mRNA_C-linearis_contig11.1155.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1155.1
Unique NamemRNA_C-linearis_contig11.1155.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:133426..133744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927427.9893112-CDS-C-linearis_contig11:133425..1337371622927427.9893112-CDS-C-linearis_contig11:133425..133737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 133426..133737 +
1690879694.392974-CDS-C-linearis_contig11:133425..1337371690879694.392974-CDS-C-linearis_contig11:133425..133737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 133426..133737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.0064702-UTR-C-linearis_contig11:133737..1337441622927428.0064702-UTR-C-linearis_contig11:133737..133744Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 133738..133744 +
1690879694.4019744-UTR-C-linearis_contig11:133737..1337441690879694.4019744-UTR-C-linearis_contig11:133737..133744Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 133738..133744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1155.1prot_C-linearis_contig11.1155.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 133426..133737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1155.1

>prot_C-linearis_contig11.1155.1 ID=prot_C-linearis_contig11.1155.1|Name=mRNA_C-linearis_contig11.1155.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=104bp
PHKNNVESPHVPALLLLFYTSQASRKTILSQQFKHETLNDELVAVPAKNG
HSQPPILRFFAVAFGYFCLRRDSLQIFRVSHPVAHYLYDTAHPLLQQFSE
AIE*
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mRNA from alignment at C-linearis_contig11:133426..133744+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1155.1 ID=mRNA_C-linearis_contig11.1155.1|Name=mRNA_C-linearis_contig11.1155.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=319bp|location=Sequence derived from alignment at C-linearis_contig11:133426..133744+ (Chordaria linearis ClinC8C monoicous)
CCGCACAAAAACAATGTAGAATCACCCCACGTGCCTGCTCTGTTATTGTT
GTTCTACACATCGCAGGCGTCAAGGAAAACGATATTATCGCAACAGTTTA
AACATGAAACACTCAATGATGAGCTCGTCGCAGTCCCTGCCAAAAATGGC
CACAGCCAGCCGCCTATTCTACGTTTCTTCGCCGTCGCGTTCGGTTATTT
CTGCCTCCGCCGCGATTCTTTGCAAATTTTCCGCGTGTCCCACCCCGTAG
CTCATTATTTGTACGATACCGCGCACCCGCTTCTTCAACAGTTTTCTGAG
GCCATCGAATAAAACCGCA
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Coding sequence (CDS) from alignment at C-linearis_contig11:133426..133744+

>mRNA_C-linearis_contig11.1155.1 ID=mRNA_C-linearis_contig11.1155.1|Name=mRNA_C-linearis_contig11.1155.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at C-linearis_contig11:133426..133744+ (Chordaria linearis ClinC8C monoicous)
CCGCACAAAAACAATGTAGAATCACCCCACGTGCCTGCTCTGTTATTGTT
GTTCTACACATCGCAGGCGTCAAGGAAAACGATATTATCGCAACAGTTTA
AACATGAAACACTCAATGATGAGCTCGTCGCAGTCCCTGCCAAAAATGGC
CACAGCCAGCCGCCTATTCTACGTTTCTTCGCCGTCGCGTTCGGTTATTT
CTGCCTCCGCCGCGATTCTTTGCAAATTTTCCGCGTGTCCCACCCCGTAG
CTCATTATTTGTACGATACCGCGCACCCGCTTCTTCAACAGTTTTCTGAG
GCCATCGAATAACCGCACAAAAACAATGTAGAATCACCCCACGTGCCTGC
TCTGTTATTGTTGTTCTACACATCGCAGGCGTCAAGGAAAACGATATTAT
CGCAACAGTTTAAACATGAAACACTCAATGATGAGCTCGTCGCAGTCCCT
GCCAAAAATGGCCACAGCCAGCCGCCTATTCTACGTTTCTTCGCCGTCGC
GTTCGGTTATTTCTGCCTCCGCCGCGATTCTTTGCAAATTTTCCGCGTGT
CCCACCCCGTAGCTCATTATTTGTACGATACCGCGCACCCGCTTCTTCAA
CAGTTTTCTGAGGCCATCGAATAA
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