mRNA_C-linearis_contig11.1166.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1166.1
Unique NamemRNA_C-linearis_contig11.1166.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1166.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.890e-30
Identity = 81/186 (43.55%), Postives = 101/186 (54.30%), Query Frame = 3 
Query:  891 SERKVLRNTPRVPQGTPAWDSAGVVVGNRDRATNCGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCERETC-FPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVSHREADRVLRVKR--------SSSTASKKNRWAAVCRQGVKGSHLRVGTKRE 1421
            S R+ L+  PR   GTP W++    VG RD             D                    VV D+DV    M WA +FCE +   FP+ +S EG+ LG+ L +HV RDGD GLVGT PPTLLVHGLCIRV H E++RVLRVKR          +    ++ WA+V RQGVKG  LR+GTK+E
Sbjct: 1084 SGRECLQGFPR---GTPVWENHCGRVGGRDEGXXXXXXXXXXXD--------------------VVDDEDVAGGAMGWARKFCESDDGRFPSDESGEGISLGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHAESNRVLRVKRHPPASGHGEDNAERHEDEWASVARQGVKGCRLRIGTKKE 1246
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BLAST of mRNA_C-linearis_contig11.1166.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.670e-29
Identity = 81/186 (43.55%), Postives = 103/186 (55.38%), Query Frame = 3 
Query:  891 SERKVLRNTPRVPQGTPAWDSAGVVVGNRDRATNCGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCERETC-FPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVSHREADRVLRVKR--------SSSTASKKNRWAAVCRQGVKGSHLRVGTKRE 1421
            S R+ L+  PR   GTP W++    VG RD  +             GG RV G           +V D+D     M WA +F   +   FP+ +S EG+ LG+ L +HV RDGD GL+GT PPTLLVHGLCIRV H E++RVLRVKR          +    ++ WAAV RQGV+G  LR+GTKRE
Sbjct: 1109 SGRECLQGFPR---GTPVWENHCGRVGGRDEGS-------------GGRRVDG--------ANDIVGDEDAAGGAMGWARKFFGVDDGRFPSDESGEGIALGKVLAKHVVRDGDVGLIGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPASGHGEDNAKRHQDEWAAVARQGVQGCRLRIGTKRE 1270
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI1.890e-3043.55Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE2.670e-2943.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:426809..429127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1421
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1166.1prot_C-linearis_contig11.1166.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 426969..428336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.3324473-UTR-C-linearis_contig11:426808..4269681622927425.3324473-UTR-C-linearis_contig11:426808..426968Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 426809..426968 +
1690879693.1465032-UTR-C-linearis_contig11:426808..4269681690879693.1465032-UTR-C-linearis_contig11:426808..426968Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 426809..426968 +
1622927425.3687522-UTR-C-linearis_contig11:428336..4286031622927425.3687522-UTR-C-linearis_contig11:428336..428603Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 428337..428603 +
1690879693.1766603-UTR-C-linearis_contig11:428336..4286031690879693.1766603-UTR-C-linearis_contig11:428336..428603Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 428337..428603 +
1622927425.3808734-UTR-C-linearis_contig11:428955..4291271622927425.3808734-UTR-C-linearis_contig11:428955..429127Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 428956..429127 +
