mRNA_C-linearis_contig11.1149.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1149.1 vs. uniprot
Match: D8LKL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL5_ECTSI) HSP 1 Score: 596 bits (1536), Expect = 4.370e-193 Identity = 314/571 (54.99%), Postives = 396/571 (69.35%), Query Frame = 3
Query: 72 DDVGNMGQEKRIISKLRTGPGRVTVLYLVGLVGCTIAGLAAPELFISKTAVFSFPDPDAANSASAVYEFDISDYKRSHQSIYFSMRLNLPIQLQQAMELNGQTSYETEGQYALALYGSQQSFLA--SEDCPNGCLSCPGGDDELGLTCDLISGDSTGDESIVCERGDDWCSWLSLYSLNFVTHRTYYWSLETENEIDEYIAAATPSADEGWETEFRVVFVSQWYTAFEVAWFYSWLVITLFAMFLPRHGFFALAITQGLRWNAWNRLQKWASVLLVGLVFFNNPFVAAQIYSGSPKSCFFLYALSEGVFVSLVLLFLADMIFEAGRGQNEIRTKGATAKGAGVVLIILLCTVYTVNMIDLRVSRDGNPDRVHKYPYTSTATERMLTVLCLIYCFWVVVLSGRAWWWGGKVSEKLRSSWRVQFFVAASLVTMLLLLPAIILEYLQPRVRGALLRRGTAFTLSHGGVNLYVMALALLCAPRHLEDKTYD-----------DEDDGIAKAERTVNPIAHQRAVE-MAEGQGP----------------GYKKSSGKWWQGKKRPKIGDSSVWED 1694
++ GN+ QEK ++S LRT G V V Y +GL+ C AG+ P LF SK AVFS + A +A+ Y FDIS Y+R+HQSIY +MRLN+PIQLQ +MELN QTSYETEG Y ++LYGS QS L + CP GC+SCP GD+ LGLTCDL+S D+TG ES+ CE G++WCSW+SLYS+NFV H+TYYW++ET+N +DE+IA A P A + W +EF E+AW+Y+W +TL MFLP GFF +A+ +RW+ W RLQKWA+VLLVGL FFNNPF+AAQIY SPKS F YA++EGVFVSL+LLFL D +FEAG NE TKGA A+GAGV+L +LLC VY +NMID+RVSRDGNPDRVHKYPYTST TE++LTVL +YC W + L+GRAW WG + EKLRSS R +F V +S VT+ LLLPAIILEYLQPRVRG G AFTLSHGGVNLYV+ALALLCAP + + D + DD + + T+NP+A+ RAV+ + E +G + W KK ++ +S++WED
Sbjct: 10 ENPGNLWQEKGLMSTLRTWTGLVAVGYTLGLLACLAAGVTGPGLFTSKNAVFSTIEGTA--TAATNYAFDISQYERTHQSIYLAMRLNIPIQLQNSMELNDQTSYETEGSYRISLYGSPQSTLGRGGDVCPYGCVSCPEGDEGLGLTCDLLSEDATGGESVACEGGEEWCSWMSLYSVNFVEHKTYYWAIETDNGMDEFIADADPDAFQDWLSEF------------ELAWYYTWAFVTLLVMFLPPRGFFTVALRDDIRWSKWTRLQKWAAVLLVGLFFFNNPFLAAQIYGASPKSTFIWYAVAEGVFVSLLLLFLLDRLFEAGNADNERGTKGAPARGAGVMLALLLCIVYVINMIDIRVSRDGNPDRVHKYPYTSTGTEKILTVLVFVYCCWALPLAGRAWRWG-RGREKLRSSPRARFVVLSSFVTLALLLPAIILEYLQPRVRG-----GAAFTLSHGGVNLYVVALALLCAPTRAKKEATDAKSSSSPSVAGEADDDVIRT--TINPMANHRAVDTVQEEEGDEXXXXXXXXXXXXXXXXXXRPRSHIWSRKKPARVQNSTLWED 558
BLAST of mRNA_C-linearis_contig11.1149.1 vs. uniprot
Match: A0A812S7F5_SYMMI (TMEM181 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S7F5_SYMMI) HSP 1 Score: 81.3 bits (199), Expect = 1.240e-12 Identity = 63/244 (25.82%), Postives = 107/244 (43.85%), Query Frame = 3
Query: 552 CERGDDWCSWLSLYSLNFVTHRTYYWSLETENEIDEYIAAATPSADEGWETEFRVVFVSQWYTAFEVAWFYSWLVITLFAMFLPRHGFFALAITQGLRWNAWNRLQKWASVLLVGLVFFNNPFVAAQIYSGSPKSCFFLYALSEGVFVSLVLLFLADMIFE------AGRGQNEI-RTKGATAKGAGVVLIILLCTVYTVNMIDLRVSRDGNPDRVHKYPYTSTATERMLTVLCLIYCFWVVVL 1262
C+ G C ++ V ++ Y ++ ++ + ++ S T ++ Y+ FE+ W +++ TL MFLP GF + + + W+ Q W LLVGL+FFN+PF AAQ+Y+ S LY F+ +VLLF ++ E G G + R + + L+ L+ T+ +R+ R G+P + E +L VL IYC ++ L
Sbjct: 31 CKGGKTACKSFYIFGQPSVEYKRYNVHIDFKDTDGHFTSSDKLSVKVDLHT------INSEYSKFELGWKCFFILTTLVVMFLPEEGFLIRLLA--VPYRLWSFEQTWVLTLLVGLIFFNDPFFAAQLYTHKSDSMAILYIFFTTAFLGIVLLFWLCVLDEMRTTDSGGVGSMDTGRRRPFAFYTPKLTLVTLIWTLLMTTYAYVRLERLGDPTYEGLDDWVLLDIEIVLAVLLFIYCLYLFAL 266 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1149.1 >prot_C-linearis_contig11.1149.1 ID=prot_C-linearis_contig11.1149.1|Name=mRNA_C-linearis_contig11.1149.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=550bp MMDDVGNMGQEKRIISKLRTGPGRVTVLYLVGLVGCTIAGLAAPELFISKback to top mRNA from alignment at C-linearis_contig11:62622..82692+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1149.1 ID=mRNA_C-linearis_contig11.1149.1|Name=mRNA_C-linearis_contig11.1149.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=20071bp|location=Sequence derived from alignment at C-linearis_contig11:62622..82692+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:62622..82692+ >mRNA_C-linearis_contig11.1149.1 ID=mRNA_C-linearis_contig11.1149.1|Name=mRNA_C-linearis_contig11.1149.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3300bp|location=Sequence derived from alignment at C-linearis_contig11:62622..82692+ (Chordaria linearis ClinC8C monoicous)back to top |