDFYNRLHWMPDGRQLWDELKHMNPVILTGLPMGNWAEAQKRSWCARELGEDVEVITCMSREKAKKARERAGTRIPVLIDDRLRLKEAWEEMGGIFIHHTDAVKSLRQL 149
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: A0A660SQU3_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A660SQU3_9SPIR) HSP 1 Score: 177 bits (449), Expect = 1.850e-52 Identity = 86/158 (54.43%), Postives = 107/158 (67.72%), Query Frame = 3
Query: 156 KVYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKH----TYCRPGN------VLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKAL 599
+++ DLDG LVDFE G R +GK P EL + MW +A TK FY++L WMPDGR+LW+ + QP ILTGLPMGKWAEPQKR+WC+RELG D+PVIT MSR K T+ +LIDDRL ++ W AGG+FI H SA+ S E+LK L
Sbjct: 10 QLFVDLDGVLVDFETGVRRA-TGKEPSELHSRSMWPAIAGTKDFYDRLGWMPDGRDLWQVAKDFQPVILTGLPMGKWAEPQKRSWCERELGPDIPVITGMSRRKAELALTWLEENRMPDKTPILIDDRLKIKEPWEAAGGIFILHLSAAGSIEELKGL 166
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: A0A098QU60_9SPIO (Uncharacterized protein n=1 Tax=Spirochaeta lutea TaxID=1480694 RepID=A0A098QU60_9SPIO) HSP 1 Score: 177 bits (448), Expect = 2.100e-52 Identity = 84/155 (54.19%), Postives = 103/155 (66.45%), Query Frame = 3
Query: 156 KVYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKHTYCRP------GNVLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKALL 602
+++ DLDG L DF+ G +AV +G+ P+ L P VMWG +A+T FY LDWMPDG+ LWE + L P ILTGLP G WAEPQKR WCKR LG D+ VITCMSR+K T R VL+DDR L AW AGG+FIHH +A S + L+ L
Sbjct: 5 QLFLDLDGVLADFDGGVKAV-TGRLPEALPPGVMWGKIAKTPDFYNTLDWMPDGQLLWEHLHALNPIILTGLPRGSWAEPQKRAWCKRMLGPDIEVITCMSREKATIARERVGHDRDMVLVDDRERLRGAWEDAGGIFIHHRNARESLQALQPYL 158
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: E0RU76_SPITD (Uncharacterized protein n=1 Tax=Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) TaxID=665571 RepID=E0RU76_SPITD) HSP 1 Score: 176 bits (445), Expect = 6.350e-52 Identity = 84/157 (53.50%), Postives = 105/157 (66.88%), Query Frame = 3
Query: 156 KVYCDLDGCLVDFEKGCRAVFSGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGEDVPVITCMSRDKHTYC----RPGNV--LIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKALLPE 608
+++ DLDG LVDFEKG +GK E +P MW LART FY +LDW+PDGR+LWE + +PTILTGLP+G+WA PQKR WC+ LG +VPV+TC+SR K RPG V LIDDR L +W GG+FIHHTSA ++ L +LL E
Sbjct: 4 RIFVDLDGVLVDFEKGVLEA-TGKRVDEQSPSEMWAVLARTPEFYARLDWLPDGRKLWEFLRPFKPTILTGLPLGRWAAPQKRTWCRIHLGPEVPVLTCLSRHKAATALEVLRPGEVPLLIDDRESLRPSWEEIGGIFIHHTSADATISSLTSLLRE 159
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Match: A0A835Z4N0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N0_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.310e-50 Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 3
Query: 219 SGKNPKELAPKVMWGGLARTKGFYEKLDWMPDGRELWEGVEGLQPTILTGLPMGKWAEPQKRNWCKRELGE--DVPVITCMSRDKHTYCR-PGNVLIDDRLPLEAAWVRAGGVFIHHTSASSSWEKLKALLP 605
+G+ P ++ P+ MW LAR FY +L WM DG++LWE + G +P ILTGLP+G+WA PQKR WC+RELG+ DVPVITCMSRDKHTYCR PG++LIDDR+ + W AGGVF+ HTSA S L+ LLP
Sbjct: 4 TGRLPDQMQPRYMWPLLARAPDFYTRLPWMKDGKQLWEFIRGYKPAILTGLPLGQWAAPQKRRWCQRELGKPSDVPVITCMSRDKHTYCRVPGSILIDDRITAKEPWEAAGGVFVFHTSAQQSIADLQKLLP 135 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1225.1 >prot_C-linearis_contig11.1225.1 ID=prot_C-linearis_contig11.1225.1|Name=mRNA_C-linearis_contig11.1225.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=220bp MYRWARAISFLRVTMALNPYATPFVKGSGSATSASPVKSAPTGTPKVYCDback to top mRNA from alignment at C-linearis_contig11:1286613..1288745+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1225.1 ID=mRNA_C-linearis_contig11.1225.1|Name=mRNA_C-linearis_contig11.1225.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2133bp|location=Sequence derived from alignment at C-linearis_contig11:1286613..1288745+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:1286613..1288745+ >mRNA_C-linearis_contig11.1225.1 ID=mRNA_C-linearis_contig11.1225.1|Name=mRNA_C-linearis_contig11.1225.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at C-linearis_contig11:1286613..1288745+ (Chordaria linearis ClinC8C monoicous)back to top |