mRNA_C-linearis_contig11.1160.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1160.1
Unique NamemRNA_C-linearis_contig11.1160.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:363292..363673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size211
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.2839015-CDS-C-linearis_contig11:363291..3633241622927425.2839015-CDS-C-linearis_contig11:363291..363324Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 363292..363324 -
1690879693.130382-CDS-C-linearis_contig11:363291..3633241690879693.130382-CDS-C-linearis_contig11:363291..363324Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 363292..363324 -
1622927425.2964628-CDS-C-linearis_contig11:363496..3636731622927425.2964628-CDS-C-linearis_contig11:363496..363673Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 363497..363673 -
1690879693.1385367-CDS-C-linearis_contig11:363496..3636731690879693.1385367-CDS-C-linearis_contig11:363496..363673Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 363497..363673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1160.1prot_C-linearis_contig11.1160.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 363292..363673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1160.1

>prot_C-linearis_contig11.1160.1 ID=prot_C-linearis_contig11.1160.1|Name=mRNA_C-linearis_contig11.1160.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=70bp
MRYLAIEEAEEGGGGTAADGALQEMDAWVRKARWPVVPTESSRSCAGTND
VKPDPANEQRKPSDADGEEW
back to top

mRNA from alignment at C-linearis_contig11:363292..363673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1160.1 ID=mRNA_C-linearis_contig11.1160.1|Name=mRNA_C-linearis_contig11.1160.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=382bp|location=Sequence derived from alignment at C-linearis_contig11:363292..363673- (Chordaria linearis ClinC8C monoicous)
ATGCGATACCTGGCAATCGAGGAGGCCGAGGAAGGAGGCGGAGGTACGGC
CGCGGACGGAGCCCTGCAGGAGATGGATGCATGGGTTCGGAAGGCTCGGT
GGCCGGTGGTGCCGACAGAATCTTCTAGGTCCTGCGCGGGGACCAACGAC
GTCAAGCCGGATCCAGCAAATGAGCAGGTGCGCCCTTTGTAGCACACATT
AACCATTGGCGAAATTGCGAAAACTCACAGATCATTCCAGCATGTTGGGG
GGTCCTTGGTCCTGACCAGTTGATTTCTAACGAAGAATATTCCATCGACA
ACTGTTTTTGATTGCATCTCCCGTGCGTTTGTTTCCAACAATTTTCTAGC
GCAAGCCTTCGGATGCCGATGGAGAAGAGTGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:363292..363673-

>mRNA_C-linearis_contig11.1160.1 ID=mRNA_C-linearis_contig11.1160.1|Name=mRNA_C-linearis_contig11.1160.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at C-linearis_contig11:363292..363673- (Chordaria linearis ClinC8C monoicous)
ATGCGATACCTGGCAATCGAGGAGGCCGAGGAAGGAGGCGGAGGTACGGC
CGCGGACGGAGCCCTGCAGGAGATGGATGCATGGGTTCGGAAGGCTCGGT
GGCCGGTGGTGCCGACAGAATCTTCTAGGTCCTGCGCGGGGACCAACGAC
GTCAAGCCGGATCCAGCAAATGAGCAGATGCGATACCTGGCAATCGAGGA
GGCCGAGGAAGGAGGCGGAGGTACGGCCGCGGACGGAGCCCTGCAGGAGA
TGGATGCATGGGTTCGGAAGGCTCGGTGGCCGGTGGTGCCGACAGAATCT
TCTAGGTCCTGCGCGGGGACCAACGACGTCAAGCCGGATCCAGCAAATGA
GCAGCGCAAGCCTTCGGATGCCGATGGAGAAGAGTGGCGCAAGCCTTCGG
ATGCCGATGGAGAAGAGTGG
back to top