mRNA_C-linearis_contig11.1197.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1197.1
Unique NamemRNA_C-linearis_contig11.1197.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:885679..886147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.2115362-CDS-C-linearis_contig11:885678..8860231622927428.2115362-CDS-C-linearis_contig11:885678..886023Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 885679..886023 +
1690879694.455435-CDS-C-linearis_contig11:885678..8860231690879694.455435-CDS-C-linearis_contig11:885678..886023Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 885679..886023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.2243404-UTR-C-linearis_contig11:886023..8861471622927428.2243404-UTR-C-linearis_contig11:886023..886147Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 886024..886147 +
1690879694.463816-UTR-C-linearis_contig11:886023..8861471690879694.463816-UTR-C-linearis_contig11:886023..886147Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 886024..886147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1197.1prot_C-linearis_contig11.1197.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 885679..886023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1197.1

>prot_C-linearis_contig11.1197.1 ID=prot_C-linearis_contig11.1197.1|Name=mRNA_C-linearis_contig11.1197.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=115bp
GVITVCRYLADNFCAFCHSFGTLPRTSVGSVADPYPTENLCKFCIQCPTP
SVSSVTAAPQYHPYLFSEFCDSFGTLPRTSVTSSVTDPIPYRHYPYRAEP
DRGSNSPHHLFRGG*
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mRNA from alignment at C-linearis_contig11:885679..886147+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1197.1 ID=mRNA_C-linearis_contig11.1197.1|Name=mRNA_C-linearis_contig11.1197.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=469bp|location=Sequence derived from alignment at C-linearis_contig11:885679..886147+ (Chordaria linearis ClinC8C monoicous)
GGGGTAATTACTGTCTGTAGGTACCTCGCAGACAACTTCTGTGCGTTCTG
TCACAGTTTCGGTACCCTACCGAGAACTTCTGTGGGTTCTGTAGCAGATC
CGTACCCTACCGAGAACTTGTGTAAGTTCTGTATACAATGCCCTACACCT
TCTGTGAGTTCTGTGACCGCAGCGCCACAATACCACCCTTACTTATTCTC
TGAGTTCTGTGACAGTTTCGGTACCCTACCGAGAACTTCTGTGACTTCTT
CTGTAACAGATCCAATACCCTACCGACATTACCCGTACCGTGCAGAACCT
GACCGTGGAAGTAATTCCCCACATCATCTGTTTCGTGGGGGTTAACAGAC
CGAACACACAACCAGAGAAATCTGTATCCATATGGAAGCTGTAACGGCAA
AACGCACCCCGCCGATTACCCACAACCAATAAATACAGTGAAACACCGGC
GCCGCCACCGTAATCAACA
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Coding sequence (CDS) from alignment at C-linearis_contig11:885679..886147+

>mRNA_C-linearis_contig11.1197.1 ID=mRNA_C-linearis_contig11.1197.1|Name=mRNA_C-linearis_contig11.1197.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at C-linearis_contig11:885679..886147+ (Chordaria linearis ClinC8C monoicous)
GGGGTAATTACTGTCTGTAGGTACCTCGCAGACAACTTCTGTGCGTTCTG
TCACAGTTTCGGTACCCTACCGAGAACTTCTGTGGGTTCTGTAGCAGATC
CGTACCCTACCGAGAACTTGTGTAAGTTCTGTATACAATGCCCTACACCT
TCTGTGAGTTCTGTGACCGCAGCGCCACAATACCACCCTTACTTATTCTC
TGAGTTCTGTGACAGTTTCGGTACCCTACCGAGAACTTCTGTGACTTCTT
CTGTAACAGATCCAATACCCTACCGACATTACCCGTACCGTGCAGAACCT
GACCGTGGAAGTAATTCCCCACATCATCTGTTTCGTGGGGGTTAAGGGGT
AATTACTGTCTGTAGGTACCTCGCAGACAACTTCTGTGCGTTCTGTCACA
GTTTCGGTACCCTACCGAGAACTTCTGTGGGTTCTGTAGCAGATCCGTAC
CCTACCGAGAACTTGTGTAAGTTCTGTATACAATGCCCTACACCTTCTGT
GAGTTCTGTGACCGCAGCGCCACAATACCACCCTTACTTATTCTCTGAGT
TCTGTGACAGTTTCGGTACCCTACCGAGAACTTCTGTGACTTCTTCTGTA
ACAGATCCAATACCCTACCGACATTACCCGTACCGTGCAGAACCTGACCG
TGGAAGTAATTCCCCACATCATCTGTTTCGTGGGGGTTAA
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