mRNA_C-linearis_contig11.1222.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1222.1
Unique NamemRNA_C-linearis_contig11.1222.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1178037..1178569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1222.1prot_C-linearis_contig11.1222.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1178112..1178513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.2811232-UTR-C-linearis_contig11:1178036..11781111622927428.2811232-UTR-C-linearis_contig11:1178036..1178111Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1178037..1178111 +
1690879694.4720056-UTR-C-linearis_contig11:1178036..11781111690879694.4720056-UTR-C-linearis_contig11:1178036..1178111Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1178037..1178111 +
1622927428.3102648-UTR-C-linearis_contig11:1178513..11785691622927428.3102648-UTR-C-linearis_contig11:1178513..1178569Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1178514..1178569 +
1690879694.4906843-UTR-C-linearis_contig11:1178513..11785691690879694.4906843-UTR-C-linearis_contig11:1178513..1178569Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1178514..1178569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.2954695-CDS-C-linearis_contig11:1178111..11785131622927428.2954695-CDS-C-linearis_contig11:1178111..1178513Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1178112..1178513 +
1690879694.4807858-CDS-C-linearis_contig11:1178111..11785131690879694.4807858-CDS-C-linearis_contig11:1178111..1178513Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1178112..1178513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1222.1

>prot_C-linearis_contig11.1222.1 ID=prot_C-linearis_contig11.1222.1|Name=mRNA_C-linearis_contig11.1222.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MIRDETAFGGEAGGTSSCGRAETTPRGRYAMFPAIVALECACGATQSKVN
PTQALDKARQQGVMTCCGLHTAVETFRKAGEKLLLSLLMTVVFTNGPTHP
AMIDSAWKMKLLVRGRHVGSTTRPEHAQAHKRK*
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mRNA from alignment at C-linearis_contig11:1178037..1178569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1222.1 ID=mRNA_C-linearis_contig11.1222.1|Name=mRNA_C-linearis_contig11.1222.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=533bp|location=Sequence derived from alignment at C-linearis_contig11:1178037..1178569+ (Chordaria linearis ClinC8C monoicous)
CATCAACGTCCCGATACATAGCTCCCACGTCATGTTCCAGGTGGGATTGG
AATTTATTTTGTGCAGTTAGAAGGGATGATTAGAGATGAAACGGCCTTTG
GAGGAGAAGCAGGTGGCACCAGCAGCTGCGGACGGGCAGAGACAACCCCG
CGCGGGAGATATGCTATGTTTCCGGCGATCGTAGCGTTGGAATGCGCTTG
TGGGGCGACACAATCCAAAGTAAATCCTACACAAGCGCTCGACAAAGCCC
GTCAGCAGGGCGTCATGACTTGCTGCGGGCTGCACACTGCCGTGGAAACG
TTTCGCAAGGCGGGGGAAAAGTTGCTGTTGTCGCTACTGATGACGGTGGT
GTTCACCAACGGCCCTACCCACCCCGCAATGATCGATTCTGCCTGGAAGA
TGAAACTCCTTGTTCGGGGAAGACACGTGGGCTCTACCACACGACCAGAG
CACGCACAAGCACACAAACGAAAATGATTATGTAGACTAGGTGCAACAAT
ATCCCAGCTTAACATTCAACCCGCACCTTGAGC
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Coding sequence (CDS) from alignment at C-linearis_contig11:1178037..1178569+

>mRNA_C-linearis_contig11.1222.1 ID=mRNA_C-linearis_contig11.1222.1|Name=mRNA_C-linearis_contig11.1222.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig11:1178037..1178569+ (Chordaria linearis ClinC8C monoicous)
ATGATTAGAGATGAAACGGCCTTTGGAGGAGAAGCAGGTGGCACCAGCAG
CTGCGGACGGGCAGAGACAACCCCGCGCGGGAGATATGCTATGTTTCCGG
CGATCGTAGCGTTGGAATGCGCTTGTGGGGCGACACAATCCAAAGTAAAT
CCTACACAAGCGCTCGACAAAGCCCGTCAGCAGGGCGTCATGACTTGCTG
CGGGCTGCACACTGCCGTGGAAACGTTTCGCAAGGCGGGGGAAAAGTTGC
TGTTGTCGCTACTGATGACGGTGGTGTTCACCAACGGCCCTACCCACCCC
GCAATGATCGATTCTGCCTGGAAGATGAAACTCCTTGTTCGGGGAAGACA
CGTGGGCTCTACCACACGACCAGAGCACGCACAAGCACACAAACGAAAAT
GAATGATTAGAGATGAAACGGCCTTTGGAGGAGAAGCAGGTGGCACCAGC
AGCTGCGGACGGGCAGAGACAACCCCGCGCGGGAGATATGCTATGTTTCC
GGCGATCGTAGCGTTGGAATGCGCTTGTGGGGCGACACAATCCAAAGTAA
ATCCTACACAAGCGCTCGACAAAGCCCGTCAGCAGGGCGTCATGACTTGC
TGCGGGCTGCACACTGCCGTGGAAACGTTTCGCAAGGCGGGGGAAAAGTT
GCTGTTGTCGCTACTGATGACGGTGGTGTTCACCAACGGCCCTACCCACC
CCGCAATGATCGATTCTGCCTGGAAGATGAAACTCCTTGTTCGGGGAAGA
CACGTGGGCTCTACCACACGACCAGAGCACGCACAAGCACACAAACGAAA
ATGA
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