mRNA_C-linearis_contig11.1147.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1147.1
Unique NamemRNA_C-linearis_contig11.1147.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:53850..54849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1147.1prot_C-linearis_contig11.1147.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 53850..54849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927424.2864637-CDS-C-linearis_contig11:53849..539011622927424.2864637-CDS-C-linearis_contig11:53849..53901Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 53850..53901 -
1690879692.960123-CDS-C-linearis_contig11:53849..539011690879692.960123-CDS-C-linearis_contig11:53849..53901Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 53850..53901 -
1622927424.3617375-CDS-C-linearis_contig11:54222..544281622927424.3617375-CDS-C-linearis_contig11:54222..54428Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 54223..54428 -
1690879692.9710279-CDS-C-linearis_contig11:54222..544281690879692.9710279-CDS-C-linearis_contig11:54222..54428Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 54223..54428 -
1622927424.3756027-CDS-C-linearis_contig11:54801..548491622927424.3756027-CDS-C-linearis_contig11:54801..54849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 54802..54849 -
1690879692.9805963-CDS-C-linearis_contig11:54801..548491690879692.9805963-CDS-C-linearis_contig11:54801..54849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 54802..54849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1147.1

>prot_C-linearis_contig11.1147.1 ID=prot_C-linearis_contig11.1147.1|Name=mRNA_C-linearis_contig11.1147.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=102bp
MTRERDGCTLLAIKSKGDKKKQNRTVARGKGRYKKTSSDVIGWGVRYAER
VQRAGEFGLCRLERRGGGRRLHASNAETTAAVKHESRRSWPWGGSASAGS
P*
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mRNA from alignment at C-linearis_contig11:53850..54849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1147.1 ID=mRNA_C-linearis_contig11.1147.1|Name=mRNA_C-linearis_contig11.1147.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1000bp|location=Sequence derived from alignment at C-linearis_contig11:53850..54849- (Chordaria linearis ClinC8C monoicous)
ATGACGAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAAATCCAAGGC
AAGCACCGCAGGAGGAAGGTGGGGCAAAAAAGAAACAGAAAAAGAAGAAA
AAAGCCCCAGTGTTTACCCCCTCCTGTGTGACCCCGGTTGGTTCTAGTTG
TACAGAAAAATACACTGAACAAGTGTAGTACTCTAAATACACCGCAACGT
GTAGTACACGTCTCGCCTTGATCGGAAAGGGACTGTCGCCAAAATAAATG
GGACGAAAACGCACACACACACACACACACACACACACACACACACACAT
AAGGGCACACGATGTCTTTTAACTTGTAAACATATCGTTTCAATTCTTCA
CAATCACTTATTATAGCTGCAGATATATCTCATTCTAACTCAACCATTGC
AATCGCGGCTTGTACGAGTAGGGTGACAAAAAAAAACAGAATCGGACCGT
TGCACGTGGGAAAGGGCGGTACAAGAAGACGAGTTCAGATGTGATCGGCT
GGGGAGTGCGCTATGCGGAGAGAGTGCAGAGAGCTGGGGAGTTCGGTCTT
TGCCGGTTGGAGCGACGGGGGGGTGGACGAAGGCTACACGCGAGCAATGC
GGAAACAACCGCAGCAGTCAAACACGAGTAAGTTGTTGGGCAAAAGGTTG
AAAAAAGGTACACACACACACACGCGCGCGCTACTTCTCAACAATCAACC
AACCGAGGGCGCCATATGGCCGACCAACCCCCATGAAATAGCATCGCCCC
CCCCACCCCCGCACAGCGCGAAGTGACCCTACACAAGACAAGACGCACGA
TACGATATTTCCAAGCATGATTTGATATGACGCTGTCTGATGTGATGAAT
TCGTAGTCATGGTATGATATGATGTGATACGATATGATACGACACCAACC
GCCGTACATACCTCTCCCCATGCGATGGTTGCCACTCCCTTGGTGTAGAT
CTCGTCGATCTTGGCCTTGGGGAGGTAGCGCATCAGCAGGTTCTCCGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:53850..54849-

>mRNA_C-linearis_contig11.1147.1 ID=mRNA_C-linearis_contig11.1147.1|Name=mRNA_C-linearis_contig11.1147.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at C-linearis_contig11:53850..54849- (Chordaria linearis ClinC8C monoicous)
ATGACGAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAAATCCAAGAT
GACGAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAAATCCAAGGGTG
ACAAAAAAAAACAGAATCGGACCGTTGCACGTGGGAAAGGGCGGTACAAG
AAGACGAGTTCAGATGTGATCGGCTGGGGAGTGCGCTATGCGGAGAGAGT
GCAGAGAGCTGGGGAGTTCGGTCTTTGCCGGTTGGAGCGACGGGGGGGTG
GACGAAGGCTACACGCGAGCAATGCGGAAACAACCGCAGCAGTCAAACAC
GAGGTGACAAAAAAAAACAGAATCGGACCGTTGCACGTGGGAAAGGGCGG
TACAAGAAGACGAGTTCAGATGTGATCGGCTGGGGAGTGCGCTATGCGGA
GAGAGTGCAGAGAGCTGGGGAGTTCGGTCTTTGCCGGTTGGAGCGACGGG
GGGGTGGACGAAGGCTACACGCGAGCAATGCGGAAACAACCGCAGCAGTC
AAACACGAATCTCGTCGATCTTGGCCTTGGGGAGGTAGCGCATCAGCAGG
TTCTCCGTGAATCTCGTCGATCTTGGCCTTGGGGAGGTAGCGCATCAGCA
GGTTCTCCGTGA
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