mRNA_C-linearis_contig11.1218.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1218.1
Unique NamemRNA_C-linearis_contig11.1218.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1108978..1115097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size912
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1218.1prot_C-linearis_contig11.1218.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1109231..1115097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.5498185-UTR-C-linearis_contig11:1108977..11092301622927425.5498185-UTR-C-linearis_contig11:1108977..1109230Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1108978..1109230 +
1690879693.2764573-UTR-C-linearis_contig11:1108977..11092301690879693.2764573-UTR-C-linearis_contig11:1108977..1109230Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1108978..1109230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.5606782-CDS-C-linearis_contig11:1109230..11094351622927425.5606782-CDS-C-linearis_contig11:1109230..1109435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1109231..1109435 +
1690879693.284999-CDS-C-linearis_contig11:1109230..11094351690879693.284999-CDS-C-linearis_contig11:1109230..1109435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1109231..1109435 +
1622927425.5701547-CDS-C-linearis_contig11:1113098..11132031622927425.5701547-CDS-C-linearis_contig11:1113098..1113203Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1113099..1113203 +
1690879693.292964-CDS-C-linearis_contig11:1113098..11132031690879693.292964-CDS-C-linearis_contig11:1113098..1113203Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1113099..1113203 +
1622927425.5788503-CDS-C-linearis_contig11:1113637..11137001622927425.5788503-CDS-C-linearis_contig11:1113637..1113700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1113638..1113700 +
1690879693.3013837-CDS-C-linearis_contig11:1113637..11137001690879693.3013837-CDS-C-linearis_contig11:1113637..1113700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1113638..1113700 +
1622927425.588436-CDS-C-linearis_contig11:1114240..11143391622927425.588436-CDS-C-linearis_contig11:1114240..1114339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1114241..1114339 +
1690879693.312145-CDS-C-linearis_contig11:1114240..11143391690879693.312145-CDS-C-linearis_contig11:1114240..1114339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1114241..1114339 +
