mRNA_C-linearis_contig11.1176.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: D8LKL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL3_ECTSI) HSP 1 Score: 640 bits (1650), Expect = 9.920e-225 Identity = 367/478 (76.78%), Postives = 382/478 (79.92%), Query Frame = 1
Query: 49 MSSQPAPSDIVREAAEQDSKASVETWGAEAFARRTRTKIHNFGAPLPPWENKEQRPTPAARGIPKSINIILLGPTGSGKSSLVYTWWRALSGSVTGKEEFLAEHVHDSFLQRLRVGWNAKDGEEARKRADL----------LATGASSAAPPTLAAEGGKALAAAPRHGTQGLDAFQLQAPDPSRGCTGITVHDTKGQQFFTEEEERFAEKMLQGKVEKGSAPDKQNYKYWFMLGNFGFFSTASLAAAPHVVVLVFDVTLRSFQQMLRERAANELCLCYRKIVRRAAKQGHEVFAVLTHIDAYAPNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTLER-----------------GSESDREAELPGIIALWREELSQALGNDPKAPLPKDNILAVQNYHQGSSAQNPVLDLASLECLESVLHAGSRYVDDRYQQQQEGCVI 1401
MSS PAPSDIVR+AAE+DSKAS+ETWG EAFARRTRTKIHN GAPLPPWE+KEQRPTPAARGIPKSINIILLGPTGSGKSSLVYTWWRALSGSVTGKEEFLAEHVHDSFLQRLRVGWNAK+GEEAR+RA LATGASS APPT A GG L AAPRHGT+GLDAFQLQAPDP RGCTGITVHDTKGQQFFTEEEERFAE+MLQGKVE+GSA DKQNYKYWFMLGNFGFFSTASLAAAPHVVVLVFDVTLRSFQQMLRE ANELC CYRKIVRRAAKQGHEVFAVLTHIDAYAP+ D XXX XXXXXXXXXXXXXXXXXXXX E DREAELPGII+LW E LSQALGNDP+APLPK+N+ AVQNYHQGSSAQ+PVLDLA LECLESVLHAG RYVDDRYQQQQEGCVI
Sbjct: 1 MSSTPAPSDIVRKAAEEDSKASLETWGPEAFARRTRTKIHNLGAPLPPWESKEQRPTPAARGIPKSINIILLGPTGSGKSSLVYTWWRALSGSVTGKEEFLAEHVHDSFLQRLRVGWNAKEGEEARQRAQXXXXXXXXXPALATGASSVAPPT-APGGGALLKAAPRHGTKGLDAFQLQAPDPHRGCTGITVHDTKGQQFFTEEEERFAEQMLQGKVEEGSAVDKQNYKYWFMLGNFGFFSTASLAAAPHVVVLVFDVTLRSFQQMLREPEANELCRCYRKIVRRAAKQGHEVFAVLTHIDAYAPDEDDESTSSDWEEEEEGTEADTEAETATXXXSLEQSAEASPGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGEFDREAELPGIISLWCEGLSQALGNDPEAPLPKENVFAVQNYHQGSSAQDPVLDLACLECLESVLHAGGRYVDDRYQQQQEGCVI 477
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: A0A7R9U7I7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7I7_9STRA) HSP 1 Score: 242 bits (617), Expect = 6.890e-71 Identity = 155/431 (35.96%), Postives = 208/431 (48.26%), Query Frame = 1
Query: 115 VETWGAEAFARRTRTKIHNFGAPLPPWENKEQRPTPAARGIPKSINIILLGPTGSGKSSLVYTWWRALSGSVTGKEE--FLAEHVHDSFLQRLRVGWNAKDGEEARKRADLLATGASSAAPPTLAAEGGKALAAAPRHGTQGLDAFQLQAPDPSRGCTGITVHDTKGQQFFTEEEERFAEKMLQGKVEKGSAPDKQNYKYWFMLGNFGFFSTASLAAAPHVVVLVFDVTLRSFQQMLRERAA-----NELCLCYRKIVRRAAKQGHEVFAVLTHIDAYAPNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTLERGSESDREAEL-----PGIIALWREELSQALGNDPKAPLPKDNILAVQNYHQGSSAQNPVLDLASLECLESVLHAGSRYVDDR 1371
VE WG EAFA+R R ++ + LPP + + +P+ N++LLGPTG+GKSSLVYTWWRAL+G+ ++ FL H S L+RL++GW A+ + R L+AAPRHGT L AF+LQA S C I +HDTKGQQFFTEEEE FA ML+GKV GS PD +++YW +G FG F T +LA+APH +VLVFD TL+SFQ +L + A NEL CYRK+V RA +G VFAVL+H+D G T G + D EL ++ ++E LS AL D A +P I V+NY Q+ +D +LE L++ + + Y+ R
