mRNA_C-linearis_contig11.1179.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1179.1
Unique NamemRNA_C-linearis_contig11.1179.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: D8LGE9_ECTSI (DUF1681 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE9_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 3.190e-104
Identity = 159/186 (85.48%), Postives = 170/186 (91.40%), Query Frame = 3 
Query:  318 LVIEQPLLTIKEVFVYQVPPLRASSGHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKPPPEGELGGLPELFAECAVRLDNGRTMQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSAVERQEADGEEYLGPVKPMKDLSIAEGKKVHLDLKVGS 875
            LVIEQPLLTIKEVFVY+VPPLRASSGHRAEEWGLANPVFTG LK  QVGNACCLRLFKPPPEGELG  PELFA+C VRLD GRT+QVYVESVIDSSRYFVLRCED+ASGRHAYVG+GFRERSSAFD KAVLDDFV+FLDRQKRAEETSA+E +E  GEE LGPVK MKDLSIAEG+K+H+ LK  S
Sbjct:   53 LVIEQPLLTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKIAQVGNACCLRLFKPPPEGELGATPELFAQCEVRLDGGRTLQVYVESVIDSSRYFVLRCEDKASGRHAYVGVGFRERSSAFDFKAVLDDFVRFLDRQKRAEETSAIEEEE--GEEALGPVKLMKDLSIAEGQKLHIGLKDNS 236
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BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: A0A6H5L105_9PHAE (DUF1681 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L105_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 8.580e-74
Identity = 117/143 (81.82%), Postives = 129/143 (90.21%), Query Frame = 3 
Query:  438 GFLKAVQVGNACCLRLFKPPPEGELGGLPELFAECAVRLDNGRTMQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSAVERQEADGEEYLGPVKPMKDLSIAEGKKVHLDLK 866
            G LK  QVGNACCLRLFKPPPEGELG  PELFA+C V LD GRT+QVYVESVIDSSRYFVLRCED+ASGRHAYVG+GFRERSSAFD KAVLDDFV+FLDRQKRAE+TSA++ +E  GEE LGPVKPMKDLSIAEG+K+H+ LK
Sbjct:    4 GVLKIAQVGNACCLRLFKPPPEGELGATPELFAQCEVLLDGGRTLQVYVESVIDSSRYFVLRCEDKASGRHAYVGVGFRERSSAFDFKAVLDDFVRFLDRQKRAEKTSAIKEEE--GEEALGPVKPMKDLSIAEGQKLHIGLK 144
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BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: A0A836CAQ5_9STRA (DUF1681 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ5_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.330e-56
Identity = 104/208 (50.00%), Postives = 137/208 (65.87%), Query Frame = 3 
Query:  324 IEQPLLTIKEVFVYQVPPLRASSGHRAEEWGLANPVFTGFLKAVQVGNA--------------------CCLRLFKPPPEGELGGLPELFAECAVRLDNGRTMQVYVESVIDSSRYFVLRCEDQA-SGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEE----TSAVERQEADGEEYLGPVKPMKDLSIAEGKKVHLDLKVG 872
            +E PLL IKEVFVY+VPP +A+SGHRAEEWGL NP  TGF++  Q+ +                     C +++F PP EG+LG   +LFA C +R+  GR +Q +VE V+DSSRYFVLRCEDQA SGR AYVG+GFRERS+AFD KA LDD+V+ + RQ++AE      ++V+  E    E   P+ P+ DLS+  G+K+HL L  G