1622927425.5996737-CDS-C-linearis_contig11:1114912..11150971622927425.5996737-CDS-C-linearis_contig11:1114912..1115097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1114913..1115097 +
1690879693.322707-CDS-C-linearis_contig11:1114912..11150971690879693.322707-CDS-C-linearis_contig11:1114912..1115097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1114913..1115097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1218.1

>prot_C-linearis_contig11.1218.1 ID=prot_C-linearis_contig11.1218.1|Name=mRNA_C-linearis_contig11.1218.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=219bp
MKNSANKGVRTCISRWLLFRAPRLVCILAVSARVAALEQGVPDGGTDGVH
QLEASSSAFSILSGQLKLGVAALQQGVHDRITGGLHQLATSSLSTLTLGK
LMLGESTGPESLEAVVGETRRLQEVPEPAATSDLLSRVFSVASFLATRKA
VGNTGGYADPPTPAPTSPVVAQTCGSYVNDVGSTLCPGGFSPVGSGVSCG
IETYCNQAACCEEGTWGKP
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mRNA from alignment at C-linearis_contig11:1108978..1115097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1218.1 ID=mRNA_C-linearis_contig11.1218.1|Name=mRNA_C-linearis_contig11.1218.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6120bp|location=Sequence derived from alignment at C-linearis_contig11:1108978..1115097+ (Chordaria linearis ClinC8C monoicous)
CGGGAGAGGCGCCTGCGCGAAACCATCATCATCTCCTCACAGAGGGCAAC
GAAACAACATACGCAGTTATGGAGTTGGCTAAGTTCGTTGTCGTCATGTG
CCCGACACCCAGGATGTGGGTGACACTCGCGTTCTGTGTTCTTGGGTCAT
TCCCTCGACCCGCACACCGCTCGCCATTGGCCGCCCGCCCCCGTTCACAT
TCCCTTCACATTGCCCTTCGCATCGCGGCCGTAAGCGGTTGCCTTGACTC
AGCATGAAGAACTCTGCTAATAAAGGGGTGCGTACGTGCATTAGCCGTTG
GCTCCTCTTCCGTGCGCCTCGATTGGTGTGCATTCTCGCTGTTTCTGCAC
GCGTTGCTGCTCTGGAACAAGGCGTTCCAGATGGCGGTACTGACGGCGTC
CACCAGCTTGAAGCGTCCTCAAGCGCTTTCTCTATTCTGTCGGGTCAGCT
GAAGTTAGGTGAGGGAGACTCAGATTTCGAGTGTTGTTTTTTCAGCACGC
GGTGAAGGTTGAAGCGCGGCAGCGTGTTGGCGTTATCACCGATACACAGC
AGCAGTGCCCGGCAGCAGACAGACGTCGTGTTTTTGCTCCAGACGGCAAC
ATCCCGGGCAAGACCTCATTTTCTGATGGTTGAAAATTGAAAACACAACA
GCAGATAGCGCTGATTGGACCTTTTCCCCTCTGCTTTCGTGTCCTTTGCT
GTCAAAGAAAGGATGGATCAGGTCCGTGTGTTCCAGGCCGTTCATAATGC
GCACGATCCGCTTTGATGTTCTTTGTGTCGCGCCGTTTCATGCTCTTTCT
CCTTTGCCCCTTTCCTCTTTGGCTTTGCTCGACAAATACAAGTATACGTA
GACCCCCTCTGTGTGTGTGTTCCCCGCTGTTTTGTGGGTATCCGTGTTTA
AATACATCGTGTCTATTCTCTCGAACTCGGATTTGATATCACTATAGGCG
CCATCCGCGGTTGACCGTCCCGGGCTGTGTCACACTGAAGAAAAAACTAC
