mRNA_C-linearis_contig11.1165.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig11.1165.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI) HSP 1 Score: 1048 bits (2711), Expect = 0.000e+0 Identity = 741/1408 (52.63%), Postives = 886/1408 (62.93%), Query Frame = 1
Query: 136 RPRSTPIALPSDQRKLMPIGNIPELSLGMATSGTALSPVRRDTWTAG-AGCLGSRRLCFRSQPIHDLVSSTLLSIDPSGVFSMYEEWSNIKNRILSRGLDEQRSDLALYEELRREDDDSWISEDGAYANDTAEDGLPGASADPALQD----------SPPTGIEAGARAGVERDLPPAAGDGGCGTPARRXXXXXXEPRPSSREERAANLDYARNLDKKEPCLLPLRLLRESSEGALRLGHMALGDPYVMALLASLDHLPSLTSIDVSDNRIGSAAIQKVVLTAEEKGVTSLDLSSNHVDLASTDMLCAFLAHRPGILSSLIVKNAGVSNLAGAAIMAAIGKNTTLKTLDLSGNDIGGTSDLLATHHHEQGSIALS-----SGGGGMVGEKAGGVRAGATGRLTGGVPIATCLESNYWLTHLDLSWNKIGESNAATIGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIKNIQADLLTLTSQIPANELWHKKSFLRRATGQVAASRRYIELERPSPSAPALQPRGT-TTAAEGSNHSTLD-HAAFGERTWSDLRTTMEELLVRPPGDSEPWRLPPTGRLSGTVEFQPLPPCTANMCNASGMRGIVEAMSACAATRVAAFRLFVADLFFTTNQIQWLIGHLAESTNPFNSAELLEMMTAVAPQVYNNNGLPDLIETNLSPMGRRMLVAQLGEAYPAFTGGVSGPFVLDLRFPAYRLAAVRLAEAETFQ------------ELKKTIAEMRRXXXXXXXXXXXXXXXXXXXXXXXXRGAGGRAAGISDRPTGALQLDFVCTLRPPEGTQPISDLALARMLNSCGMLDPNFWYEYLRPTSFPVSFVDLIRLLRVKGRGDKRQAKLLVLLLRVKNSMFRAARAEKKRKEILGTSMRRYRMGGALAAFQKAAPRSPTSTVSAVAKLHAITSKATASNNTNTATTAAPQALGANQHMASSDKETAAPAEGSAVGARFSSMGGSNPSQIAAASNAAANSERLQASAPNRXXXXXXXXXXXXXXXXXXXAAGAGQPQELTPTQAAVLAADNKLERLLNVGGILRAK-SVEEYPHGFPQGTPAWDTTNCGRSEGDRLDLGGGIRVSGGGRDRGREIGA-------VVADDDVGKVVMEWASRFCERETC-FPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVSHREADRVLRVKR--------SSSTASKKNRWAAVCRQGVKGSHLRVGTKREVTSALEATFASRVQQRDW-----TGSVTPRTLGTLNMTEDKDWRKTFVPTELLACDALGGSLPLRLLVRVVNTSFEPDLCRSLAQLRSRLGSCWLSSAQAATVASLVPRVIGGRHYGVDAVVFLFSRVVDLKNFRQ 4203
RPRSTP+ LPS++ G+ E +L RRD TA A CLG RRLCFRS+PIHDL +TL +IDP+G++ MY+EWSNIKNR+LSRG EQRSDLALY+ LR+E +D S D ND + D AS ++++ SPP EA +PP G G ARR + E AANLDYARNL K EP L PLRLLRESSEGALRL HMALGD +VMAL++SLDHLP LTSID++DNRIGS A++ V+ AE KGV LDLS NHVD S +LC +L G++S L+VK+ G+S LA AAIM A+ NTTLKTL+LSGN++GGTSDL+A+ G GG VG RLTGG +A L+SN LT+LDLSWNKIGE NAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IKN Q L T ANE H+ F + AT Q AA +R ++L RPSP A LQPRG AAEG D F R++SD +TT+ L VR G+ E W LP GRL+G VEF PLPPC A++CNA+G+RG++ AM+ C TRV FRLFVADLF TTNQ+QWLI LA N NSAE+L+MM AV+PQ+++N GLPDLIE NLSPMGR+ML QLG+AYPAFTGGVSGPF+LDLRF +RLAAVRLAEAE FQ + KT ++ RR G A+G+ D+PTG L+L+FVC RPPEGTQPISD LAR+LNSCGMLDP++W EY+RPTSFPVSFVDLIRLLRVKGRGDKRQAK+LVLLLRVKNSM RAAR + R+ + G RYR+GGA +A + +PT + V+ AT+ + TAT A A A H D +P G A G + GG +P + S S R A++ +ELTP QAAVLA D +L+ LL GGILR S E GFP+GTP W+ +CGR GGRD G VV D+DV M WA +FCE + FP+ +S EG+ LG+ L +HV RDGD GLVGT PPTLLVHGLCIRV H E++RVLRVKR + ++ WA+V RQGVKG LR+GTK+EV SAL ATFA +Q + + + TPRTLGTL+MT DK WR+ FVP ELL A+ + PL+L + VVNTS EP+L +SLAQLR RLG WLSSAQAATVA++VPRV+GG HY VD VFLFSRVVDL+N+RQ
