mRNA_C-linearis_contig11.1151.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1151.1
Unique NamemRNA_C-linearis_contig11.1151.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:105883..106652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927424.4089446-CDS-C-linearis_contig11:105882..1060061622927424.4089446-CDS-C-linearis_contig11:105882..106006Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 105883..106006 -
1690879692.991652-CDS-C-linearis_contig11:105882..1060061690879692.991652-CDS-C-linearis_contig11:105882..106006Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 105883..106006 -
1622927424.4215648-CDS-C-linearis_contig11:106575..1066521622927424.4215648-CDS-C-linearis_contig11:106575..106652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 106576..106652 -
1690879693.00507-CDS-C-linearis_contig11:106575..1066521690879693.00507-CDS-C-linearis_contig11:106575..106652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 106576..106652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1151.1prot_C-linearis_contig11.1151.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 105883..106652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1151.1

>prot_C-linearis_contig11.1151.1 ID=prot_C-linearis_contig11.1151.1|Name=mRNA_C-linearis_contig11.1151.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=67bp
MNRLQWKDETDNRGGRDVVPAAFVFGRSDSEDSTRAYVCIRLHISAHAKK
LTFGFTAFHHLWYGST*
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mRNA from alignment at C-linearis_contig11:105883..106652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1151.1 ID=mRNA_C-linearis_contig11.1151.1|Name=mRNA_C-linearis_contig11.1151.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=770bp|location=Sequence derived from alignment at C-linearis_contig11:105883..106652- (Chordaria linearis ClinC8C monoicous)
ATGAATCGGCTCCAGTGGAAAGATGAAACGGACAATCGAGGGGGGAGGGA
CGTCGTGCCAGCTGCCTTCGTGTTTGGGTGGGTGGTGACTTTTGACCTGG
TTTTATGTTCTTTTTGTGGAATGAGCTTTTTTTCTGAATTTTGCACGCCT
TCGCTGCTCGTGGCTTTAGGTTGTCGCACGTGGGTGACTGTTGCCCCCGA
AAAAGTGGAGTTGTGCCGTGCATGGCTGCGTAACTACCTGTGCCCCTTTG
ATTCCCGTGGTAGTGCGGGTGTTGGGGGAAAAGCGAAACAAGAGCGGCAT
CTCTTCGTTAGATGAGAAATGAACTTGCAAGGCGTTCTATCGCGCTCTCT
GTGAACGGGGGCGTTCGGCGGTTGCGCTCAAAGCCCCCTTGTATCATTTT
TCGTGGTGTTCTCTAGAGGTTTACGGAGAAGGCCACACAAGTGCCGAGCC
TCTTTCTGGGACACCAAGTGAGCAACGCAGTTGTCTCGCGCTGATTGTGT
TCACGAGGATTCGACGAGCTTTCGTTGTGCCGATCGAGGGATAGCGCCGT
ATAGCGCCGTGGGCGTTTTTTGTTCTTTGCCTTGGCAGGTTAACTCCGAG
AGACCACAGCGCATAACACCTCATTGGTCCCTTTGTTCCTCCGCAGGCGC
TCGGATTCGGAAGATTCGACGCGCGCTTACGTTTGTATCCGGCTACACAT
CTCTGCCCATGCGAAGAAGCTGACTTTTGGATTCACCGCCTTCCATCACC
TATGGTACGGCAGTACCTAA
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Coding sequence (CDS) from alignment at C-linearis_contig11:105883..106652-

>mRNA_C-linearis_contig11.1151.1 ID=mRNA_C-linearis_contig11.1151.1|Name=mRNA_C-linearis_contig11.1151.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at C-linearis_contig11:105883..106652- (Chordaria linearis ClinC8C monoicous)
ATGAATCGGCTCCAGTGGAAAGATGAAACGGACAATCGAGGGGGGAGGGA
CGTCGTGCCAGCTGCCTTCGTGTTTGGATGAATCGGCTCCAGTGGAAAGA
TGAAACGGACAATCGAGGGGGGAGGGACGTCGTGCCAGCTGCCTTCGTGT
TTGGGCGCTCGGATTCGGAAGATTCGACGCGCGCTTACGTTTGTATCCGG
CTACACATCTCTGCCCATGCGAAGAAGCTGACTTTTGGATTCACCGCCTT
CCATCACCTATGGTACGGCAGTACCTAAGCGCTCGGATTCGGAAGATTCG
ACGCGCGCTTACGTTTGTATCCGGCTACACATCTCTGCCCATGCGAAGAA
GCTGACTTTTGGATTCACCGCCTTCCATCACCTATGGTACGGCAGTACCT
AA
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