Sbjct:   48 VEVPLLYIKEVFVYRVPPAKAASGHRAEEWGLENPALTGFMRISQLDDQSLVTLALTLKEAGAEYAVRWCLVKMFVPPKEGDLGAAAQLFATCCIRVGGGRFLQHFVEHVMDSSRYFVLRCEDQAGSGRVAYVGVGFRERSTAFDFKAALDDYVRSVQRQQQAERLRDRANSVDAAEDGSSEQRAPLPPVPDLSLHAGQKIHLSLPGG 255
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BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: A0A2R5GHP2_9STRA (Adaptin ear-binding coat-associated protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHP2_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.850e-40
Identity = 89/198 (44.95%), Postives = 123/198 (62.12%), Query Frame = 3 
Query:  336 LLTIKEVFVYQVPPLRASSGHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKPPPEGELGGLPELFAECAVRLDNGRT-----MQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSAVERQEADGEEYLGPVK--PMKDLSIAEGKKVHLDLKVGSNAGSSRARRRP 908
            LLTIKEVFVY++PPL+ S GH A +W L  P  TG L+ +  G+   L++ + P      GLP+LFA C ++LD   +     +  +V+SV+DSSRYFV+R +D+ S RHAY+GIGF+ER SAFDL+A LDD V+   R  R E   A E  E++    L PV   P  D S+ EG+ + + L +G   GS  AR++P
Sbjct:   20 LLTIKEVFVYKIPPLQGSRGHHAADWNLDKPALTGQLRVISKGDKVYLQILQLPESS--AGLPQLFASCPIKLDTDASKPASKLDYFVQSVVDSSRYFVIRVQDEVSKRHAYIGIGFQERQSAFDLRAALDDEVR---RISRGEHLLAAEDDESND---LPPVDAPPAVDRSLKEGETIKVKLNIG---GSGTARKKP 206
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BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: A0A7S2SVJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVJ6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.170e-40
Identity = 89/201 (44.28%), Postives = 121/201 (60.20%), Query Frame = 3 
Query:  315 ELVIEQPLLTIKEVFVYQVPPLRASSGHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKPPPEGELGGLP----ELFAECAVRLDNGRT-MQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSAVERQEA-----------DGEEYLGPVKPMK-DLSIAEGKKVHLDLK 866
            E ++E  LLT++E FVY+VPPLR+  GHRAE+WGL NPV T  LK VQ G+   +RLF+P    +   L      LFAEC VRL   +  +  +VE V+DSSRYFVLR ED  + +HA++G GFRER  AFD KA L D+ +++ R ++A+E +    Q             DG     P +P   DLS+ +G+K+ L LK
Sbjct:   12 ENMVELALLTLEECFVYRVPPLRSHQGHRAEDWGLHNPVVTAVLKVVQRGDELRVRLFEPRKTKQNENLETTELHLFAECPVRLVGVKQQLSHFVEEVVDSSRYFVLRIEDPKTSKHAFIGAGFRERQMAFDFKATLADYSRYVHRLRQAQEAAQTPAQRRTDPGTPGLPAEDGASAQDPRRPPSPDLSLRKGEKIRLSLK 212
[Close]
BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: A0A7S3GU29_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU29_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.250e-35
Identity = 73/153 (47.71%), Postives = 102/153 (66.67%), Query Frame = 3 
Query:  315 ELVIEQPLLTIKEVFVYQVPPLRASSGHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKPPPEGELGGLPE---LFAECAVRLDNGRTMQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSA 764