Sbjct: 46 RPRSTPLPLPSNRGNFFSSGS-EEYTLS----------ARRDVRTADDANCLGHRRLCFRSEPIHDLHVATLKTIDPTGIYGMYQEWSNIKNRVLSRGFAEQRSDLALYDRLRKEAEDDKASSD----NDASIDNAVVASGTNSMEEAYRTRSPSSVSPPPAAEA---IDENESIPPEVVRDGNGIAARRRRRRLKDAHSFEPEGHAANLDYARNLHK-EPGLPPLRLLRESSEGALRLAHMALGDRHVMALMSSLDHLPGLTSIDIADNRIGSTAMRTVLAIAEAKGVLHLDLSLNHVDRVSAGLLCKYLTRSSGLVS-LLVKSCGMSALASAAIMVAVATNTTLKTLNLSGNNMGGTSDLIASXXXXXXXXXXXXXXXVGGSGGEVG---------GADRLTGGASVALALDSNNSLTYLDLSWNKIGEINAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKNFQVGLSTSIYSTLANEPRHRIYFSQGATSQGAALQRNLQLVRPSPDAAVLQPRGIIVNAAEGEGSLQGDVPLEFCARSYSDQQTTLAALSVRVHGEHEAWPLPTKGRLTGLVEFIPLPPCMASVCNATGLRGLLAAMNGCFDTRVEVFRLFVADLFMTTNQVQWLIEQLAGGPNVLNSAEMLKMMAAVSPQLFDNTGLPDLIERNLSPMGRKMLEVQLGQAYPAFTGGVSGPFLLDLRFSRHRLAAVRLAEAENFQTRATVWRHRERTKESKTRSKARRRVLIEERVARSMCYTSC---------GNGVASGLRDKPTGVLELEFVCLSRPPEGTQPISDRRLARLLNSCGMLDPHYWSEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRAARVARPRQGLTGMRCVRYRVGGAASAIVGSTRSTPTLASTVVS--------ATSRSPKKTATCA--PAAAATGH----DSSVTSPEVGPASGKGDRADGGVSPPEHLDPSRRDETSVRTAAAS---GAADDSPDKDKHHGSEEQKQVARVTEEELTPVQAAVLAVDKRLKGLLEAGGILRGTTSGRECLQGFPRGTPVWEN-HCGRV---------------GGRDEGXXXXXXXXXXXDVVDDEDVAGGAMGWARKFCESDDGRFPSDESGEGISLGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHAESNRVLRVKRHPPASGHGEDNAERHEDEWASVARQGVKGCRLRIGTKKEVASALAATFAGLTKQPNLASTSTSSAATPRTLGTLDMTTDKGWRELFVPPELLVSTAVTEAGPLQLTLLVVNTSPEPNLSQSLAQLRVRLGGSWLSSAQAATVAAVVPRVLGGVHYRVDVAVFLFSRVVDLENYRQ 1382
BLAST of mRNA_C-linearis_contig11.1165.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE) HSP 1 Score: 587 bits (1512), Expect = 1.260e-180 Identity = 539/1619 (33.29%), Postives = 682/1619 (42.12%), Query Frame = 1
Query: 1 DTFFVTGGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSNGRPRSTPIALPSDQRKLMPIGNIPELSLGMATSGTALSPVRRDTWTAG-AGCLGSRRLCFRSQPIHDLVSSTLLSIDPSGVFSMYEEWSNIKNRILSR---GLDEQRSDLALYEELRREDDDSWISEDGAYANDTAEDGLPGASADPALQDSPPTGIEAGARAGVERDLPPAAGDGGCGTPARRXXXXXXEPRPSSREERAANLDYARNLDKKEPCLLPLRLLRESSEGALRLGHMALGDPYVMALLASLDHLPSLTSIDVSDNRIGSAAIQKVVLTAEEKGVTSLDLSSNHVDLASTDMLCAFLAHRPGILSSLIVKNAGVSNLAGAAIMAAIGKNTTLKTLDLSGNDIGGTSDLLATHHHEQGSIALSSGGGGMVGEKAGGVRAGATGRLTGGVPIATCLESNYWLTHLDLSWNK-----------IGESNAATIGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIKNI---------------------------QADLLTLTSQIPANELWHKKSFLRRATGQVAASRRYIELERPSPSAPALQPRG---TTTAAEGSNHSTLDHAAFGERTWSDLRTTMEELLVRPPGDSEPWRLPPTGRLSGTVEFQPLPPCTANMCNASGMRGIVEAMSACAATRVAAFRLFVADLFFTTNQIQWLIGHLAESTNPFNSAELLEMMTAVAPQVYNNNGLPDLIETNLSPMGRRMLVAQLGEAYPAFTGGVSGPFVLDLRFPAYRLAAVRLAEAETFQELKKTIAEMRRXXXXXXXXXXXXXXXXXXXXXXXXRGAGGRAA-------------------------------GISDRPTGALQLDFVCTLRPPEGTQPISDLALARMLNSCGMLDPNFW---------------------------------------------------------------------------------------YEYLRPTSFPVSFVDLIRLLRVKGRGDKRQAKLLVLLLRVKNSMFRAARAEKKRK------------EILG------------------------------------------TSMRR--YRMGGALAAFQKAAPRSPTSTVSAVAKLHAITSKATASNNTNTATTAAPQALGANQHMASSDKETAAPAEGSAVGARFSSMGGSNPSQIAAASNAAANSERLQASAPNRXXXXXXXXXXXXXXXXXXXAAGAGQPQELTPTQAAVLAADNKLERLLNVGGILRAK-SVEEYPHGFPQGTPAWDTTNCGRSEGDRLDLGGGIRVSGGGRDRGREIGAVVADDDVGKVVMEWASRFCERETC-FPAADSEEGVRLGRALVRHVARDGDAGLVGTRPPTLLVHGLCIRVSHREADRVLRVKR--------SSSTASKKNRWAAVCRQGVKGSHLRVGTKREVTSALEATFASRVQQRDWTG-SVTPRTLGTLNMTEDKDWRKTFVPTELLACDALG--GSLPLRLLVRVVNTS--FEPDLCRSLAQLRS--RLGSC---WL---SSAQAATVASLVPRVIG 4131
D FFVTGGG+G + RPRS P+ LPSD+R G E +L R+D TA A CL RRLCFRS+PIHDL +TL +IDP+GV+ MY+EWSN+KNR+LS G EQRSDLALY+ L +E +D S D D I +A + + + S S+ +LC +L G+ S L+VK+ G+S LA A IM A+ NTTLKTL+LSGN++GGTSDL+A+H A S+G GG GE G RLTGG +A L+SN LT+LDLSWNK +G+ A ++G + XXXXXXXX T++ DL + + A ++ S+L TG A R ++L RPSP A LQPRG T EGS + F R++SD +TT+ L VR G+ E W LP GRL G VEF PLPPC A++CNA+G+RG++ AM+ C RV AFRLFVADLF TTNQ LA N NSAE+L++M AV+PQ Y PAFTGGVSGPF+LDLRF +RLAAVRLAEAE FQ + R GA A G+ D+PTG L+LDFVC RPPEG QPISDL LAR+LNSCGMLDPN+W EY+RPTSFPVSFVDLIRLLRVKGRGDKRQAK+LVLLLRVKNSM R R + R+ + G TS+RR YR+GG +A + +PT + V+ AT+ + TAT+ A + +S + A +G V S SNPS+ S ++ +A + A A + +ELTP QAAV+A D +L+ LL GGILR S E GFP+GTP W+ +CGR G R + GG RV G +V D+D M WA +F + FP+ +S EG+ LG+ L +HV RDGD GL+GT PPTLLVHGLCIRV H E++RVLRVKR + ++ WAAV RQGV+G LR+GTKREV SAL ATFA + + + TPRTLGTL+MT DK WR+ FVP EL A A+ G L L LLV V S F P C ++ + G+ W+ + +AATVA++VPRV+G
