mRNA_C-linearis_contig11.1156.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1156.1
Unique NamemRNA_C-linearis_contig11.1156.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:134033..139273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1156.1prot_C-linearis_contig11.1156.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 134035..139273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.0697134-CDS-C-linearis_contig11:134034..1340891622927425.0697134-CDS-C-linearis_contig11:134034..134089Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 134035..134089 -
1690879693.02103-CDS-C-linearis_contig11:134034..1340891690879693.02103-CDS-C-linearis_contig11:134034..134089Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 134035..134089 -
1622927425.0813925-CDS-C-linearis_contig11:134221..1345111622927425.0813925-CDS-C-linearis_contig11:134221..134511Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 134222..134511 -
1690879693.032774-CDS-C-linearis_contig11:134221..1345111690879693.032774-CDS-C-linearis_contig11:134221..134511Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 134222..134511 -
1622927425.0933857-CDS-C-linearis_contig11:139246..1392731622927425.0933857-CDS-C-linearis_contig11:139246..139273Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 139247..139273 -
1690879693.041674-CDS-C-linearis_contig11:139246..1392731690879693.041674-CDS-C-linearis_contig11:139246..139273Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 139247..139273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1156.1

>prot_C-linearis_contig11.1156.1 ID=prot_C-linearis_contig11.1156.1|Name=mRNA_C-linearis_contig11.1156.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=124bp
EARGHSPREVRSVHDVSGTNYFVQARRCQCASTACKAVQERVVEKLKNRQ
TPLAQDLPKTSDGRGGKRDLTSAEMERLRQGKLDGMQPVVAGFLRGAAAF
SINTPQNYRRRCRRPTRSSSFRQE
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mRNA from alignment at C-linearis_contig11:134033..139273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1156.1 ID=mRNA_C-linearis_contig11.1156.1|Name=mRNA_C-linearis_contig11.1156.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5241bp|location=Sequence derived from alignment at C-linearis_contig11:134033..139273- (Chordaria linearis ClinC8C monoicous)
