mRNA_C-linearis_contig11.1215.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: D8LGH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGH3_ECTSI) HSP 1 Score: 317 bits (811), Expect = 1.260e-98 Identity = 185/347 (53.31%), Postives = 225/347 (64.84%), Query Frame = 1
Query: 241 SEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKA-----LAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPG-DSSAGSPQP------NGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAFEILNGDQKKRSGGSCSKGDQDPEGGTGSSLA-VEAAQGSRCDTTAVGGVDLCVDDARRARLYDVHLLNL 1242
SEEISGQRLWEGSLLLCAYLVE C N S +G+ + G KLD GKSVLELGAGTG+V MLA +LGA +++TDGDDKCV MAQKNI++N++ ++A V LRWG+ ESTT FC +FSEW++R G+ +GVA A AA A + G A+ G + G A ++ G D + G P P + SPL+SFDFILAGDVLYK LL PFL TVRDMLA+GGRMLLCH+PRAGVTYDIVE A +AGFAFEILNGD K+ S G + G + A E A G CD VGG++LCVDDARRARLY++H ++L
Sbjct: 4 SEEISGQRLWEGSLLLCAYLVEVCRNEDSNSSAGDCCR--GMGKPKLDLQGKSVLELGAGTGIVGMLAAKLGAQTLILTDGDDKCVAMAQKNIQDNDVPFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGGKNGVASAAGPTKSLAAGAQDKASVPGDVAVCAHGHSPNASSGNGHLNEDPASTSCEGQDRNVGPPPPPRDSLPSSPSPLKSFDFILAGDVLYKHSLLEPFLRTVRDMLAAGGRMLLCHIPRAGVTYDIVERAFAQAGFAFEILNGDNKEEGSKGHSSGGEGGGKDVGRADAPTEGAAGGHCDAPDVGGIELCVDDARRARLYELHSVDL 348
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A835YP02_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP02_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.560e-24 Identity = 125/412 (30.34%), Postives = 174/412 (42.23%), Query Frame = 1
Query: 97 EYDLDYDVQEVRLLDHV------FKVTTVANEALPLEMLMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVET-------------GVDTAAKALAGGTALPPSGTRRSEVLEAGQTPA-----------VVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLG--PFLGTVRDMLASGGR-MLLCHVPRAGVTYDIVETALVEAGFAFEILNGDQKKRSGGSCSKGDQDPEGGTGSSLAVEAAQGSRCDTTAVGGVDLCVDDARRARLYDVHL 1233
E DL+Y+ Q V + KVT++ANEALPLEML+ L+ R+ EISGQRLWEGSLLLC +++ H ++ GK VLELGAG G+V + +LGA+ V +TDGD KC+ + +NI N ++A A AVL+WG+ + ++ A + + + VA + T G+ AA GG +P + R E+G + + VA A D A + + LE+ A P G R S R +LLCH+PRAGV + V AL E + P GG SLAV A G V G +C DD RA++Y + L
Sbjct: 5 ESDLEYEEQTVTVGSEASGRQMTLKVTSLANEALPLEMLLALEARK---------HEISGQRLWEGSLLLCNHVIAHFAH---------------------AIVGKRVLELGAGCGIVGLTCAKLGAAEVYITDGDAKCLPLIGQNITANNLSA-VAKAAVLKWGNAAALAALSPLPFDFVV---AGDVLYKKELVAPLLSTVRAALRWPPCSQLGLGLAAAGAPGGRQVPSASDSRVASSESGVSTSGXXXXXXXXXXXVATGVAGADV-ATLRAADKQDSLEAAGASAAXXXXXXXXXXXXXPAAGATRQRHGSSDRGLLLCHIPRAGVEHCQVAAALREL-----------------------RAPPGGGARSLAVSAGDGG-----GVAGTAVCDDDVARAQVYALLL 353
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A1V9YS28_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YS28_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.270e-19 Identity = 82/271 (30.26%), Postives = 107/271 (39.48%), Query Frame = 1
Query: 235 SNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVV-MAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAFEI 1044
+ S EISGQR+W GS LL YL +K GK LELGAGTG+VS++A GA+ +V TDGD + V + N++ N A L WGD S T F + F G+AL FD +LAGDVLYK L+ L +V+ L S G LLCH+PRA V++D++++AL GFAF I
Sbjct: 53 ATSSEISGQRIWPGSYLLAEYL----------------------HANKDLVAGKRTLELGAGTGLVSLVARLDGAASLVATDGDLEVVNDILTWNVQTNAPDATNLHTTSLWWGDEASNTAFAERF------------------------------------GSAL--------------------------------------------FDRVLAGDVLYKGELVPLLLASVKTWLKSDGTFLLCHIPRADVSHDVLQSALAAHGFAFGI 221