Sbjct: 7 DPFFVTGGGSGGIHPVGTEVKAGAGLASDLNSCDTS------DHRRPRSNPLPLPSDRRNFFSSGR-EEYTLS----------ARQDVRTADDANCLSHRRLCFRSEPIHDLHVATLRAIDPTGVYGMYQEWSNMKNRVLSGIAGGYAEQRSDLALYDRLHKEAEDDRASSD-------------------------------------------------------------------------------------------------------------------------------------DDASIANAVVASGTIMEQAYRTRS----------PSSGLLCEYLTRSSGLFS-LVVKSCGMSALASAEIMVAVATNTTLKTLNLSGNNMGGTSDLIASHXXXXXXXAASAGVGGSRGE------VGVADRLTGGASVALALDSNNSLTYLDLSWNKALRWLSLAGNRLGDQGAFSLGGALGVNCXXXXXXXXFNGISCPGAAALGHGLRGNTAIKNLQALKSMMTAIVTKTGLTPGVDLMTLRPFVQSGRLMSTAPVAATPTPSSDNEGGPFDLDLCNASERAAAQDILFAGSYL---TGCRLAEVRNLQLVRPSPDAAVLQPRGIFVNGTEGEGSLQGDVP-LEFCARSYSDQQTTLAALSVRVDGEHEAWPLPTKGRLKGLVEFIPLPPCMASVCNATGLRGLLAAMNGCFDARVEAFRLFVADLFMTTNQ-------LAGGPNALNSAEMLKIMAAVSPQTY-----------------------------PAFTGGVSGPFLLDLRFSRHRLAAVRLAEAENFQT-RNVRYRPARAAAAASRAGEDEEVDGGGADDMSDEGASAVANKNSIGDENSVTAPACVAHNGLREPAAKFFQHGLRDKPTGVLELDFVCLSRPPEGMQPISDLRLARLLNSCGMLDPNYWGSSLYSVDVAQSSAVPLLVGVLHEKQSLQRSPEERGRLSPVFVDRSDGEEMSRTTRVQLQPITHQLLAKIPMPHSSNNRSPHQPLSRSEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRVPRVARPRQGEESIPINPQPGRLEGGVIAKISPDVTSSSPCSTKPRQTTRPPTKTDQYQLILVAQGMTSIRRIRYRIGGTASAIVGSTSPTPTLASTVVS--------ATSRSLKKTATSVPAAAATGHYSSVTSPEVGPASGKGDRVDGGVSPPEHSNPSRRDETS--------VRTAAASGAADDSLAKDKHHGSEERKQVARAAE-EELTPVQAAVMAVDKRLQDLLIAGGILRGTTSGRECLQGFPRGTPVWEN-HCGRV-GGRDEGSGGRRVDG--------ANDIVGDEDAAGGAMGWARKFFGVDDGRFPSDESGEGIALGKVLAKHVVRDGDVGLIGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPASGHGEDNAKRHQDEWAAVARQGVQGCRLRIGTKREVASALAATFAGLTTEPNLVSIAATPRTLGTLDMTTDKGWRELFVPLELSASTAVSEAGPLQLTLLVTFVEVSAQFLPSDCFVSSEFTTVDHQGTVTFEWVPLEETTEAATVAAVVPRVLG 1390
BLAST of mRNA_C-linearis_contig11.1165.1 vs. uniprot
Match: A0A6G0WEQ4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WEQ4_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.290e-10 Identity = 63/207 (30.43%), Postives = 96/207 (46.38%), Query Frame = 1
Query: 784 LLRESSEGALRLGHMALGDPYVMALLASLDHLPSLTSIDVSDNRIGSAAIQKVVLTAEEKG-VTSLDLSSNHVDLASTDMLCAFLAHRPGILSSLIVKNAGVSNLAGAAIMAAIGKNTTLKTLDLSGNDIGGTSDLLATHHHEQGSIALSSGGGGMVGEKAGGVRAGATGRLTGGVPIATCLESNYWLTHLDLSWNKIGESNAATIG 1401
++R + + HMA+GD L LP +TS++V +NR+ + I +V K +T LDLS N VD + + L ++A L+ L + + V + A+ NT+L+TL+LSGN IG E ++ S +TGG IA L +N +LT LDLSWNKI ++A +G
Sbjct: 248 MIRNQCGPEINVSHMAMGDEMCKIFAQCLIDLPMVTSLNVRNNRLTDSGIGALVHVCLNKDDLTCLDLSENKVDGDAAEALAEYVAAPTCALTELRMNKSDVDDGEVLGFACALHTNTSLRTLELSGNLIGSA---------EMMNVVKPS-------------------LITGGEAIAEMLCNNSFLTKLDLSWNKIRLNSAVELG 426
BLAST of mRNA_C-linearis_contig11.1165.1 vs. uniprot
Match: A0A8J2SYH1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYH1_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.410e-8 Identity = 70/240 (29.17%), Postives = 104/240 (43.33%), Query Frame = 1