GAAGCTAGGGGGCATAGCCCTCGAGAGGTGAGAGTAGCCGCTGCTACGGG
GTATGGTGTGTATCCAGCATGGGAGACGATGCTAGAGGCGGGACGTTTGG
TGGTGGTGGTGTTCACAACCAAAACCGAATGATAAACGTAAAATACCAAT
CACCCACATTCGACGGCAAGACAACGGATTTCGTCGGATGGTATGAGGAC
TTCATCCAGGAAGCCAAAGCAGTCGACCTCATGGAATTCTTCATAGAGGG
TGGATACGAAATCCCCGTACACGACAACACAAGGAGTGAAGCTGACCTGT
ACAACGAGTACCCACGCGATCGAGTTGATATGGCGTTCCATGCTTGGGGG
TTCTTGAGGCACGCCTTCAAGGAGGAGGGTGACAGGAGGACCATGAACAG
GGCCCTCACACCCCAGGGGGCATTCCAGGAGCTGAAGGCGATTTCTTACC
CAGACTCTCAAGTACACTCCCAAGCCGACATGGACCAGTTCATGTCGTAC
AAAACCCACGCCAACAAACACCCCATCGAGGGTCTCAACAACATGCTGAC
TCTGGCAGAACGCATGAACGAGAGCGGAATTAGCGTTAACCAACATTTTG
TCTTGTACCGTTTCTTGGATGCCCTTCCCGACGCCGAGTACGAACTCTCG
AAGCACAAGCTGCGAGGCATGTTTCCGTCGGAGATGACTCGTACCGTTGT
TGTTCGTGAAATCAGCACTCAGCACACTGACCTGATGAAGAGGAGGGCAG
GTAAAGGGTCACGCGGCTCCGAGCAGGCTTACATCGCCGATGGTGGCCGC
AGCGCACGGTCGTCAGGCCGTAGTCGTCGTCGCGGCCGCAACAGCGGTCG
CGGCGGCGGCAATGGCGGCGGACGCAGCAGTGGCGGCGGTGGCGGAAAAG
GCAGCAAGGCGGAGAACGGCGGAGGCGCTGGAGGCGCTGGAGGCAGCTCC
GGTGGCTCTGGCAGCATTGGGAGGATCTTCCGCTGTTACAGGTGCGGGAA
GAAGGGCACAAGGGCCTCGACTGCACCACGCCGGAGAGCGACCGCCTTCC
GCAGTGCTCGCACTGCGGAGGCTTCGGGCACAAGAAGAACGCCTGCCCGA
CGGAGGAGGCGGTGCTTGCGGAGGTGATGAGCGGCGTGGACTCTGTCGAG
AACCAGGCGTTCGCGGCCGAGTTGGACCAACCAGGCGAGTGTGGTGCCGT
TGGTCTAGTGGGGGGTATGGAACATGGCCAGGATGTCATGAAGGGCGTGG
CTGATACAGCGGCCACGTGGTCCATGTTCACAAGCCCAGATGGCTTTGTG
AACTACCGAGAGAGAGGTGGTTGGGTGAAGGGGGTTATGTATGGTTCCCC
CGGAACGGCAAACTGCTCACCCAAGTGGGTTATCAAACCGAGCCCACGGT
AGACATCGCCTGTGCCGCCGTAGTTGTTCCTGGTCAAGCGAAAGCGGCCA
CCCCCACTGACCTCAACTACTACCACAACTCGCACGGCCACACTCACGAG
CGGTTGCTCAGGATCACGGCCAAGCAGCAGGGAGCGGAGCTGACCAATGG
GCCGCTCCAGCACTGCCTAGGCTGTTCCATGTCCAAGGGACAGGTGAAGT
CCATCAAAAAGATCACGGACAACCGCGCACCGATGCCCCCAACAGATGAG
GAGGGTCCTGCAAACGGTGAGGGCGAGGGCAGGGAGGGCGCGTCAAGTCA
AGGGGGAGGGGGGGAGGACGACTTGAAGAGCGAATCCGACCTCGATGTGA
CGGAGATCCGTGGGCCAGGGCAAGCGACACCGCCGACGCGTCAGACGCCG
GCGGTACCCGGAAACGGGAATCCGGGGGGCGAAGGTAGCGTCTCCCCGTC
GCCCCTCTCGGGAGGAGGCGACTTCGGTGACCCGGGGGTGAAGGTAGCAT
CCCCCCGTCGCCCCTCTCGGGAGGAGGCGACCCCGGTAGTGGCGACGATT
TCCGTGGCCACACCAGCACCAGCACCAGTAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGGCTCGGACGGCGG
CGCCGACAGCCCCGGCGGCGACGACTACGATCCCGCCGACAGCCACTACC
CTCAAAGACGAGAGGGGAGCAAGCTCCACTGGACCGCCTCGGCGGGTGGA
CCGATGCGTCATGACCTACAGCCTGGCCGCACGCGGAAAGAGACCCGAGA
GTCCCGGGAGTTGGCAAATTGCACCGTGGAGGATTTTCATGCTGCGGTCA
TGGAGGACGAGCACGGCGCGAAGAAGGTCGAGGAGTATATTTGCAACTCG
CTGGTGGAGGACCGTCTACAGGAGGAGCAGGCGTTTCGTGAGGCGGAGAT
GGCGTTTCATGCAGCAATCGACGAAGAGGAACGCCGGAACGTCATCGACA
CCTCCAAGCTTCCGCTCTACACGCCAGAGCTAAGTACCCACTCGCCAATC
GGGCAGAAACCTAACGATGTAGAGGCTCTCCTGATGTCGTACGAAGATAT
GAAACGGTCTAAGTACAGAACGTGGTGGGAAGAGGCAATCAAGAAAGAGT
TGGACGGACACGATAAAACGGGGACTTTTTCGTCGATAGGCTCAGTACCG
GAAGGAGGGCGGAAGCCAGTCAGTTCGAGATGGGTGTTCGCATAGAAAAT
CAACGAGTTGGGTGTGATCGCTGACTTTAAGGCTCGTCTGGTTGCGCGTG
GATTCTCCCAAATCCACGGTGTAGACTACCACCACTCATCCTCAGCATGC
CCGTCTACAGCGTCCATTAAGACTGTGTTGGCTGTAGCCCATGAGAAGGA
AATGCCCGTGTACTACTGGGATGTCAGGCAAGCATACATCCACGCTACTG
TACCATCAAAGAGGAACTTTATCTGAGGTTTCCCCCTGGTTGCGGTAGCA
AGACTGGCAAGGTTTACAAGGTTGAACGTGCCATATACGGCCTGAAGCAG
AGCGGTCGTGAGTGGGGGCATGAGGCTGCTGATACCCTGATCGAGAACGG
GTTCGAGCAATGTAAGGCTGATCCGTGTGTTTTCCGTAAGATGGTAGACG
GGGAGCTGATCAGTATTATCGTGATCTACGTGGTGGGCGATATCATGTTT
GGAGGGTCTGAGAAAGAGCGCAAGGAGTTGCTTGCTTCCCTCCAAACAAA
GTTCCCAGTCAAGGACTTGGGATATTGCACGTATTACGATGGGTGTGCGA
TTGAGAGGGATGCAGAGTTGGGAACAACTGCTTTGTCTCAGAAGAAGGCG
TACATTGCGGGAATGATGGACCGATTCAACACCACGACAACCGCCCACCT
CCCCGCTACCCCCGGTGTTACCCTAGGGCCGATCAGCCCAGGGTGGACAA
GCCTGTGAGGGAGGCGATCGGGTGCCTGACGTGGTCGGCGGCTTATACAA
GGCCAGACATCTCCCACGCCCTGAACAAGGTGCAGAGGCACGCCAACGCC
CCAACCGAGGAGGTTTGGGAGGCAATCGTGCAGATCCTGTCCTACCTGAA
CGGCACGAGGGACCTCAGGATCACCTACGTGCGGGGTTCAGGGCTAGACC
TAGCGGTGTACATTGATGCGAGCTACGCCGATGAGGATGCCGATAGGCGT
TCGATGTCGGGGATAGCCGTGACCCTAGGGGGTGCCGTGGTGAGCCGCAC
TAGCAAGACGCAACGTGTAGTGGCTCTGTCGACCGCAGAGGCTGAGTATG
TCGCAGCCGGGGAGGGCGTCAAGGAGACGCTGTTTGTGCGAGCGTGCGGT
TCTGTCGTTTGTAGCGCCCGAGACGAATGGGGCTAGCACCCAGGTCCGTG
AGGATAACCAGGGGGCGATAGCGCTGATACAGAACCCCCCCAGCTCCGCG
AGGAGCAAGCACATCGACGTGCGGTACCACTTCATTCAGGAGTTGTTCAA
GTCGGGCAGAATCACCGTGAAGTATGTCTCGACCGACGTGCAGCACGCTG
ACCTACTGACCAAGGCCCTGAGTAGGACCAAACTAGAGTACCACCGGAAG
GCTCTGATGAACCTGCCGGGATAGGGTATTGTTTGTGTTGTCAGCCCTTG
GTGATTACTATGTACGGTATAGTCATGCGGAGAAAGACAATGACATCTCG
CATTACTGTCGCGGTCTGTGCATCTATGGCAGGAGTAGGGGGCACTACGC
CCGGAGGAACTAGATTCCTTGCGATCTCTGGTATTATTCTTGTCTTCGCC