            E  +E  LLTIKE FVY+VPPLR +SGHRAE+WGLANP+FTG LK  Q G+   L ++    + +     E   LF EC + +  G  +  +V++VIDSSRY+V++ +D  S R   +G+GFRER  AFDLK  L+++VKF++R + A + SA
Sbjct:    7 ESTVELCLLTIKECFVYKVPPLRTASGHRAEDWGLANPLFTGCLKLFQSGDTLRLAIYAFKDQQKTSITDENIQLFGECPIHVKPGENIIQFVDAVIDSSRYYVVKIKDPKSTRTTLLGVGFREREDAFDLKNSLNEYVKFINRMELASQMSA 159
[Close]
BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: W2QCH9_PHYPN (DUF1681 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QCH9_PHYPN)

HSP 1 Score: 140 bits (353), Expect = 2.490e-35
Identity = 78/200 (39.00%), Postives = 119/200 (59.50%), Query Frame = 3 
Query:  324 IEQPLLTIKEVFVYQVPPLRASS-GHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKP-PPEGELGGLPELFAECAVRLDNGRTMQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSAVERQEADGEEYLGPVKPMKDLSIAEGKKVHLDLKVGSNAGSSRARRRPRSG 917
            +E+ L + K V+ YQVP  + +S   RA+ W   +P  TG ++ +Q G+AC ++LF+P   E E    P LFA+C +++     + VYV   +DSSRYF+LR ED+ SGR A+VGIGF +R++AF+ KA L D+ K+  RQ   E+ +A   + + GE     + P KDLS+ +G  + ++LK        R+ RR  SG
Sbjct:   10 LERSLFSEKGVWFYQVPAGQVTSLAPRADAWDPEHPFLTGSVRVMQKGDACFVQLFEPVADEAEASATPTLFAQCPLQISRELALDVYVHDCVDSSRYFMLRVEDEQSGRRAFVGIGFPDRTAAFNFKATLQDYAKYALRQLEVEQETAEAAETSVGE----GMSPKKDLSLPQGTTIRINLKTNGADDGERSTRRRSSG 205
[Close]
BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: G4ZQL9_PHYSP (DUF1681 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZQL9_PHYSP)

HSP 1 Score: 140 bits (353), Expect = 2.910e-35
Identity = 80/201 (39.80%), Postives = 116/201 (57.71%), Query Frame = 3 
Query:  324 IEQPLLTIKEVFVYQVPPLRASS-GHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKP----PPEGELGGLPELFAECAVRLDNGRTMQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSAVERQEADGEEYLGPVKPMKDLSIAEGKKVHLDLKVGSNAGSSRARRRPR 911
            +E+ L + K V+ YQVP  + +S   RA+ W   +P  TG ++ VQ G+AC ++LF+P      E E    P LFA+C +++     + VYV   +DSSRYF+LR ED+ S R A+VGIGF +R++AF+ KA L D+ K+  RQ   E+  A E+Q   G     P KP  DLS+ +G  + ++LK        RA  RPR
Sbjct:   10 LERALFSEKGVWFYQVPANQVTSLAPRADAWDPEHPFLTGSVRVVQRGDACFVQLFEPVAAEQDEAETAATPTLFAQCPLQITRELALDVYVHDCVDSSRYFMLRVEDEQSDRRAFVGIGFPDRTAAFNFKATLQDYAKYALRQLEVEQVEAAEQQTGSGGSS-SPKKP--DLSLPQGTTIRINLKTNGAEDGERAATRPR 207
[Close]
BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: A0A2P4XT47_9STRA (Adaptin-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XT47_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.500e-34
Identity = 77/196 (39.29%), Postives = 115/196 (58.67%), Query Frame = 3 
Query:  324 IEQPLLTIKEVFVYQVPPLRASS-GHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKPPPEGELGGLPELFAECAVRLDNGRTMQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSAVERQEADGEEYLGPVKPMK-DLSIAEGKKVHLDLKVGSNAGSSRARRR 905
