mRNA_C-linearis_contig11.1158.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1158.1
Unique NamemRNA_C-linearis_contig11.1158.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1158.1 vs. uniprot
Match: A0A6H5K2Y1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.370e-7
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:    2 ALKPVMNRSGTMLDVHRAIVDKVQDDANKTTSFETVK 112
            ALKP M RSGTM+DVHRAI  KVQ DANKTTS   +K
Sbjct:  394 ALKPAMQRSGTMVDVHRAISKKVQSDANKTTSAYAMK 430
[Close]
BLAST of mRNA_C-linearis_contig11.1158.1 vs. uniprot
Match: A0A6H5K9H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H0_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 6.730e-6
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:    2 ALKPVMNRSGTMLDVHRAIVDKVQDDANKT 91
            ALKP M R+GTM+DVHRAI  KV DD NKT
Sbjct:   34 ALKPAMTRTGTMVDVHRAISGKVSDDVNKT 63
[Close]
BLAST of mRNA_C-linearis_contig11.1158.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 6.550e-5
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 2 
Query:    2 ALKPVMNRSGTMLDVHRAIVDKVQDDANKTTSFET 106
            ALKP M R+GTM+DVHRAI  KV DD NKT +  T
Sbjct:  154 ALKPAMTRTGTMVDVHRAISGKVSDDVNKTKTQTT 188
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2Y1_9PHAE4.370e-772.97SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9H0_9PHAE6.730e-673.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1S8_9PHAE6.550e-565.71SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:347078..347874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1158.1prot_C-linearis_contig11.1158.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 347094..347871 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.2086492-UTR-C-linearis_contig11:347077..3470931622927425.2086492-UTR-C-linearis_contig11:347077..347093Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 347078..347093 +
1690879693.095504-UTR-C-linearis_contig11:347077..3470931690879693.095504-UTR-C-linearis_contig11:347077..347093Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 347078..347093 +
1622927425.24765-UTR-C-linearis_contig11:347871..3478741622927425.24765-UTR-C-linearis_contig11:347871..347874Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 347872..347874 +
1690879693.1223638-UTR-C-linearis_contig11:347871..3478741690879693.1223638-UTR-C-linearis_contig11:347871..347874Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 347872..347874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.2218654-CDS-C-linearis_contig11:347093..3471731622927425.2218654-CDS-C-linearis_contig11:347093..347173Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 347094..347173 +
1690879693.1040764-CDS-C-linearis_contig11:347093..3471731690879693.1040764-CDS-C-linearis_contig11:347093..347173Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 347094..347173 +
1622927425.2348871-CDS-C-linearis_contig11:347777..3478711622927425.2348871-CDS-C-linearis_contig11:347777..347871Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 347778..347871 +
1690879693.1119788-CDS-C-linearis_contig11:347777..3478711690879693.1119788-CDS-C-linearis_contig11:347777..347871Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 347778..347871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1158.1

>prot_C-linearis_contig11.1158.1 ID=prot_C-linearis_contig11.1158.1|Name=mRNA_C-linearis_contig11.1158.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=58bp
MNRSGTMLDVHRAIVDKVQDDANKTTSFETVKANWLGQFDFVPSATVCAR
RAAARSL*
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mRNA from alignment at C-linearis_contig11:347078..347874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1158.1 ID=mRNA_C-linearis_contig11.1158.1|Name=mRNA_C-linearis_contig11.1158.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=797bp|location=Sequence derived from alignment at C-linearis_contig11:347078..347874+ (Chordaria linearis ClinC8C monoicous)
CGCTTTGAAGCCGGTGATGAACAGGTCGGGGACTATGCTCGACGTACACC
GGGCCATCGTAGACAAAGTCCAAGACGACGCCAACAAAACGACAAGGTGG
GCGGCTGTTGAACCTCTGGAGTATTGTTCGAAGACATTGTTTGCATTGCG
TAATATCGACGTCAGGGACAAATTGAAGTAGGAGATAGTTGGTGCCTGCC
GAAAGACAGTCTCTCCCACCATTCCTCTTGTTTCTTATTTTTGGCGACCT
TATTTTTATTTTTCCCTTGATTAAATGTGGACTGCCAGTGCTCTGGCAAG
CCGGGGGTAAGAATATATAGCCAAAAGTAGGAATAAATCGGGAATATATC
ATGGGCCCATCATATCACAATTTCATTTCCTCGTATCCTGTCTGCGTTGT
ATTACGAGGGGGAGGATTCGATTTGTTCGTTTCGCTGGCTGGCATTGTAC
AAGTACCAAGACGTTCCATTCTTATTTTGTTCGTCACATAGCGTGCAGGA
GGGAGCGGAAAGCTCCACACTTTTTTGTTTCGGTTGTTTATCGCTTTGCG
GACCCTCGCTTGCAATGTCATGATGTCACCCACAGAATTTTAACATTAGC
GTGCCTGTGCCACTTACGTGTTGCTCTAACCCGTACTTTCACCTTCGACC
CGCGTGCTTGTTACTGTGGTCCAACGCGTGCGTCTCCCAACTCCATCCAG
CTTTGAGACAGTGAAGGCCAACTGGCTCGGACAGTTCGACTTCGTCCCGT
CGGCGACGGTATGCGCCAGGCGGGCTGCAGCGCGTTCGCTATGAAGG
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Coding sequence (CDS) from alignment at C-linearis_contig11:347078..347874+

>mRNA_C-linearis_contig11.1158.1 ID=mRNA_C-linearis_contig11.1158.1|Name=mRNA_C-linearis_contig11.1158.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at C-linearis_contig11:347078..347874+ (Chordaria linearis ClinC8C monoicous)
ATGAACAGGTCGGGGACTATGCTCGACGTACACCGGGCCATCGTAGACAA
AGTCCAAGACGACGCCAACAAAACGACAAGATGAACAGGTCGGGGACTAT
GCTCGACGTACACCGGGCCATCGTAGACAAAGTCCAAGACGACGCCAACA
AAACGACAAGCTTTGAGACAGTGAAGGCCAACTGGCTCGGACAGTTCGAC
TTCGTCCCGTCGGCGACGGTATGCGCCAGGCGGGCTGCAGCGCGTTCGCT
ATGACTTTGAGACAGTGAAGGCCAACTGGCTCGGACAGTTCGACTTCGTC
CCGTCGGCGACGGTATGCGCCAGGCGGGCTGCAGCGCGTTCGCTATGA
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