TTAGTAGTCATTTTGTGAAAGTGCGGCCGTTGGAATCCTCCGTGATAGCG
ACGGTTTTGTGTTTAGGATAATGATAGGCAAGGGTTTTTGATCCGGTTGG
CCGGGTCTCTTGCACCGTTATTGATTTTAGGTATGATCTGGGGTATCCAT
GCCCCACTGATGGTTATTCACTTGCGTGAAGAACCAGGGAGGGTGTTCGT
GTGTTTGGATACGAACGGTTAGATCTACCCCGAATAGCGGATGTATACGC
AGATGAGGACGTATGACACGTATTGGGATTGCATGCAGTATGCGGAGCCC
CCTCCGAATTCGGGAGGCTGGCACTTCTTTTCCTTCTCTCGTGCTCTACG
TTTCTAAACAAAGCGATAAAAAAGTCTTTACCTCCGGAATAAAGGACATA
CACGAATAGTGCCGTACATGAAGGGCTATCGTTGTGGCTTGCAAACCGAA
ATATCACAAGTGAAACAACACAATTTATTTGTTTTTAAGGTGTGTCGTGT
TGTCGCCCTCCTTGCTCTGTTGTTGGTGAATATTTATTGTTTGCCGCTGC
TTTCTTCGACAGGTACGATCGGTGCATGACGTTTCGGGGACGAACTATTT
CGTGCAGGCGCGACGCTGTCAGTGCGCCAGTACCGCGTGCAAGGCTGTAC
AAGAGAGGGTGGTGGAGAAGTTGAAGAACCGCCAGACACCTTTAGCCCAA
GACCTTCCTAAAACGAGCGACGGCAGGGGTGGAAAGCGCGATCTGACATC
GGCGGAGATGGAGAGGTTGCGGCAAGGAAAACTGGATGGAATGCAACCCG
TGGTGGCAGGCTTTCTGCGAGGAGCAGCGGCGTTTTCCATCAATACCCCG
CAGTAAGTGAGGCAGTTAGCGGGCAGCGGGAGCCAACGTATCGCTTGATT
GGTGAATGTGGGCAACCTTTGGTACATCCCGCCTGAACTTTGATTTCCAT
TATTATGCTGTCGTGCCGCCACAAATACATGCAGGAATTACCGGAGGAGG
TGCAGAAGGCCTACTCGTTCGTCTTCCTTCCGGCAGGAGGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:134033..139273-

>mRNA_C-linearis_contig11.1156.1 ID=mRNA_C-linearis_contig11.1156.1|Name=mRNA_C-linearis_contig11.1156.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at C-linearis_contig11:134033..139273- (Chordaria linearis ClinC8C monoicous)
GAAGCTAGGGGGCATAGCCCTCGAGAGGAAGCTAGGGGGCATAGCCCTCG
AGAGGTACGATCGGTGCATGACGTTTCGGGGACGAACTATTTCGTGCAGG
CGCGACGCTGTCAGTGCGCCAGTACCGCGTGCAAGGCTGTACAAGAGAGG
GTGGTGGAGAAGTTGAAGAACCGCCAGACACCTTTAGCCCAAGACCTTCC
TAAAACGAGCGACGGCAGGGGTGGAAAGCGCGATCTGACATCGGCGGAGA
TGGAGAGGTTGCGGCAAGGAAAACTGGATGGAATGCAACCCGTGGTGGCA
GGCTTTCTGCGAGGAGCAGCGGCGTTTTCCATCAATACCCCGCAGTACGA
TCGGTGCATGACGTTTCGGGGACGAACTATTTCGTGCAGGCGCGACGCTG
TCAGTGCGCCAGTACCGCGTGCAAGGCTGTACAAGAGAGGGTGGTGGAGA
AGTTGAAGAACCGCCAGACACCTTTAGCCCAAGACCTTCCTAAAACGAGC
GACGGCAGGGGTGGAAAGCGCGATCTGACATCGGCGGAGATGGAGAGGTT
GCGGCAAGGAAAACTGGATGGAATGCAACCCGTGGTGGCAGGCTTTCTGC
GAGGAGCAGCGGCGTTTTCCATCAATACCCCGCAGAATTACCGGAGGAGG
TGCAGAAGGCCTACTCGTTCGTCTTCCTTCCGGCAGGAGGAATTACCGGA
GGAGGTGCAGAAGGCCTACTCGTTCGTCTTCCTTCCGGCAGGAG
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