            +E+ L   K V+ YQVP  + +S   RA+ W   +P  TG L+ +Q G+AC ++LF+P  + +    P LFA+C +++    TM VYV   +DSSRYF+LR ED+ SGR A+VGIGF +R+ AF+ KA + D+ K+  RQ   +       QE + +E  G + P K DLS+ EG  + ++LK   N    + R R
Sbjct:    7 LERSLFNEKGVWFYQVPAGQVTSLAPRADAWDPEHPFLTGSLRVLQKGDACFIQLFEPQTDTDAA--PSLFAQCPLQITRELTMDVYVHDCVDSSRYFMLRVEDEKSGRRAFVGIGFPDRTVAFNFKATVQDYAKYALRQLEVQ-------QETEMKETAGQISPKKPDLSLPEGTTIRINLKKNGNEDGEKTRTR 193
[Close]
BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Match: A0A225X4N7_9STRA (Adaptin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X4N7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.480e-34
Identity = 78/200 (39.00%), Postives = 120/200 (60.00%), Query Frame = 3 
Query:  324 IEQPLLTIKEVFVYQVPPLRASS-GHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKPPPEGELGGLPELFAECAVRLDNGRTMQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAFDLKAVLDDFVKFLDRQKRAEETSAVERQEADGEEYLGPVKPMKDLSIAEGKKVHLDLKV-GSNAGSSRARRRPRSG 917
            +E+ LL+ + V+ YQVP  + +S   RA+ W + +P  TG L+ +Q G+AC ++LF+P  + E    P LFA+C +++   + + VYV   +DSSRYF+LR ED+ SGR A+VG+GF +R++AF+ KA L D+ K+  RQ   ++ +  +  E        P KP  DLS+ EG  + + LK  GS+ G     RR  SG
Sbjct:    7 LERTLLSERGVWFYQVPSGQVTSLAPRADAWDVEHPFLTGSLRVLQKGDACFIQLFEPQTDAEAA--PTLFAQCPLQISREQMLDVYVHDCVDSSRYFMLRVEDEKSGRRAFVGVGFPDRTAAFNFKATLQDYAKYALRQLEVQQDTKEQTTE-----QSSPKKP--DLSLPEGTTIRIHLKKNGSDDGDKTRTRRSSSG 197
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE9_ECTSI3.190e-10485.48DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L105_9PHAE8.580e-7481.82DUF1681 domain-containing protein (Fragment) n=1 T... [more]
A0A836CAQ5_9STRA2.330e-5650.00DUF1681 domain-containing protein n=1 Tax=Tribonem... [more]
A0A2R5GHP2_9STRA1.850e-4044.95Adaptin ear-binding coat-associated protein 1 n=1 ... [more]
A0A7S2SVJ6_9STRA5.170e-4044.28Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3GU29_9STRA2.250e-3547.71Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W2QCH9_PHYPN2.490e-3539.00DUF1681 domain-containing protein n=10 Tax=Phytoph... [more]
G4ZQL9_PHYSP2.910e-3539.80DUF1681 domain-containing protein n=4 Tax=Phytopht... [more]
A0A2P4XT47_9STRA2.500e-3439.29Adaptin-like protein n=1 Tax=Phytophthora palmivor... [more]
A0A225X4N7_9STRA3.480e-3439.00Adaptin n=1 Tax=Phytophthora megakarya TaxID=4795 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:553680..557337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.9
Seed ortholog evalue3.2e-84
Seed eggNOG ortholog2880.D8LGE9
Preferred nameNECAP1
KEGG koko:K04554,ko:K20069
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005905,GO:0006810,GO:0006897,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030659,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0071840,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805