CAGTCAAAAATCGATTTTTTCGCAGGGATGGGGGAAACCGGGTCCCGGTA
ATTACCGGTAACATAGTGGCGGGTAGGTAACATGGTTTTTCCCGGGTTAT
TTGCGGTTATTTTTGCGGTGCCCCCGCATACCCCGCCTGTCACCACCAAC
GGCCCCCTGCAAAATAGCGGTGCAGCTGTGGGCGGGGTACATACATACAG
ATACGAAACATAATATAAAAAACAAAAACATTCGAACAGTCTTCTTGTAC
AGTTTATAGTTTATAGTTTACTCCGTATATCATAGCAGCAGCACTCGACA
ACTATCCTGCCATATTTCGTCGAGGAACGCGAAGAGCAAAGGACAAAGCT
AGACCCAGAACCCAGAAcCCCCAGAGATGAGGTACAGAACCCCCGGGGGG
TGGGGTGGTGCAGCTACACACGGAACCCCCGGGGATGGGGCCCTTTCGTC
CCCTTGCGGTAGCGGTAATTACCGGTAGGTAACATCAATTCCTGATTTGA
GGTAATAACCGGTTGTTGTTGTTGTTGTTAACTTCACATAAAACCGGATG
TCAGTTGTAAATGCCAAAATCTAGCAAATGCTCCAGCCCGTGGTCACGAA
AGTACTAGAGCCATCAGAAGATCTAAAGGAACGCACATCTAGCAGCGAAA
AAGGTACACAAGCCCGAAGAGGTACATCTAATCCCTGCACACCTATGCGT
GTCCACAACTGACCTACACGTCCGCCCCACCGTTCGACTACAGCAGCATC
ACCCCCTCCCTGTTTCACTCTCTACCAAAAAAAACGTTTTGCCGACTACA
GCGATTTGCTGTCTGGAGTGCTGTCTGTACAAACACAATGGTAGGCACGT
GGAACAAGAAGCTGGCGGAGCACGGCTGCCGTCTGAAGTGCTGTCAGAAT
GTGTCCGCGGACATACAGTGAAAGAGAACAAACAACCAAAGCCATCTTGC
ACTTGACAATCACCCACGAATCGATCCCGATCGTCTCGGTTGGGTGCAGC
AGTGTAACACTGACACTGACTAAGAAATCGTTCCACACTAAAGGGTCTTC
CACGATGCAGGTTTTACCCAAAAAGGCACCTGGGGTATCACGCCATCTCT
GACGCGTCTCTCTACAAAACCAGTGCAGACGTCACACACACACACACCCA
GCACCGATACAGGGGAAGAAAACGCAAAAATTGACAGTCACAAAATGTTT
GTCCGTCGCCATGGGCCGATGTCTCCGGTGACGCTGAGCCGATGTCGCCG
GTGACGCTGTAGTAGCATGACCACACTCGACCCGCTCCGTCCGTACATGC
TCTCGTTGTCGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGTAC
TCAAGGTTCTTGGTCTTGAAACAAAAATTCTCGCGCCAAAGGGGTCAACC
ACCCCAATCAGCTCGTCGCCACCAGCTCCCTCCTCCTTTGGTGGCGAAGC
CTGGTAACTCAGACAATACAGCTCCCTCTAGCAAACCTAGGGCCGTGTAC
ATAGTGTCCTTTCACCCCTGATGGTGTCTGCCTCCGCGCACAAAAGTGAG
ATGGGCATTGCTGCCTACACCGACGGCCATAAAGGCCCGCGCACCTCTGG
ACTTTTGTGCCTGACCCATCAGTGCCGACCCAACTCTACCACTGCGCACG
CCTCACGGCGGATGCGCGGCAGCAAGAAGGTATTGGGCTCCTTGAGGGTG
AGTCTAGCCTTGCTCGCTAGAAAGACCCCCCCCCTCGCTGTAGGCCATGC
CTAGGCCAAAGCCTTGCCAAGGCAGCGAACCGGTAGGTAACATGGAAATC
TGCGGTTTCCCCCATCCCTGCTTTTTCGTGGTTCGCTCTAAAACACTCAA
AACCAAAAGTTTTAAAAGCTGACCCCCCCCAAAAAAGGTCCCCTTCCGCT
CGATTTTTTTGGCCGCCTTCCCGAGCTTTTTGGTTTTGGGTCACCTCGGC
AATCGACTCCGCTTGGACGATTTAGGGGGGGTAGAGCTACTGAGAAAGTT
GCTCACACCTACTATACTGGCTGTGACAGCGGTGCTATACTCAATTGTAT
ACTTCGAAGTATTCAATGAGTGCTGAGGGAGGAAAAACCCAACATTGTTG
CCCATTTCGGGAGGTGGGCTGGTTTTTAAGCGACGTGCTTGTTGCCTTGA
GGTAGGAGAGAGAGGTGGGCTTCAACGTCCGTTTGAGGTCAAACTCTGGG
GCGTGGGTACCCGAGATGAAGAGTAAAATTCTTGAAATATTTTGATTTTC