Sbjct: 18 VEAWGPEAFAKRLRARLKSAQVQLPPELERSD-----SSELPRGFNVLLLGPTGAGKSSLVYTWWRALAGTQAREDRASFLKNFAHHSLLRRLQLGWTAESEDAGRS----------------------DQLSAAPRHGTTALTAFELQAA--SDACGHIQIHDTKGQQFFTEEEESFANDMLEGKVLPGSTPDAVHWRYWISIGQFGLFVTTNLASAPHALVLVFDSTLKSFQTVLADAKAGEADDNELAACYRKVVSRARAEGQPVFAVLSHVDQLQVRG---------------------------------------------------------------TPAEGEDVDELEELLIGSRDEVLERFKELLSAAL-KDEDAAVPVHQIYCVENYRMDRFEQDAEIDFRALEALDAAVGGANTYIAKR 355
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: A0A835Z504_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z504_9STRA) HSP 1 Score: 217 bits (552), Expect = 5.260e-59 Identity = 147/398 (36.93%), Postives = 196/398 (49.25%), Query Frame = 1
Query: 271 TGSGKSSLVYTWWRALSGSVTGKEEFLAEHVHDSFLQRLRVGWNAKDGEEARKRADLLATGASSAAPPTLAAEGGKALAAAPRHGTQGLDAFQLQAPDPSRGCTGITVHDTKGQQFFTEEEERFAEKMLQGKVEKGSAPDKQNYKYWFMLGNFGFFSTASLAAAPHVVVLVFDVTLRSFQQMLR--------------ERAANELCLCYRKIVRRAAKQGHEVFAVLTHIDAYAPNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTLERGSESDREAELPGIIALWREELSQAL---GNDPKAP---LPKDNILAVQNYHQGSSAQNPVLDLASLECLESVLHAGSRYVDDRYQQQQEGCVIT 1404
T S K L+YTWWRALSG + F A H + +L +GW D AD A+ PP++ L AA RHGT L+AF+L+ PS G GI VHDTKGQQFFT EEERFAE +L+GK+ GS + +NY+YWFMLG FG +SLA+APH VVLVFDVTLRSF+ MLR ++ L CYR ++RRA + G EVFA LTH+DAY P+ + +RE ++P +I W+ EL +AL N PK+ L ++ A++NY SA++ +DLA+LE LESV+ AG ++ R Q GC+++
Sbjct: 269 TQSFKPCLIYTWWRALSGD----KGFEATAAHADLMGKLNLGWELGDV------ADSDDPKATHVVPPSV-------LEAAARHGTTRLEAFELRPAGPS-GVAGIAVHDTKGQQFFTHEEERFAEHLLEGKLLPGSTAESRNYRYWFMLGQFGIGPISSLASAPHAVVLVFDVTLRSFEAMLRTCGCDTANGSGQQPQQQPPALVRCYRSVLRRARQYGLEVFAALTHVDAYEPDEELDSDSDSDATTPKNVQDNGPPPMTF---------------------------------------------NRERDMPALIERWQHELCRALCGSHNPPKSGPGFLVPQHVFAMENYRASKSARDTGIDLAALEFLESVVAAGHTFISSRCNQPA-GCIVS 602
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: A0A812RI62_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RI62_SYMMI) HSP 1 Score: 144 bits (362), Expect = 9.750e-36 Identity = 88/241 (36.51%), Postives = 137/241 (56.85%), Query Frame = 1
Query: 235 IPKSINIILLGPTGSGKSSLVYTWWRALSGSVTGKEEFLAEHVHDSFL--QRLRVGWNAKDGEEARKRADLLATGASSAAPPTLAAEGGKALAAAPRHGTQGLDAFQLQAPDPSRGCTGITVHDTKGQQFFTEEEERFAEKMLQGKVEKGSAPDKQNYKYWFMLGNFGFFSTASLAAAPHVVVLVFDVTLRSFQQMLR--------ERAANELCLCYRKIVRRAAKQGHEVFAVLTHIDAY 927
+P NI LLGPTG+GKSSLVYT WRA++ + EH D + + L+VGW D + A +D G + P TL A+ +HGT+ L + +Q P + I + DTKGQQFF E+E +A+ ++ G +++GS+ ++QN +YW +G+ GFF +++L PHV++LVFD +L+S ++L E +L CY +++ RA ++ +VF LTHID +