EggNOG free text desc.endocytosis
EggNOG OGsKOG2500@1,KOG2500@2759
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-16_003790.1
EC2.3.2.23
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04131
Exons6
Model size1252
Cds size1158
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927433.9027317-UTR-C-linearis_contig11:553679..5537711622927433.9027317-UTR-C-linearis_contig11:553679..553771Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 553680..553771 +
1690879697.4823408-UTR-C-linearis_contig11:553679..5537711690879697.4823408-UTR-C-linearis_contig11:553679..553771Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 553680..553771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927433.9147317-CDS-C-linearis_contig11:553771..5541171622927433.9147317-CDS-C-linearis_contig11:553771..554117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 553772..554117 +
1690879697.4974825-CDS-C-linearis_contig11:553771..5541171690879697.4974825-CDS-C-linearis_contig11:553771..554117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 553772..554117 +
1622927433.9388866-CDS-C-linearis_contig11:554992..5551611622927433.9388866-CDS-C-linearis_contig11:554992..555161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 554993..555161 +
1690879697.5059023-CDS-C-linearis_contig11:554992..5551611690879697.5059023-CDS-C-linearis_contig11:554992..555161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 554993..555161 +
1622927433.9546125-CDS-C-linearis_contig11:555736..5557951622927433.9546125-CDS-C-linearis_contig11:555736..555795Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 555737..555795 +
1690879697.514216-CDS-C-linearis_contig11:555736..5557951690879697.514216-CDS-C-linearis_contig11:555736..555795Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 555737..555795 +
1622927433.9709256-CDS-C-linearis_contig11:556049..5561531622927433.9709256-CDS-C-linearis_contig11:556049..556153Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 556050..556153 +
1690879697.522591-CDS-C-linearis_contig11:556049..5561531690879697.522591-CDS-C-linearis_contig11:556049..556153Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 556050..556153 +
1622927434.000558-CDS-C-linearis_contig11:556599..5566951622927434.000558-CDS-C-linearis_contig11:556599..556695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 556600..556695 +
1690879697.5327435-CDS-C-linearis_contig11:556599..5566951690879697.5327435-CDS-C-linearis_contig11:556599..556695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 556600..556695 +