1690879693.1850991-UTR-C-linearis_contig11:428955..4291271690879693.1850991-UTR-C-linearis_contig11:428955..429127Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 428956..429127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.3455093-CDS-C-linearis_contig11:426968..4270051622927425.3455093-CDS-C-linearis_contig11:426968..427005Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 426969..427005 +
1690879693.1553721-CDS-C-linearis_contig11:426968..4270051690879693.1553721-CDS-C-linearis_contig11:426968..427005Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 426969..427005 +
1622927425.3570275-CDS-C-linearis_contig11:427551..4283361622927425.3570275-CDS-C-linearis_contig11:427551..428336Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 427552..428336 +
1690879693.1693418-CDS-C-linearis_contig11:427551..4283361690879693.1693418-CDS-C-linearis_contig11:427551..428336Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 427552..428336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1166.1

>prot_C-linearis_contig11.1166.1 ID=prot_C-linearis_contig11.1166.1|Name=mRNA_C-linearis_contig11.1166.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=274bp
MFRAARAEKKRKEILGTSMRRYRMGGALAAFQKAAPRSPTSTVSAVAKLH
AITSKATASNNTNTATTAAPQALGANQHMASSDKETAAPAEGSAVGARFS
SMGGSNPSQIAAASNAAANSGHIPNDASAAASPGAAEAGAATTTTASAAP
NRKPNALGSRGRFSTMNRVVQSFPGNGNGRGERLQASAPNRAAASAAAGA
AANSSGEQQQAAGAGQPQELTPTQAAVLAADNKLERLLNVGGILRAKSVE
EYPTGSAGHAGMGQCWGSGGQSR*
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mRNA from alignment at C-linearis_contig11:426809..429127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1166.1 ID=mRNA_C-linearis_contig11.1166.1|Name=mRNA_C-linearis_contig11.1166.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2319bp|location=Sequence derived from alignment at C-linearis_contig11:426809..429127+ (Chordaria linearis ClinC8C monoicous)
CTCGGCAGGGTGTGCGCGTCTGCACGTGTTGTGACTCACCGGCGCGCTCG
CTATTGTCGTCGTGTCGTTCGTCGACCTCATACGCCTGCTGCGGGTGAAA
GGGAGGGGCGACAAGAGGCAAGCTAAGTTGCTGGTGCTGTTGCTGAGAGT
CAAAAACTCCATGTTCCGCGCTGCTCGTGCCGAAAAGAAACGGAAAGGTG
AGGGGGAGTTGATGCAGTAGAGGAGCTCGGACGTCATGTATAGGTCGTTT
GGCGTCGACTTATTTTCGCGCCACTGATATTTTGCATCATGAACGCAAGT
ACCTGGTAGACGATTGGGGTTGAGGTTGGGAGGATTTGCTCCGAGCACCA
AACAAACAAAACGAAACTGGGCTACGAACCTGGACATGAAATCCCGTCTT
CGTCTCTCCCGGCCGGGTGCAGCAGACCAAGAGCAACTACTTCGAAACGA
GCTCTCCACTTGCTTTTCTTCTAGCGCTGTTTGTTCCGGGATATTGGTGG
CTTGAATGCAGCCCTGTCATCAGGGTTGACATAAACGATAGCATCGTACT
TGCCAATACAGAGTCTAAATATATTGACACGCAGTACATCTCAACATATG
CGCGACACCACAATGTTGAATCTGGTAGGTAGCCATCAACGAGCGCAATC
ACCCTGCTAGTGGACTGACCTCAACCCCCCTTCCTGAAAGCGCCCGCCAA
CATTCATTGCGCTCTCTCTTCGTTCCGCCCGCTCTCAACAAAGAAATACT
CGGCACAAGCATGCGTCGATACCGCATGGGCGGCGCGTTGGCTGCTTTCC
AGAAGGCCGCCCCCCGGAGCCCGACGTCGACGGTATCTGCAGTAGCAAAG
CTCCACGCAATAACTTCGAAAGCCACGGCATCAAACAACACCAACACCGC
TACTACTGCGGCGCCTCAAGCCTTGGGTGCAAATCAGCACATGGCGTCGT
CGGATAAGGAGACGGCGGCACCTGCCGAGGGTTCCGCTGTGGGTGCAAGG
TTCTCATCTATGGGTGGAAGCAACCCGAGCCAAATCGCGGCCGCAAGCAA
CGCTGCTGCTAACTCCGGTCACATCCCGAACGACGCCAGCGCTGCAGCAT
CGCCGGGAGCAGCAGAAGCAGGCGCAGCCACCACCACCACCGCCTCCGCT
GCGCCCAACCGGAAGCCAAACGCGCTCGGGTCGAGGGGGAGGTTCTCGAC
CATGAACCGCGTCGTCCAATCCTTCCCGGGAAACGGGAACGGCCGTGGAG
