mRNA_C-linearis_contig11.1161.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1161.1
Unique NamemRNA_C-linearis_contig11.1161.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1161.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.890e-31
Identity = 71/153 (46.41%), Postives = 96/153 (62.75%), Query Frame = -2 
Query:   34 LALSQEEQGIWKAASKAWQRLLDIEIRELKADHPFISNTYMKLADCEDRQGNPTKAAIWREKELAGLPLAVARVEKQLDGSGVKDCD-VSGLHSVVSTILRLTPD--DRDKAEALLRRWLGLHEEKSRPDDVEVANILYTLGVLVREAGRLDE 483
            LA  QE    W+ AS  W+RLL+IE ++L ADH  +  +Y  LA C ++ G   +AA WR KE+  LPLA+ARV+ Q D   V+  D  +GL SV ST+L+  P   DR +AE LLRR L + E     +D+ VA+ LY LG+ +REAGRL+E
Sbjct:  463 LARLQEAHEDWEGASTTWRRLLEIEKKQLGADHYHVLKSYRSLASCAEQLGQVGEAADWRGKEVEALPLALARVQSQTDSGKVEGLDGANGLASVASTMLKFKPGSIDRAQAEVLLRRSLEIQEAALGHEDIAVADTLYQLGICLREAGRLEE 615
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BLAST of mRNA_C-linearis_contig11.1161.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.010e-30
Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = -2 
Query:   31 RQLARELALSQEEQGIWKAASKAWQRLLDIEIRELKADHPFISNTYMKLADCEDRQGNPTKAAIWREKELAGLPLAVARVEKQLDGSGVKDCD-VSGLHSVVSTILRLTPDDRDKAEALLRRWLGLHEEKSRPDDVEVANILYTLGVLVREAGRLDEA 501
            R  A  +   QE Q   + AS +W+RLL++E REL ADHPF+ NTY  LA   +R GN  +AA W EKE+ GLPLA+AR+   +      D D    L SV +T L   P DR  AE LLRR L + E    P+ ++VA+ L  LGV  REAGRLDEA
Sbjct:  600 RTTAEAVGWFQEAQEDLEGASASWRRLLEVEKRELGADHPFVLNTYGNLAIWAERLGNIEEAAKWHEKEVEGLPLALARMNALVRSGLEADLDDADSLSSVAATALEFRPGDRALAETLLRRSLDVKEAILGPEHLQVADTLRQLGVSAREAGRLDEA 757
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BLAST of mRNA_C-linearis_contig11.1161.1 vs. uniprot
Match: A0A6H5KP64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP64_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.810e-8
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = -2 
Query:    7 DVSGLHSVVSTILRLTPDDRDKAEALLRRWLGLHEEKSR-PDDVEVANILYTLGVLVREAGRLDEAEELLRRCL 225
            D   L SV +T L     DR +AE LLRR L + ++    P+ ++VA+ L  LGV   EAGRLD+ E LLRRCL
Sbjct:   15 DADSLSSVAATALEFRHGDRARAETLLRRSLDIIKKAVLGPEHLQVADTLCQLGVSAGEAGRLDQVEGLLRRCL 88
[Close]
BLAST of mRNA_C-linearis_contig11.1161.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.010e-5
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = -2 
Query:    4 RLTPDDRDKAEALLRRWLGLHEEKSRPDDVEVANILYTLGVLVREAGRLDEAEELLRRCLK 186
            +L P    + E LL R L + E  +  D   VA++L+ LG  +R+AGR+D+AE LLRRCLK
Sbjct:  676 KLGPRGLVETEELLARRLEIVEASTALDHEHVADVLFDLGRCMRQAGRMDKAEGLLRRCLK 736
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KYW3_9PHAE2.890e-3146.41NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZW8_ECTSI1.010e-3047.47NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KP64_9PHAE4.810e-847.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ30_9PHAE6.010e-545.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:365399..365936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1161.1prot_C-linearis_contig11.1161.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 365481..365870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.0732367-UTR-C-linearis_contig11:365398..3654801622927428.0732367-UTR-C-linearis_contig11:365398..365480Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 365399..365480 +