1622927434.013387-CDS-C-linearis_contig11:556953..5573371622927434.013387-CDS-C-linearis_contig11:556953..557337Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 556954..557337 +
1690879697.5411296-CDS-C-linearis_contig11:556953..5573371690879697.5411296-CDS-C-linearis_contig11:556953..557337Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 556954..557337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1179.1prot_C-linearis_contig11.1179.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 553772..557337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1179.1

>prot_C-linearis_contig11.1179.1 ID=prot_C-linearis_contig11.1179.1|Name=mRNA_C-linearis_contig11.1179.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=386bp
MAAEESKDSSSSSSNSSSNDAEGQHGVTEGGVDREGTAGTGTGTTAVEKE
NKETKGDASKKSKPKEESKEEQEEELVIEQPLLTIKEVFVYQVPPLRASS
GHRAEEWGLANPVFTGFLKAVQVGNACCLRLFKPPPEGELGGLPELFAEC
AVRLDNGRTMQVYVESVIDSSRYFVLRCEDQASGRHAYVGIGFRERSSAF
DLKAVLDDFVKFLDRQKRAEETSAVERQEADGEEYLGPVKPMKDLSIAEG
KKVHLDLKVGSNAGSSRARRRPRSGAATKAAGGSGGGGLLLAPPPLPGAT
YKGAAVAGSGADSGAGSTSPPTPGGSAAEATPSVVSPEAEATVSSAVEDN
NIAPPAATSPASGEPPDEGPKAVDAGIGVGEKSSNG
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mRNA from alignment at C-linearis_contig11:553680..557337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1179.1 ID=mRNA_C-linearis_contig11.1179.1|Name=mRNA_C-linearis_contig11.1179.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3658bp|location=Sequence derived from alignment at C-linearis_contig11:553680..557337+ (Chordaria linearis ClinC8C monoicous)
GCTGTGTGTTGTATCCCGAGAATTGCTGGGTTTTCATCGAGAGCTAACTG
CCCGACAGGTTGATTTACATAAGACGGCCGGCGAACAAGGATATGGCTGC
AGAAGAAAGCAAAGACAGTAGCAGCAGCAGCAGCAACAGCAGCAGCAACG
ATGCGGAGGGACAGCACGGAGTGACAGAAGGGGGAGTTGATCGCGAGGGA
ACAGCAGGCACAGGCACAGGCACCACTGCCGTGGAGAAGGAGAATAAAGA
GACAAAAGGGGATGCGAGTAAGAAGAGCAAGCCCAAGGAGGAGAGCAAGG
AGGAGCAGGAGGAGGAGCTGGTGATCGAACAGCCCTTGTTGACGATCAAG
GAAGTCTTCGTGTACCAAGTTCCGCCGCTGAGGGCTAGCTCCGGCCACCG
CGCCGAGGAGTGGGGGCTGGCGAATCCCGTTTTCACTGGTGAGTGATGGC
AGACCTTTCCTTAAGAGCACCTTGTAGTTTTATCGTCATGGGTTTTTCAC
CTCTGGCAAACAAAATTGGGTTGTTGAATGTTTTTCGGCACGATACCAAG
CTTGCGGCACGATACCAAGCTTGGCAAGCTTGTTGAGGCGCTGTCCTGTC
ATGCATTTTTGTCTCGCTGGTTGGATCAATTACGTCTCGTCTCCTCAAGT
CCGTAGACGACGCTTTCGTGTGGCCCATGTGTTTCTTGTATCCTGAACCT
GAGCGGTAGGAGCTCGACATTACGAGCCAGTATACAGCTGGTCGCCCCGG
TGGCCTAGTGGTTTAACCTCGAACCCACTGAGAGTTCAATTCCAAGCAAA
GGTGATTATTTTGCGACTTTGCCGGTGAAAGCGATAACATAGCTGAAAAA
AGCTCGTGAGTACCAAACTTCGACTTAGCACGTTGACGAGGGAAAGGGAT
GGCTGCACCCTTCTCGCGATAAAACCCAAGGCAAGCACCGCTGGAGGAAG
ATGGGGCAAAAAAAGAAACAGAAAAAGGCGAAAAAAGCCCCAGTGTTTAC
CCCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGAAAAATACACTG
AACAAGTGTAGTGCTCTAAATACACCGCAACGTGTAGTACACGTCTCGCC
TTGAGCGGAAAGGGACTGTCGCCAAAATAAATGGGACGAAAACTCACACA