TCGGTGCGGCAATGCTGTTCAGCCTTTTACGAAGTATCTCAGTAACGAAA
TGCGAAACAAAAAATCCGACAACGGATTCGAAATCCCCACCCCAAAATTA
CCCTGACCTGAAAGTCTCAGACCGATCTGACCACTTTTCAAAACCGGGCA
CGTTTCAGAATCATCCCCGGGGTTTTGGATGTTTCGAATTTCCTTGCTGG
AAAAGGGAATATGATTTGAAACCCGGTGAAAAACAGTGCAATAAAAAGAA
AAAAAAGAGAATTCGCCATTAGCGTACCCGGGGTAGTATGTGATATTTTT
TTCAAACCTTACCCGGGGATGGTTCGTTCCCACCCACCCCCCTCTAAAAT
TCCGGAACTGTCAACCGCGGATGGCGCCTATACTTTGATTGTTTTGCTGC
TCTCCCGTACATTGGAAGGGGGTGCCACCACGTGTATCCTCACCAACCGG
ATGGTGGCACTGCCTCTAAACCACATCGTCATCTTGAACTCATCGAATCA
CACTCCATGCTCTCTTCGGTCCCCGGATTCTGAATCACGGAATGTGGCAT
CGTAGCGAGACCACCGTCTCGTCGAGCAGGGAGCAACAACAATACTTTGT
ATATTCGTGTACATCATTTACGTGCGGAACACAAATGTGGCTGTCCAAGT
TCGTTGTCGTCATGTACCTGACACCCAAGACTCATTTGTCTGACATCCAC
TTTCTTGGTTTTTGGCGCTCCGCGCGAGCTCATCCCCGCTGCCAAAAGAG
CTTCAGAGGTTGTCTTGTTTCGCCATGAGAAACAATGGTCATGACCGGGT
GCCTGCGCGCATGAACCCTTGGCTCCTCGTTTGTGCGCCACGATTGGTGT
GCATTCTCGCCGTTTCTACAGGCGTTGCTGCTCTGCAACAAGGTGTTCAT
GATCGCATTACTGGCGGCCTCCACCAGCTTGCAACGTCTTCTTTAAGCAC
TCTCACCCTCGGGAAGCTGATGCTAGGTACGGGAGGCTACCGTGTCATGT
CTTTTTCAGCACGTGCTGGAGGTTGAAGCGCGACGTCGCCGTGTCTATGT
GATTTCACCGGCACATCAGCCTAGACAGTTGGCCGTGTTTATCGCTCGAA
ATATGACACGCAAATAGCATGTGTAGTGGCCGATGGAACCGTTTTTCTCT
TCAGTTTCATGCCGTTCTCTGCCCTACGTCTGCATGTGTGTGCACTGTTC
AGAACGCGCAACCTCTGTCGCGCCATTATTTGCAGTTCGCCTTCGCTCCT
TCCATCTGTCTCGTTGCTCAATAAATACCCTCAGTGTGCATTTCCCTTCG
TGGTGTGCTTCGAAGTACCACGTGTTTAATGCGAAACTGACACTGCTCTC
TTGAATGTATTTTATTTTCTTCGTCGCGCTTTGAATTGCCTTTCTCCCGC
AACCTTGAAGGAGAGTCTACAGGGCCAGAGAGTTTGGAAGCGGTCGTGGG
CGAGACCCGGCGGCTGCAGGAAGGTACCCCAGCGCCCCTTGCTCCAGCGC
CCCCCCCCCAATGGTGCACTTGGCAAAATACCATTGTTGTGCTTTCTTAG
AGGCTGCGAGGATTTCATGGTTGCCTGGTCGACAGCATAGAATCTTGGCC
TCTTCTGCTGTTCCTTTTTCGGCGATGCTTTAAAAGAGTTAGACATCGAT
TCCCCAGGGAGAGCAAAGCGTATTACATAGTTCTTGGGCAGGGACGTGAT
GATTGTTGCTCTGACACATACCGTGGTAAGCTCCGCGGTATCGAGTGTTG
GGTGTTCGGAGGGTCGCCCACCCTCGCCTCGGGTAAGCGTTTGCATTGCT
CCGAAGGAGACGAAAGGGCTCCATCGTCGCAACCCGCTACCGCTAAGAAT
GTGTAGGCAAAGGCGTATACTGCAAACCGGCATGTTTTTTCAAACCTAGC
TCCTTCTCGATCATTGCCGTTTTTCCTACTTGGGGTGCGACGTTTCCCAC
GGCCAAAGCCTCATCGACGCCGAAATTCCCACCGCCTCCCACTTTGTGCG
CTTCACCCGGCAGTGCCGGAGCCAGCTGCGACTTCTGATCTCCTCAGCAG
AGTCTTTAGCGTTGCGTCATTTCTGGCAACACGCAAAGCGGTGGGGAACA
CCGGTGGCTACGGTGAGGCGATACTGTAGACCAGTCGTAGGAGCTCCCGT
TCCCTGAAGATGGTATGGTTGTCATCTTTCCTTAACTTTTTTTGTCTATG
TTGGGCGGTGGATTCGGCGAAGACTGGTCGCGTCATGAGTTCCCCGACTT
TCTTCGCCCATGGAAACAGGGCTTCACTTCCATGGTCGCTGCATAGATGT