1690879694.4110732-UTR-C-linearis_contig11:365398..3654801690879694.4110732-UTR-C-linearis_contig11:365398..365480Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 365399..365480 +
1622927428.1100423-UTR-C-linearis_contig11:365870..3659361622927428.1100423-UTR-C-linearis_contig11:365870..365936Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 365871..365936 +
1690879694.4303508-UTR-C-linearis_contig11:365870..3659361690879694.4303508-UTR-C-linearis_contig11:365870..365936Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 365871..365936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.0942333-CDS-C-linearis_contig11:365480..3658701622927428.0942333-CDS-C-linearis_contig11:365480..365870Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 365481..365870 +
1690879694.4225855-CDS-C-linearis_contig11:365480..3658701690879694.4225855-CDS-C-linearis_contig11:365480..365870Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 365481..365870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1161.1

>prot_C-linearis_contig11.1161.1 ID=prot_C-linearis_contig11.1161.1|Name=mRNA_C-linearis_contig11.1161.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=130bp
MLATSTSSGRDFSSCNPSQRLRSASALSLSSGVNLSMVETTECRPETSQS
LTPLPSSCFSTLATANGSPASSFSRHIAAFVGLPCRSSQSASFMYVFDMK
GWSAFSSRISISSNLCHALLAAFQIPCSS*
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mRNA from alignment at C-linearis_contig11:365399..365936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1161.1 ID=mRNA_C-linearis_contig11.1161.1|Name=mRNA_C-linearis_contig11.1161.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at C-linearis_contig11:365399..365936+ (Chordaria linearis ClinC8C monoicous)
GATCTTCAGACAGCGCCTCAACAACTCCTCTGCCTCATCCAGCCGTCCCG
CCTCTCGAACAAGCACCCCCAAGGTGTAAAGTATGTTGGCTACCTCAACA
TCATCTGGGCGCGATTTTTCCTCGTGCAACCCTAGCCAACGCCTGAGGAG
CGCCTCCGCTTTATCTCTGTCATCGGGTGTCAATCTCAGTATGGTTGAAA
CGACAGAGTGTAGACCGGAAACGTCACAATCCTTAACGCCACTACCATCG
AGCTGCTTCTCGACCCTGGCCACGGCCAACGGCAGTCCTGCCAGCTCCTT
TTCGCGCCATATCGCAGCCTTTGTAGGATTGCCTTGTCGATCTTCACAAT
CAGCAAGCTTCATGTATGTGTTTGATATGAAAGGGTGGTCAGCCTTCAGC
TCCCGTATCTCGATATCGAGCAATCTCTGCCACGCTTTGCTCGCTGCCTT
CCAAATCCCTTGCTCCTCTTGAGACAGCGCCAACTCCCGGGCGAGTTGTC
GACGTTTGGACTGTGGGTTTACAGGTCCAGAGTCGTTG
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Coding sequence (CDS) from alignment at C-linearis_contig11:365399..365936+

>mRNA_C-linearis_contig11.1161.1 ID=mRNA_C-linearis_contig11.1161.1|Name=mRNA_C-linearis_contig11.1161.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at C-linearis_contig11:365399..365936+ (Chordaria linearis ClinC8C monoicous)
ATGTTGGCTACCTCAACATCATCTGGGCGCGATTTTTCCTCGTGCAACCC
TAGCCAACGCCTGAGGAGCGCCTCCGCTTTATCTCTGTCATCGGGTGTCA
ATCTCAGTATGGTTGAAACGACAGAGTGTAGACCGGAAACGTCACAATCC
TTAACGCCACTACCATCGAGCTGCTTCTCGACCCTGGCCACGGCCAACGG
CAGTCCTGCCAGCTCCTTTTCGCGCCATATCGCAGCCTTTGTAGGATTGC
CTTGTCGATCTTCACAATCAGCAAGCTTCATGTATGTGTTTGATATGAAA
GGGTGGTCAGCCTTCAGCTCCCGTATCTCGATATCGAGCAATCTCTGCCA
CGCTTTGCTCGCTGCCTTCCAAATCCCTTGCTCCTCTTGAATGTTGGCTA
CCTCAACATCATCTGGGCGCGATTTTTCCTCGTGCAACCCTAGCCAACGC
CTGAGGAGCGCCTCCGCTTTATCTCTGTCATCGGGTGTCAATCTCAGTAT
GGTTGAAACGACAGAGTGTAGACCGGAAACGTCACAATCCTTAACGCCAC
TACCATCGAGCTGCTTCTCGACCCTGGCCACGGCCAACGGCAGTCCTGCC
AGCTCCTTTTCGCGCCATATCGCAGCCTTTGTAGGATTGCCTTGTCGATC
TTCACAATCAGCAAGCTTCATGTATGTGTTTGATATGAAAGGGTGGTCAG
CCTTCAGCTCCCGTATCTCGATATCGAGCAATCTCTGCCACGCTTTGCTC
GCTGCCTTCCAAATCCCTTGCTCCTCTTGA
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