CATACACACACAGACAAGCTACGGACAAAGCCTCCACCCACCCCGGCCGT
AGTTAGGGTACAGCAGTAGAAGACTCTTTTTATGAACTGCATCTGATCCT
TGAGTTCATCCGATCCTTGAGTTCGCCCGCATCCTCTCGGCACTGCTGCT
GCTCCTCACTCAGGCTTCTTGAAAGCGGTCCAAGTAGGCAACGCTTGCTG
CCTGCGGCTGTTCAAGCCCCCTCCAGAGGGGGAGCTGGGAGGCCTGCCTG
AGCTGTTCGCCGAATGCGCGGTGCGCCTCGACAACGGGCGTACCATGCAG
GTCTACGTCGAGTCCGTCATCGACTCATCCCGGTGAGATTCCAACCCAGT
CCGGGTTTCCAGCCCCATGTTCATGCCGATTCGTTGGGTGACAGCCAAAC
AAATGAAGAAACTATCGGTCTTTTAAAATAGGTATTTTTGTTCTCCGCCT
ACTGTATCCCATATTAACTTCACTGCTGTATTGAACTGTCAATCCACCAC
CTAGCCACTTAGCCACTTAAGGATTTATCTCTTTGAGGGTAGGTTATTTC
TTTCATGCCGTTTTGATTCATAAACGATTAGTCAACGTGCTCACGTAGTA
AATGCGAGAGATGGAAGAGACAGTTATTGAGATCTCGCTCGGCGCGGAAC
CGTTTGGGTTATCTCCCCAACAAAGTTATCTATGATACCAGCGCGGAAGC
ATTTTGTGCTGCCCTTACGTATCCCTCTACCCGACCTTCTGCGCCGAGAT
GGACTGAAGCTGTATAGTTTTTTTGGGTGCTTGAATATATGTCCGTCTGG
TGCCGTTGTGTTGTGTCTGTCGAGGTATCGTTTAGCTGCCCGCCTCCTTG
TCTGTGATTGTGGGGCTCTTATATTTCCTCTTCGCTTTCCCCCGTCTCTC
GGTGCAGATACTTCGTGCTCCGGTGTGAGGACCAAGCGTCAGGGAGGCAC
GCCTATGTCGGCATAGGTATGATATATGTTGGGGTCTTGAACTCGGTGGA
AAGGAAGTAGGAAGGCGGAAACAGAGGGGAGGGGGGGGACACGCGGGGTC
TCTTGTGGCGTTGATGCGGTGGCGCTAGCTGCACACACCTTTTCCATCAC
GCAGCTTTTGTGGCATATTTGCGCGACTTGCTGTGCGGCTGTGGGCACGT
GTGTGTGGGTGTGTGCCAATTTCTGTTGATGTTTTTTTGTTTCGTGGCGC
GTGTCGTTGAAACGACACAGGTTTCCGCGAGCGCAGCTCAGCGTTCGATT
TAAAGGCCGTGCTCGACGACTTCGTCAAATTCTTGGACAGGCAGAAGCGG
GCGGAGGAGACTTCCGCGGTGGAGGTGAGGTGTGCGGATTACTGCCAGGT
CATGACGTTGTTCGGTTTCGTACATGTTATTGGTATTATTATGGTGACTC
GGGTCGCGTCTTGATCAGCCAGATGTGAAGTGTTGGTTTTAGATGTTGCC
GGGGTTTTGCTACCCTTGCCATCTACCTTCGCTTCGTCTTGCTGTTGTCA
CTACAGAGTCGTTGCATCTTGGTCTGCCGTTGTGGTGTTGCCACTGAAAT
TGTTGCCGCTCTCTGTTGCCCTGATCGGCCGTGTGTGTGTTGTTCGTTTT
CCTCTGTAAATCTGTGCGTACGTCTTTTGTGTAGCTCGTGCTCCTCTCCT
CTGCTCGTGCGAGAGACATTGTTCCTTCTCATAGTCTGCTCTGTCTCTCG
CTCTCGCTCTCGCTCTCGCTCGCTCTCTCCCTCCCTCCCTCCCTCCCGTT
GTCCGTTTCCCGATGAAAAGCGGCAGGAGGCGGACGGGGAAGAATATTTA
GGCCCGGTCAAGCCAATGAAGGACCTCTCCATAGCGGAGGGGAAAAAGGT
TCACCTGGATTTAAAGGTACAGGGCCGGCAATTCGTTGGCCTAGATAACA
TGACGGTAGGCAGTGTAGGCCCGAAACAACAGACAGTACTGCCCGGGCGT
GGAGCGTTACCGTGGAACGTTACCGTTCTCGTCACTCCAAGTTCTCAAGT
GCAGACACCTTCTCTAAAACAGCTTCCTTGCTTGCTTGTGCTTGGAACTA
TCTCTTACCCGCCTGCCACCCCCGCATGCGCCTTCCCCTCCTCCCCCGAA
CTTTATGAACTATTATACTGCAAGGTTGGCTCGAACGCGGGGAGCTCGCG
CGCCCGCCGACGGCCCAGGAGCGGCGCCGCCACCAAAGCCGCAGGAGGAA
GCGGGGGGGGCGGGCTGCTACTGGCCCCGCCCCCGCTCCCGGGGGCCACG
TACAAGGGCGCCGCGGTGGCCGGGTCGGGTGCCGATTCCGGTGCCGGTTC
GACCTCCCCGCCTACGCCAGGGGGCTCCGCAGCTGAGGCGACGCCGTCCG
TTGTTTCGCCTGAAGCCGAGGCGACAGTTTCATCGGCGGTGGAAGATAAT
AATATCGCGCCGCCAGCGGCGACGTCGCCGGCTTCGGGGGAGCCGCCAGA
TGAGGGTCCCAAGGCGGTAGACGCCGGGATCGGGGTTGGGGAAAAAAGTA
GCAATGGT
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Coding sequence (CDS) from alignment at C-linearis_contig11:553680..557337+

