mRNA_C-linearis_contig11.1203.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1203.1 vs. uniprot
Match: D8LGG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG0_ECTSI) HSP 1 Score: 378 bits (971), Expect = 1.380e-129 Identity = 206/299 (68.90%), Postives = 219/299 (73.24%), Query Frame = 1
Query: 1 NQIKWAIMNPGEDMPSPRVTKRFETTSLAGTEYVASRRGEVPDRATMIRELEQRKLLNTKASVAFGSAKIFYESDAMSRQKDILGAPPRGEDQKRNKELKQALTKTHFTFGDEPMVYERTSTLPDPTGHLEDYTGVLNTEVKNMIKSTNLSFGNAPTQYRTMATDQMDLRMPQGEDRGAQLEKNRQLKVALTRTHFKFGEEEMDYTTDHQMGFRYDPEKVKLAGNNGLAKEVXXXXXXXXXXXXXXXXXXXXXTMRTQRASGGMLATAEERQAQVDKNKALKKQLQTTHYEIGTDDDYM 897
++IKWAIMN GE+MPSPR TKRFETTSLAGTEYVASRRGEVPDR TMIRELEQRKL NT+ASVAFGSAKI YESDAMSRQKDILGAPPRGED+KRNKELKQALT+THFTFG+EPMVYERTSTLPDPTGHL+DYTGVLNT RTMATDQMDL++PQGEDRG QLEKNRQL KVKLAGN GLAKEV MRTQRASGGM+ATAEERQAQ+DKN+ALKKQLQTTHYEIGTDDDYM
Sbjct: 5 HKIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLDDYTGVLNTXXXXXXXXXXXXXXXXXXXXRTMATDQMDLQVPQGEDRGVQLEKNRQL-------------------------------KVKLAGNRGLAKEVKADLSRTHFTLGNHKFDWQTDAMRTQRASGGMVATAEERQAQIDKNRALKKQLQTTHYEIGTDDDYM 272
BLAST of mRNA_C-linearis_contig11.1203.1 vs. uniprot
Match: A0A835YW84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW84_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.800e-44 Identity = 114/301 (37.87%), Postives = 149/301 (49.50%), Query Frame = 1
Query: 139 MIRELEQRKLLNTKASVAFGSAKIFYESDAMSR-------------------QKDILGAPPRGEDQKRNKELKQALTKTHFTFGDEPMVYERTSTLPDPTGHLEDYTGVLNTEVKNMIKSTNLSFG-------------------------NAPTQYRTMATDQMDLRMPQG---EDRGAQLEKNRQLKVALTRTHFKFGEEEMDYTTDHQMGFRYDPEKVKLAGNNGLAKEVXXXXXXXXXXXXXXXXXXXXXTMRTQR-ASGGMLATAEERQAQVDKNKALKKQLQTTHYEIGTDDDYM 897
M EL +RKL NT+ S+A GSA YE+DA + QKDIL + G D++ N+ LK LT+T F+ GDE + Y+R S LPDPTG L ++TGVLN EVK M+K +N+ FG NA Y T A + M G D A L+ NR LKVALTRT+ FG+E +Y +D++ GF+YD ++VK AG L+KEV R R A + EE Q + N+ LK+ LQ T+Y IGTD DYM
Sbjct: 1 MASELHRRKLNNTRTSIALGSAPTVYETDAQGQLPAPMYATLHCGRYESQAHQKDILSSHSAGADREHNRLLKAQLTRTTFSLGDERVDYQRVSALPDPTGRLHEFTGVLNAEVKEMMKRSNMYFGEPGGNFAKGHVLRNPALLLRLPLPGNAAPSYDTAAHEGMQAVGASGVAAADMQATLQHNRDLKVALTRTNLNFGDEVPEYVSDYKRGFKYDADEVKSAGRACLSKEVKDDLRRSHFKFGTDPVVWETDARRNMRQAEQAEHSGPEEVARQREHNRLLKQSLQRTNYAIGTDADYM 301
BLAST of mRNA_C-linearis_contig11.1203.1 vs. uniprot
Match: A0A7S2FEP3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEP3_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 3.660e-15 Identity = 62/155 (40.00%), Postives = 80/155 (51.61%), Query Frame = 1
Query: 40 MPSPRVTKRFETTSLAGTEYVASRRGEVPDRATMIRELEQRKLLNTKASVAFGSAKIFYESDAMSRQKDILGAPPRGEDQKRNKELKQALTKTHFTFGDEPMVYERTST-----LPDPTGHLEDYTGVLNTEVK--NMIKSTNLSFGNAPTQYRT 483
MPS KRF TT + E VA RR EV +R M L RKL NT+ S+ FGS + YESDAM RQKDILG G D K KELK L K++ G + T+T P+ T E+ V ++K IK++++ G+ Y T
Sbjct: 1 MPS----KRFTTTLNSSLEAVAKRRDEVENRQQMSASLRGRKLANTQTSIVFGSDSVVYESDAMRRQKDILGNKSAGADAKACKELKLGLQKSNIAIGTDSDTSYSTTTGGAFFYPEKTTTREEDMKVAEDKLKLKMAIKTSSIKLGSDVGTYST 151 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1203.1 >prot_C-linearis_contig11.1203.1 ID=prot_C-linearis_contig11.1203.1|Name=mRNA_C-linearis_contig11.1203.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=293bp MNPGEDMPSPRVTKRFETTSLAGTEYVASRRGEVPDRATMIRELEQRKLLback to top mRNA from alignment at C-linearis_contig11:968354..971747- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1203.1 ID=mRNA_C-linearis_contig11.1203.1|Name=mRNA_C-linearis_contig11.1203.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3394bp|location=Sequence derived from alignment at C-linearis_contig11:968354..971747- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:968354..971747- >mRNA_C-linearis_contig11.1203.1 ID=mRNA_C-linearis_contig11.1203.1|Name=mRNA_C-linearis_contig11.1203.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at C-linearis_contig11:968354..971747- (Chordaria linearis ClinC8C monoicous)back to top |