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A067BSN2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSN2_SAPPC) HSP 1 Score: 98.2 bits (243), Expect = 3.160e-19 Identity = 81/271 (29.89%), Postives = 107/271 (39.48%), Query Frame = 1
Query: 235 SNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTG-KSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCV--VMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAF 1038
+ S EISGQR+W GS LL YL H +D K VLELGAGTG+ S+++ GA+ +V TDGD + V V+A N++ N A A L WGD S +F + F + GR FD ++AGDVLYK L+ L TVR LA GR +LCH+PRA V++D+++ AL GF F
Sbjct: 53 ATSSEISGQRIWPGSYLLAEYLHAH-----------------------VDIVAAKRVLELGAGTGLASLVSRLAGATDLVATDGDLEVVNDVLAW-NVQSNAPDATNLHTASLWWGDAASNASFAERFGD---------------------------------------------------------------------------GR-----FDVLIAGDVLYKGELVQLLLSTVRTWLAPHGRFVLCHIPRADVSHDVLQAALTAHGFRF 219
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A7S2XZT6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZT6_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 8.790e-19 Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 1
Query: 178 LPLEMLMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTF 597
LPLE+L L+ R+ +EISG+RLW GS +L +++ + G+ L F+GK+V+ELGAGTGV MLA LGA V++TDGD +CV ++N+++N + A L WGD ES +F
Sbjct: 3 LPLEVLADLESRK---------DEISGRRLWSGSTILAHFMINISEATAIGR--------------SLSFSGKNVVELGAGTGVCGMLARYLGAQKVLITDGDKECVNFIKENLQDNSMDDGSCTAAHLFWGDRESMASF 119
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A6G0WHQ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHQ3_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 9.620e-17 Identity = 88/356 (24.72%), Postives = 129/356 (36.24%), Query Frame = 1
Query: 175 ALPLEMLMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVV-MAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAFEILNGDQKKRSGGSCSKGDQDPEGGTGSSLAVEAAQGSRCDTTAVGGVDLCVDDARRARLYDVHLLN 1239
A L ML ++ E S EISGQR+W GS LL ++ EH E N K VLELGAGTG+VS++A+ G + TDGD V + + N++ N ++ A L WGDN S+ F F + E FD ++AGDVLYK L+ L TV++ L G +LCH+PRA V++++++ L GF + +L EAAQ R D +DD ++A++Y + + +
Sbjct: 36 AASLSMLTEMTETTS---------EISGQRIWPGSYLLAEFVHEHP-----------ELVAN-----------KRVLELGAGTGLVSLVANLAGTRAAIATDGDMSVVTDILEWNVQHNAPPSSTIDTASLWWGDNSSSGEFRRRFGD--------------------------------------------------------------------------------ELFDIVVAGDVLYKGELVPLLLTTVKEWLHPEGIFVLCHIPRADVSHEVLQRELTSHGFKWTLLQ----------------------------EAAQAGRLPE------DCSMDDVKKAKVYRIEIFH 246
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A024GNH1_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNH1_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.620e-16 Identity = 83/318 (26.10%), Postives = 117/318 (36.79%), Query Frame = 1
Query: 109 DYDVQEVRLLDHVFKVTTVANEALPLEMLMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGR------MLLCHVPRAGVTYDIVETALVEAGFAFEI 1044
+Y+V+EV + H V + +L +M L E S EISG R+W GSL L YL H G LELGAGTG+ S++A +LGA + TDGDD+ V + +N++ N+ A + VL WGD +S T FC F + +++ + ILA DVLYK L+ +V + LLCHVPRA V++D+VE AL A F + +
Sbjct: 11 EYEVKEVSIGMHTLFVYQMRELSLD-DMFAMLSEMDS------KQTEISGTRIWTGSLALSHYLFMHAD----------------------ILQGACTLELGAGTGMCSIVAKKLGAETCIATDGDDRVVQILTRNVQLNKEAVH---AHVLSWGDAKSHTQFCTEFPDLKSK------------------------------------------------------------------------------LNLILAADVLYKAMLIPLLFNSVEFFFSDSSDSEQSRLFLLCHVPRAEVSHDMVEKALKAARFEYSV 218