>mRNA_C-linearis_contig11.1179.1 ID=mRNA_C-linearis_contig11.1179.1|Name=mRNA_C-linearis_contig11.1179.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2316bp|location=Sequence derived from alignment at C-linearis_contig11:553680..557337+ (Chordaria linearis ClinC8C monoicous)
ATGGCTGCAGAAGAAAGCAAAGACAGTAGCAGCAGCAGCAGCAACAGCAG
CAGCAACGATGCGGAGGGACAGCACGGAGTGACAGAAGGGGGAGTTGATC
GCGAGGGAACAGCAGGCACAGGCACAGGCACCACTGCCGTGGAGAAGGAG
AATAAAGAGACAAAAGGGGATGCGAGTAAGAAGAGCAAGCCCAAGGAGGA
GAGCAAGGAGGAGCAGGAGGAGGAGCTGGTGATCGAACAGCCCTTGTTGA
CGATCAAGGAAGTCTTCGTGTACCAAGTTCCGCCGCTGAGGGCTAGCTCC
GGCCACCGCGCCGAGGAGTGGGGGCTGGCGAATCCCGTTTTCACTGATGG
CTGCAGAAGAAAGCAAAGACAGTAGCAGCAGCAGCAGCAACAGCAGCAGC
AACGATGCGGAGGGACAGCACGGAGTGACAGAAGGGGGAGTTGATCGCGA
GGGAACAGCAGGCACAGGCACAGGCACCACTGCCGTGGAGAAGGAGAATA
AAGAGACAAAAGGGGATGCGAGTAAGAAGAGCAAGCCCAAGGAGGAGAGC
AAGGAGGAGCAGGAGGAGGAGCTGGTGATCGAACAGCCCTTGTTGACGAT
CAAGGAAGTCTTCGTGTACCAAGTTCCGCCGCTGAGGGCTAGCTCCGGCC
ACCGCGCCGAGGAGTGGGGGCTGGCGAATCCCGTTTTCACTGGCTTCTTG
AAAGCGGTCCAAGTAGGCAACGCTTGCTGCCTGCGGCTGTTCAAGCCCCC
TCCAGAGGGGGAGCTGGGAGGCCTGCCTGAGCTGTTCGCCGAATGCGCGG
TGCGCCTCGACAACGGGCGTACCATGCAGGTCTACGTCGAGTCCGTCATC
GACTCATCCCGGCTTCTTGAAAGCGGTCCAAGTAGGCAACGCTTGCTGCC
TGCGGCTGTTCAAGCCCCCTCCAGAGGGGGAGCTGGGAGGCCTGCCTGAG
CTGTTCGCCGAATGCGCGGTGCGCCTCGACAACGGGCGTACCATGCAGGT
CTACGTCGAGTCCGTCATCGACTCATCCCGATACTTCGTGCTCCGGTGTG
AGGACCAAGCGTCAGGGAGGCACGCCTATGTCGGCATAGATACTTCGTGC
TCCGGTGTGAGGACCAAGCGTCAGGGAGGCACGCCTATGTCGGCATAGGT
TTCCGCGAGCGCAGCTCAGCGTTCGATTTAAAGGCCGTGCTCGACGACTT
CGTCAAATTCTTGGACAGGCAGAAGCGGGCGGAGGAGACTTCCGCGGTGG
AGGTTTCCGCGAGCGCAGCTCAGCGTTCGATTTAAAGGCCGTGCTCGACG
ACTTCGTCAAATTCTTGGACAGGCAGAAGCGGGCGGAGGAGACTTCCGCG
GTGGAGCGGCAGGAGGCGGACGGGGAAGAATATTTAGGCCCGGTCAAGCC
AATGAAGGACCTCTCCATAGCGGAGGGGAAAAAGGTTCACCTGGATTTAA
AGCGGCAGGAGGCGGACGGGGAAGAATATTTAGGCCCGGTCAAGCCAATG
AAGGACCTCTCCATAGCGGAGGGGAAAAAGGTTCACCTGGATTTAAAGGT
TGGCTCGAACGCGGGGAGCTCGCGCGCCCGCCGACGGCCCAGGAGCGGCG
CCGCCACCAAAGCCGCAGGAGGAAGCGGGGGGGGCGGGCTGCTACTGGCC
CCGCCCCCGCTCCCGGGGGCCACGTACAAGGGCGCCGCGGTGGCCGGGTC
GGGTGCCGATTCCGGTGCCGGTTCGACCTCCCCGCCTACGCCAGGGGGCT
CCGCAGCTGAGGCGACGCCGTCCGTTGTTTCGCCTGAAGCCGAGGCGACA
GTTTCATCGGCGGTGGAAGATAATAATATCGCGCCGCCAGCGGCGACGTC
GCCGGCTTCGGGGGAGCCGCCAGATGAGGGTCCCAAGGCGGTAGACGCCG
GGATCGGGGTTGGGGAAAAAAGTAGCAATGGTGTTGGCTCGAACGCGGGG
AGCTCGCGCGCCCGCCGACGGCCCAGGAGCGGCGCCGCCACCAAAGCCGC
AGGAGGAAGCGGGGGGGGCGGGCTGCTACTGGCCCCGCCCCCGCTCCCGG
GGGCCACGTACAAGGGCGCCGCGGTGGCCGGGTCGGGTGCCGATTCCGGT
GCCGGTTCGACCTCCCCGCCTACGCCAGGGGGCTCCGCAGCTGAGGCGAC
GCCGTCCGTTGTTTCGCCTGAAGCCGAGGCGACAGTTTCATCGGCGGTGG
AAGATAATAATATCGCGCCGCCAGCGGCGACGTCGCCGGCTTCGGGGGAG
CCGCCAGATGAGGGTCCCAAGGCGGTAGACGCCGGGATCGGGGTTGGGGA
AAAAAGTAGCAATGGT
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