AACGTCTGCAAGCCAGCGCTCCAAATCGTGCTGCCGCTAGTGCCGCAGCT
GGTGCGGCAGCCAACAGTTCCGGGGAGCAGCAGCAGGCCGCGGGAGCGGG
ACAGCCGCAGGAACTAACGCCCACGCAAGCGGCTGTGCTCGCGGCGGACA
ACAAGCTGGAAAGGCTGTTGAACGTGGGAGGAATTCTCCGAGCGAAAAGT
GTTGAGGAATACCCCACGGGTTCCGCAGGGCACGCCGGCATGGGACAGTG
CTGGGGTAGTGGTGGGCAATCGAGATAGAGCAACAAACTGTGGCAGAAGT
GAGGGCGATAGACTTGATCTTGGCGGTGGCATTCGCGTGAGTGGCGGTGG
GCGTGATCGTGGTCGTGAAATTGGTGCTGTCGTTGCCGACGACGATGTAG
GGAAAGTTGTGATGGAATGGGCGAGCCGGTTTTGCGAACGCGAAACCTGT
TTCCCCGCTGCCGACAGCGAGGAAGGTGTTCGGCTGGGCAGGGCGCTGGT
GAGGCACGTCGCACGCGATGGGGACGCGGGGCTGGTAGGGACCAGGTGGG
AAATGAGAATGAAACCCTCTTAACCTCTACGTCATCATCCTACTACATGC
CGGACCACTGATCCTTGACTTCACTCCCACGTTTCGACGTGCATCCGCCT
AATTATGAACTCGGAAAACACGTTCTCGAATGGCAGAAAAACGAAAAATT
GAGAACGCCGACAATTTAAGCCGATGCCCTTTCTGTAGTCCTTCTGTTTC
CCAGGTTGTGTGCGGATGCGTAGGATGCCCTTCTTGATGATGGCCATAAC
AACAGCGTCATCAGCACACGTCGAATTGCTCACTCTTAACTAACGCCTAC
AGTACGTACCTGCATTCCTGAACGAATTAACTTCATACCCCACACAGGCC
GCCGACGCTGCTTGTGCACGGTTTGTGTATCCGCGTCAGTCACCGGGAGG
CTGATCGCGTTCTGAGGGTCAAGCGAAGTAGTAGTACCGCCAGTAAGAAG
AATCGGTGGGCTGCAGTATGTCGGCAAGGGGTGAAGGGATCCCATCTGCG
GGTTGGAACGAAGAGAGAG
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Coding sequence (CDS) from alignment at C-linearis_contig11:426809..429127+

>mRNA_C-linearis_contig11.1166.1 ID=mRNA_C-linearis_contig11.1166.1|Name=mRNA_C-linearis_contig11.1166.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at C-linearis_contig11:426809..429127+ (Chordaria linearis ClinC8C monoicous)
ATGTTCCGCGCTGCTCGTGCCGAAAAGAAACGGAAAGATGTTCCGCGCTG
CTCGTGCCGAAAAGAAACGGAAAGAAATACTCGGCACAAGCATGCGTCGA
TACCGCATGGGCGGCGCGTTGGCTGCTTTCCAGAAGGCCGCCCCCCGGAG
CCCGACGTCGACGGTATCTGCAGTAGCAAAGCTCCACGCAATAACTTCGA
AAGCCACGGCATCAAACAACACCAACACCGCTACTACTGCGGCGCCTCAA
GCCTTGGGTGCAAATCAGCACATGGCGTCGTCGGATAAGGAGACGGCGGC
ACCTGCCGAGGGTTCCGCTGTGGGTGCAAGGTTCTCATCTATGGGTGGAA
GCAACCCGAGCCAAATCGCGGCCGCAAGCAACGCTGCTGCTAACTCCGGT
CACATCCCGAACGACGCCAGCGCTGCAGCATCGCCGGGAGCAGCAGAAGC
AGGCGCAGCCACCACCACCACCGCCTCCGCTGCGCCCAACCGGAAGCCAA
ACGCGCTCGGGTCGAGGGGGAGGTTCTCGACCATGAACCGCGTCGTCCAA
TCCTTCCCGGGAAACGGGAACGGCCGTGGAGAACGTCTGCAAGCCAGCGC
TCCAAATCGTGCTGCCGCTAGTGCCGCAGCTGGTGCGGCAGCCAACAGTT
CCGGGGAGCAGCAGCAGGCCGCGGGAGCGGGACAGCCGCAGGAACTAACG
CCCACGCAAGCGGCTGTGCTCGCGGCGGACAACAAGCTGGAAAGGCTGTT
GAACGTGGGAGGAATTCTCCGAGCGAAAAGTGTTGAGGAATACCCCACGG
GTTCCGCAGGGCACGCCGGCATGGGACAGTGCTGGGGTAGTGGTGGGCAA
TCGAGATAGAAATACTCGGCACAAGCATGCGTCGATACCGCATGGGCGGC
GCGTTGGCTGCTTTCCAGAAGGCCGCCCCCCGGAGCCCGACGTCGACGGT
ATCTGCAGTAGCAAAGCTCCACGCAATAACTTCGAAAGCCACGGCATCAA
ACAACACCAACACCGCTACTACTGCGGCGCCTCAAGCCTTGGGTGCAAAT
CAGCACATGGCGTCGTCGGATAAGGAGACGGCGGCACCTGCCGAGGGTTC
CGCTGTGGGTGCAAGGTTCTCATCTATGGGTGGAAGCAACCCGAGCCAAA
TCGCGGCCGCAAGCAACGCTGCTGCTAACTCCGGTCACATCCCGAACGAC
GCCAGCGCTGCAGCATCGCCGGGAGCAGCAGAAGCAGGCGCAGCCACCAC
CACCACCGCCTCCGCTGCGCCCAACCGGAAGCCAAACGCGCTCGGGTCGA
GGGGGAGGTTCTCGACCATGAACCGCGTCGTCCAATCCTTCCCGGGAAAC
GGGAACGGCCGTGGAGAACGTCTGCAAGCCAGCGCTCCAAATCGTGCTGC
CGCTAGTGCCGCAGCTGGTGCGGCAGCCAACAGTTCCGGGGAGCAGCAGC
AGGCCGCGGGAGCGGGACAGCCGCAGGAACTAACGCCCACGCAAGCGGCT
GTGCTCGCGGCGGACAACAAGCTGGAAAGGCTGTTGAACGTGGGAGGAAT
TCTCCGAGCGAAAAGTGTTGAGGAATACCCCACGGGTTCCGCAGGGCACG
CCGGCATGGGACAGTGCTGGGGTAGTGGTGGGCAATCGAGATAG
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