Sbjct: 5 LPPGWNIALLGPTGAGKSSLVYTLWRAINA--------IDEHHPDVAMKVEALQVGWTKADSDTASS-SDSGNGGDMPSTPSTLQAKA--------QHGTRILSSVIIQEESPEH--SQIRIQDTKGQQFFDEKEASYADAIVSGVLKEGSSVEEQNLRYWITIGSLGFFESSNLHDTPHVILLVFDASLKSLHKVLNVDFSDHEWENKVPQLA-CYHRVLDRAKEKELDVFVCLTHIDVF 225
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: A0A7S2STS1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STS1_9STRA) HSP 1 Score: 147 bits (370), Expect = 9.190e-35 Identity = 113/301 (37.54%), Postives = 151/301 (50.17%), Query Frame = 1
Query: 115 VETWGAEAFARRTRTKIHNFGAPLPPWENKEQRPTPAARGIPKSINIILLGPTGSGKSSLVYTWWRAL----SGSVTGKEEFLAEHVHDSFLQRLRVGWNAKDGEEARKRADLLATGASSAAPPTLAAEG--------------GKALAAAPRHGTQGLDAFQLQAPDPSRGC-TGITVHDTKGQQFFTEEEERFAEKMLQGKVEKGSAPDKQNYKYWFMLGNFGFFSTASLAAAPHVVVLVFDVTLRSFQQMLRE-RAANELCLC----------YRKIVRRAAKQGHEVFAVLTHIDAY 927
+E WGA AFAR R ++ L E Q T P N+++LGP GSGKSSL+YT WRAL SG+ T E + S + + +D A A G SS+ L AE G +L A RHGT+GL + PD GC GI+VHDTKGQQFF + E R A +L G +GS +++N +YWF +GN GFF +L A+PHVV+LVFDV LRS ++M+ R A+E Y +VR+A ++G V TH+D +
Sbjct: 50 MEVWGAPAFARAIRGRL--VARQLCDGEGLPQG-TSTRLPSPPRWNLLVLGPAGSGKSSLIYTLWRALHHHESGTRTQSEALGGQDPEASTGGESQ---SPEDSSPCLGSAHQPADGPSSSVADDLPAEDKMAVELSLGWEAPTGTSLRA--RHGTKGLRVVDILEPD---GCHAGISVHDTKGQQFFDDAEGRHAGHLLHGTALEGSNQEQENLRYWFFIGNMGFFEKRTLDASPHVVLLVFDVMLRSTRRMIAAVRRASEHSASASANSPQFDLYCAVVRQAQREGLAVHVAFTHLDVF 339
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: A0A6H5K4Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q7_9PHAE) HSP 1 Score: 117 bits (293), Expect = 6.620e-28 Identity = 63/91 (69.23%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 493 GKALAAAPRHGTQGLDAFQLQAPDPSRGCTGITVHDTKGQQFFTEEEER--------------------FAEKMLQGKVEKGSAPDKQNYK 705
G L AAPRHGT+GLDAFQLQAPDP RGCTGITVHDTKGQQFFTEEEER FAE+MLQGKVE+GSA DKQNYK
Sbjct: 5 GALLKAAPRHGTKGLDAFQLQAPDPHRGCTGITVHDTKGQQFFTEEEERCGATALFGGMVGKVGMLHNGFAEQMLQGKVEEGSAVDKQNYK 95
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: A0A7S2UWS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWS0_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 9.620e-18 Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 673 KGSAPDKQNYKYWFMLGNFGFFSTASLAAAPHVVVLVFDVTLRSFQQMLRERAANELCLCYRKIVRRAAKQGHEVFAVLTHIDAY 927
+GS D++N++YWF LG GFF SL +PHVVVLVF+ TLRS ++M +A++ CYR+++ +A +G EVF LTH+D +
Sbjct: 4 EGSTLDRENFRYWFTLGQLGFFVRTSLDTSPHVVVLVFNATLRSVKKMADGQASSAQLKCYRRVISQAQSKGLEVFIALTHLDLW 88
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: A0A1R2AUX5_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AUX5_9CILI) HSP 1 Score: 62.8 bits (151), Expect = 5.930e-7 Identity = 61/241 (25.31%), Postives = 103/241 (42.74%), Query Frame = 1