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A1V9ZFX3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFX3_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.950e-16 Identity = 76/272 (27.94%), Postives = 106/272 (38.97%), Query Frame = 1
Query: 235 SNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCV--VMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAFEI 1044
+ S EISGQR+W GS LL Y+ +K K VLELGAGTG+VS++A GA+ VV TDGD + V ++A NI N A A L WG++ S+ F + F + + FD I+AGDVLYK L+ L +V++ L G +LCH+PRA V++++++ AL E AF I
Sbjct: 52 ATSSEISGQRIWPGSYLLAEYV----------------------HANKDLVANKRVLELGAGTGLVSLVAQIAGATNVVATDGDVEVVKEILAW-NIANNAKADGNVKAASLFWGNSTSSAAFQEQFGK--------------------------------------------------------------------------------DLFDVIVAGDVLYKGELIPLLLASVKEWLQPNGIFVLCHIPRADVSHEVLQKALTEQNMAFAI 220
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: D0P1I8_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P1I8_PHYIT) HSP 1 Score: 89.4 bits (220), Expect = 4.410e-16 Identity = 79/273 (28.94%), Postives = 104/273 (38.10%), Query Frame = 1
Query: 235 SNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRM----LLCHVPRAGVTYDIVETALVEAGFAFE 1041
+N EISG RLW GS L YL H +L GK VLELGAGTG+ S+++ +LGA + TDGD++ V + KN++ NE A + L WGD S T F PG L D +LAGDVLYK LL TV +LAS + +LCH+PRA VT+D+V+ ++ +G FE
Sbjct: 58 ANVTEISGTRLWTGSHFLSRYLWRH---------------------PEL-VRGKRVLELGAGTGICSIVSSKLGAVKCLATDGDEEVVELLAKNVQVNE-AEDVVTARSLFWGDEPSAQTLLKEF-----------------------------------------------------------------PG-------------ALTDVDVVLAGDVLYKSELLPLLFATVTRVLASDDDVERAFVLCHIPRAEVTHDLVQKQIINSGLNFE 229
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A662WUX6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUX6_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 6.300e-16 Identity = 90/316 (28.48%), Postives = 123/316 (38.92%), Query Frame = 1
Query: 106 LDYDVQEVRLLDHVFKVTTVANEALPLEM-LMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGR---MLLCHVPRAGVTYDIVETALVEAGFAFE 1041
++Y+ + V + D +V E LP+ L L E + N+ EISG RLW GS L YL H +L GK VLELGAGTG+ S++A +LGA+ + TDGD + V + KN+E N A + L WGD ST T +E+ +A + D +LAGDVLYK+ LL TV +LAS +LCHVPRA VT+D+V+ + +G FE
Sbjct: 42 VEYETKRVAVGD--LEVQVFQMEELPVAASLFMLAEMDA------NAAEISGTRLWTGSHFLSRYLWRH---------------------PEL-VRGKRVLELGAGTGICSIVAFKLGAARCLATDGDAEVVELLAKNVEVNG-AVDVVTARSLFWGDEASTETLL--------------------------------------------------AEIPDA----------------------------FAATDVVLAGDVLYKRELLPLLFATVTRVLASSDSNRAFVLCHVPRADVTHDVVQQQIEASGLQFE 248 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1215.1 >prot_C-linearis_contig11.1215.1 ID=prot_C-linearis_contig11.1215.1|Name=mRNA_C-linearis_contig11.1215.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=398bp MRAIRPLQEYDLDYDVQEVRLLDHVFKVTTVANEALPLEMLMQLQERRSGback to top mRNA from alignment at C-linearis_contig11:1065461..1069153- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1215.1 ID=mRNA_C-linearis_contig11.1215.1|Name=mRNA_C-linearis_contig11.1215.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3693bp|location=Sequence derived from alignment at C-linearis_contig11:1065461..1069153- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:1065461..1069153- >mRNA_C-linearis_contig11.1215.1 ID=mRNA_C-linearis_contig11.1215.1|Name=mRNA_C-linearis_contig11.1215.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2388bp|location=Sequence derived from alignment at C-linearis_contig11:1065461..1069153- (Chordaria linearis ClinC8C monoicous)back to top |