TGTCACGACAACACGGGCGTTTTGCACGTAGATGGAAGTGGCTGGGCCAT
GTCCGAGTTTGTCTGTGGGTGCGAAGTTCTAACGATATTGCTGTACACCT
GTTAATTGGAGGGCATATTTCTGTGCCAATCTTGGTACGATTCGCATGGG
CGACTTCACCTGGGGTGGGCAGCAGTGCAGCCTCTGTAGATCACGGCCGG
GTCGTAGGGTTTAAAGCTGGCTCAATGCAGGGACTGCACCCGAAGATAAA
AGCTTTAACCATCCCGCCTGCCCTTTCTCGTGGTACTCCCCAAGTATTTC
GCGCGAAGTCAAGACGTGGCTGGGTTGCACTTGACGCCCACTTCGTGACT
CTTTCGTATTCTGCATCAATCCGATTTCCTTTTAGCTGACCCGCCGACCC
CGGCACCGACATCACCTGTGGTGGCACAGACTTGCGGTTCCTACGTGAAC
GATGTCGGCAGCACCCTGTGCCCGGGGGGGTTCTCTCCCGTAGGAAGCGG
CGTCTCGTGTGGAATCGAGACTTATTGCAACCAAGCCGCATGCTGCGAAG
AAGGTACGTGGGGCAAGCCG
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Coding sequence (CDS) from alignment at C-linearis_contig11:1108978..1115097+

>mRNA_C-linearis_contig11.1218.1 ID=mRNA_C-linearis_contig11.1218.1|Name=mRNA_C-linearis_contig11.1218.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at C-linearis_contig11:1108978..1115097+ (Chordaria linearis ClinC8C monoicous)
ATGAAGAACTCTGCTAATAAAGGGGTGCGTACGTGCATTAGCCGTTGGCT
CCTCTTCCGTGCGCCTCGATTGGTGTGCATTCTCGCTGTTTCTGCACGCG
TTGCTGCTCTGGAACAAGGCGTTCCAGATGGCGGTACTGACGGCGTCCAC
CAGCTTGAAGCGTCCTCAAGCGCTTTCTCTATTCTGTCGGGTCAGCTGAA
GTTAGATGAAGAACTCTGCTAATAAAGGGGTGCGTACGTGCATTAGCCGT
TGGCTCCTCTTCCGTGCGCCTCGATTGGTGTGCATTCTCGCTGTTTCTGC
ACGCGTTGCTGCTCTGGAACAAGGCGTTCCAGATGGCGGTACTGACGGCG
TCCACCAGCTTGAAGCGTCCTCAAGCGCTTTCTCTATTCTGTCGGGTCAG
CTGAAGTTAGGCGTTGCTGCTCTGCAACAAGGTGTTCATGATCGCATTAC
TGGCGGCCTCCACCAGCTTGCAACGTCTTCTTTAAGCACTCTCACCCTCG
GGAAGCTGATGCTAGGCGTTGCTGCTCTGCAACAAGGTGTTCATGATCGC
ATTACTGGCGGCCTCCACCAGCTTGCAACGTCTTCTTTAAGCACTCTCAC
CCTCGGGAAGCTGATGCTAGGAGAGTCTACAGGGCCAGAGAGTTTGGAAG
CGGTCGTGGGCGAGACCCGGCGGCTGCAGGAAGGAGAGTCTACAGGGCCA
GAGAGTTTGGAAGCGGTCGTGGGCGAGACCCGGCGGCTGCAGGAAGTGCC
GGAGCCAGCTGCGACTTCTGATCTCCTCAGCAGAGTCTTTAGCGTTGCGT
CATTTCTGGCAACACGCAAAGCGGTGGGGAACACCGGTGGCTACGTGCCG
GAGCCAGCTGCGACTTCTGATCTCCTCAGCAGAGTCTTTAGCGTTGCGTC
ATTTCTGGCAACACGCAAAGCGGTGGGGAACACCGGTGGCTACGCTGACC
CGCCGACCCCGGCACCGACATCACCTGTGGTGGCACAGACTTGCGGTTCC
TACGTGAACGATGTCGGCAGCACCCTGTGCCCGGGGGGGTTCTCTCCCGT
AGGAAGCGGCGTCTCGTGTGGAATCGAGACTTATTGCAACCAAGCCGCAT
GCTGCGAAGAAGGTACGTGGGGCAAGCCGCTGACCCGCCGACCCCGGCAC
CGACATCACCTGTGGTGGCACAGACTTGCGGTTCCTACGTGAACGATGTC
GGCAGCACCCTGTGCCCGGGGGGGTTCTCTCCCGTAGGAAGCGGCGTCTC
GTGTGGAATCGAGACTTATTGCAACCAAGCCGCATGCTGCGAAGAAGGTA
CGTGGGGCAAGCCG
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