Query: 235 IPKSINIILLGPTGSGKSSLVYTWWRALSGSVTGKEEFLAEHVHDSFLQRLRVGWNAKDGEEARKRADLLATGASSAAPPTLAAEGGKALAAAPRHGTQGLDAFQLQAPDPSRGCTGITVHDTKGQQFFTEEEERFAEKMLQGKVEKGSAPDKQNYKYWFMLGNFG-----FFSTA------SLAAAPHVVVLVFDVTLRSFQQMLRERAANELCLCYRKIVRRAAKQGHEV-FAVLTHID 921
+P ++NI+L GP+GSGKSSL+ T++R+ + L + +H + + G + L T + P +G + GI +HDT+GQ + +E+ A+ +LQGKV+ S +++N++Y ++L F F T L PH ++ +FD +L E A Y +I++ A +G+ VLTHID
Sbjct: 58 LPNAVNILLFGPSGSGKSSLLRTFYRSYHNTRE-----LPDEIHHKLVVK---------GTSHNEGTTLYTT-----------------VVIKPENGNE----------------NGIRIHDTRGQIWMDVKEKAQADLLLQGKVKDLSKVEQRNHRYAYLLWEFWKKDTQLFPTEILKNSPGLTDKPHCLLFIFDGSLEDIPNGDEETAF------YHEILQLAKSKGYYYPQIVLTHID 245
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Match: Q22Y47_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22Y47_TETTS) HSP 1 Score: 61.6 bits (148), Expect = 2.050e-6 Identity = 54/204 (26.47%), Postives = 95/204 (46.57%), Query Frame = 1
Query: 235 IPKSINIILLGPTGSGKSSLVYTWWRALS--GSVTG--KEEFLAEHVHDSFLQRLRVGWNAKDGEEARKRADLLATGASSAAPPTLAAEGGKALAAAPRHGTQGLDAFQLQAPDPSRGCTGITVHDTKGQQFFTEEEERFAEKMLQGKVEKGSAPDKQNYKYWFMLGNFGFFSTA------------SLAAAPHVVVLVFDVTL 798
+PK +NIIL GPTGSGKSSL+ T+++AL+ G + K++F+ + +H + + K G+ L+ TG S+ F ++ + I DT+GQ F +E+E + +++GK++ S +++++Y ++L F S+ SL PH V++VFD +L
Sbjct: 103 LPKQLNIILFGPTGSGKSSLIKTFYQALNEEGDLPPEIKKDFVIQTLHHNEGTKKLTSIPIKKGKH-----QLIETGNST---------------------------FTIEN-------SSINCLDTRGQIFLSEQEMQQFNIIIEGKIKNMSVVQQRSFRYAYLLWEFWKKSSELFPDDILEENQQSLQNLPHCVIIVFDGSL 267 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1176.1 >prot_C-linearis_contig11.1176.1 ID=prot_C-linearis_contig11.1176.1|Name=mRNA_C-linearis_contig11.1176.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=453bp MSSQPAPSDIVREAAEQDSKASVETWGAEAFARRTRTKIHNFGAPLPPWEback to top mRNA from alignment at C-linearis_contig11:525392..532978- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1176.1 ID=mRNA_C-linearis_contig11.1176.1|Name=mRNA_C-linearis_contig11.1176.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7587bp|location=Sequence derived from alignment at C-linearis_contig11:525392..532978- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:525392..532978- >mRNA_C-linearis_contig11.1176.1 ID=mRNA_C-linearis_contig11.1176.1|Name=mRNA_C-linearis_contig11.1176.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2718bp|location=Sequence derived from alignment at C-linearis_contig11:525392..532978- (Chordaria linearis ClinC8C monoicous)back to top |