Query: 808 ALRLGHMALGDPYVMALLASLDHLPSLTSIDVSDNRIGSAAIQKVVLTAEEKG--VTSLDLSSNHVDLASTDMLCAFLAHRPGILSSLIVKNAGVSNLAGAAIMAAIGKNTTLKTLDLSGNDIGGTSDLLATH--------------------HHEQGSIALSSGGGGMV----------------GEKAGGVRAGA---TGRLTGGVPIATCLESNYWLTHLDLSWNKIGESNAATIGA 1404
AL L H +LGD AL L LP + + + NR A+ ++ + + G + +LDLS+N +D AS L L+H + SL + +A + + A I+ K+ TLK LD++GN +GG +D HH + SI S G + GGV G T G + + CL ++ LTH+DLSWN+IGE + A A
Sbjct: 382 ALDLSHRSLGDVLGEALARVLPKLPEIGELLAAGNRWSDDALTPLLDSCIKIGPKLKTLDLSANDLDDASARKLAEVLSHEKCGIVSLGLADADLDDAELAPILEQCAKSKTLKVLDVAGNGLGGATDTNGASALAVMRTTSEATTKAHDKKAHHTKNSIGDSKGWAQSKRSFLDARPELKKKVAQSKVLGGVAVGLELLTKNGCGCLELIACLGASSSLTHVDLSWNRIGEKDGAVFAA 621
BLAST of mRNA_C-linearis_contig11.1165.1 vs. uniprot
Match: K3WEV2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV2_GLOUD) HSP 1 Score: 59.7 bits (143), Expect = 5.550e-5 Identity = 54/198 (27.27%), Postives = 82/198 (41.41%), Query Frame = 1
Query: 829 ALGDPYVMALLASL-DHLPSLTSIDVSDNRIGSAAIQKVVLTAEEKG----VTSLDLSSNHVDLASTDMLCAFLAHRPGILSSLIVKNAGVSNLAGAAIMAAIGKNTTLKTLDLSGNDIGGTSDLLATHHHEQGSIALSSGGGGMVGEKAGGVRAGATGRLTGGVPIATCLESNYWLTHLDLSWNKIGESNAATIGAS 1407
+LGD ++ + +P + I V DNR+ A + ++ E + LD+S N + S L A++A L L V+NA + + AA M A KN ++K L +S N IG L TGG IA+ L+ N L HLDLSWN + +++ T+ S
Sbjct: 11 SLGDEFIFEFAKCIVQDIPFVEEILVRDNRLSDAGLNALLEAISEGSSMLNLHRLDISQNEIGEKSAHTLRAYVASSHCTLQILHVENADIDDRECAAFMTAFEKNLSIKHLWMSRNCIGKLEHLNVVQPDF----------------------------TTGGEAIASMLQKNLVLVHLDLSWNYLRLASSITLAHS 180 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1165.1 >prot_C-linearis_contig11.1165.1 ID=prot_C-linearis_contig11.1165.1|Name=mRNA_C-linearis_contig11.1165.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1485bp MSASSSTSLSNGRPRSTPIALPSDQRKLMPIGNIPELSLGMATSGTALSPback to top mRNA from alignment at C-linearis_contig11:405784..423011+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1165.1 ID=mRNA_C-linearis_contig11.1165.1|Name=mRNA_C-linearis_contig11.1165.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=17228bp|location=Sequence derived from alignment at C-linearis_contig11:405784..423011+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:405784..423011+ >mRNA_C-linearis_contig11.1165.1 ID=mRNA_C-linearis_contig11.1165.1|Name=mRNA_C-linearis_contig11.1165.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=8910bp|location=Sequence derived from alignment at C-linearis_contig11:405784..423011+ (Chordaria linearis ClinC8C monoicous)back to top |