mRNA_C-linearis_contig11.1144.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1144.1
Unique NamemRNA_C-linearis_contig11.1144.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:12241..16857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2353
Cds size648
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1144.1prot_C-linearis_contig11.1144.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 13945..16857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.5407653-UTR-C-linearis_contig11:12240..139441622927429.5407653-UTR-C-linearis_contig11:12240..13944Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 12241..13944 -
1690879694.9730597-UTR-C-linearis_contig11:12240..139441690879694.9730597-UTR-C-linearis_contig11:12240..13944Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 12241..13944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.550115-CDS-C-linearis_contig11:13944..143451622927429.550115-CDS-C-linearis_contig11:13944..14345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 13945..14345 -
1690879694.981685-CDS-C-linearis_contig11:13944..143451690879694.981685-CDS-C-linearis_contig11:13944..14345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 13945..14345 -
1622927429.5591114-CDS-C-linearis_contig11:14790..149771622927429.5591114-CDS-C-linearis_contig11:14790..14977Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 14791..14977 -
1690879694.9899476-CDS-C-linearis_contig11:14790..149771690879694.9899476-CDS-C-linearis_contig11:14790..14977Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 14791..14977 -
1622927429.5678456-CDS-C-linearis_contig11:16797..168571622927429.5678456-CDS-C-linearis_contig11:16797..16857Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 16798..16857 -
1690879694.9984517-CDS-C-linearis_contig11:16797..168571690879694.9984517-CDS-C-linearis_contig11:16797..16857Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 16798..16857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1144.1

>prot_C-linearis_contig11.1144.1 ID=prot_C-linearis_contig11.1144.1|Name=mRNA_C-linearis_contig11.1144.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=216bp
SARAGIHQEHRITARTRLAQRQLLHDIRGDCSTSREGHIKQDLGLWSLYC
LVLLVDSLGAAERDPRCRTRRRREMSDGQDAAGRTLCVNALIVAIDTTVE
EGGRWYVSTTSLEVVCLGLCVACRSCWNIPPRKVVVSTDAPGRIWLSDKP
SGAGRVPPLPMQLTVKEWPQGVLAGISEGQRSKLPASRTRGAWQGCMRRL
CRRRSSPLGWPDAVK*
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mRNA from alignment at C-linearis_contig11:12241..16857-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1144.1 ID=mRNA_C-linearis_contig11.1144.1|Name=mRNA_C-linearis_contig11.1144.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4617bp|location=Sequence derived from alignment at C-linearis_contig11:12241..16857- (Chordaria linearis ClinC8C monoicous)
AGCGCGAGAGCCGGCATACATCAGGAACATCGAATAACGGCGCGGACGAG
GCTGGCACAGGTATCGCCCCAAAGGAAGGGAAGCAATTCGCCTCTCAACA
AAGAGTAGCCACACGGACGCGTTTCATCACCTATGCACGCGCGCGTGCGC
ATTGATCATACATACAGACTGCCACATCATACGTCTTTCGGGTGCTCACT
TGATGAAAGAGCTTCACACCATACAACTCAATCGAGCAGGGTTTATTGCG
GTGTAGGCAATGTAGGTGGTCAAATCGCCGCCCGACGATTTTTCTCCGGA
AAACGCCATCCCATGCCAGCAACGGTTGCGGGAGATTCAGCGTCACAAGC
TTAAGCTTCCTTTCCCTATGGATGCACTGCTGTAGTGGGGCTTGAGTCAT
TTTCCTTGCATTCCACAAGCCAATGCTCGACAAAGTATACACAGAAGGTG
ATCTGTACCATACACGAATCGGCGATTTACAATGTAGTCTACAAGAATTG
TTCAACAGGAACCTCTCCGAAAGGCGACGCTGCCGTATTTGGTCCTTGTA
AACATCATCTTCTGGGTCCAACCTGTAAAAGAAATCGCCCCAAGAAGACT
GTTGTAGAAGCACAAACCCTCCCTCACTGAGCAAAAACTGTGATACACAC
TCCGCTAGGGTTCGTGTGTTTGTTACGGAGCAGTTCATTTGCGGGGCATA
TGATTCATCGTATACCAGGTAGGGTATGATATCTTCCGGATATTTATTGT
TGAAAAGTGTGAACAAGCATGATGCATTGTTAAGGAACTAGCCACTCAGC
CAAGAAGGGGTAAAAGTTTAACCAAGTACCCGGCTGAGATTACATATTTT
AACCCTTTTGTGACTAGCATGTACCGACGAAGTAGCTTGAGTTTTTTTTG
GGTTAGGGTTAGTGAATGGGGGCCAGGTAGTGGTTTATCAGCAAAGAGTG
TTCAGTGTACGTGTCGGTGAGCACCGATTCAATTCAAACACACACATATT
ATCTGAGCTAGTCTACAGAAGAGGCAGCCACCAGGTTTGTGCCCACAGGG
AAATCGATGCACAGGCTTGTACATTTCCCTGTCTGGTGGTGTCAAGTGCT
AGACCTATACTCGTGGTGTGCGGTCTTGTTCATCGCAGCTGATTGGTGGA
GGTATGTGGTTGGCGGTGCGCACGCAAGCAGTTTGTCCTCCTCTATCCTC
CAGACCACAAGAAAGCCAAAAGAGCATTCATTCGTCATACGAAGTACATA
AACATATGTATGCAACAGAGACAGGGAAACGAGCGAGGCGTGTGTTTACC
CTACGCTGATCGACCCACCCCAATGCCAATGAGAGGTCATCACAAGGTCT
GCACAAGGCCTGCCACGATGGCAGGAACCCCTTCCTGGCGCTACAGACTG
GTCGGGGGGGTGTAGGTTAGAAACAAGCACCCGCTTGCAATAATAAAAAA
AAATAAAACGGGGAGGGGAACAACAGTATCTTGACCCCCGCAGTGTAGAT
GCAGGATGGTGGGGAAACCTGAGCACTTGTATCATTTTCAAAGTCACCAG
AAGATCGCCATCTGGTCTGATCTTCGACGTGAATGCCGCTCGGGGCTCTA
AACAGGAACACAGTCTTCCTGGACGAGATCTGGCTGAGAACCCATTGCCA
ATCGCAAACATCGAATTTCGGTACGATAGAGCGGCAATCCTTGTACTGTA
CTGCGAGAGTGGTCGATGCCTCTAGCTGAAAACCGTGGCCGAGTCATCGG
ATGCACTTTGCACCATAGCAGCAAGCCACACGTCATCGGTTTGTGTGTAG
TTTTGTAGTTTGCATGTTTTCTGTGACGGCAAAACGACACCTAGCTTCCC
CGTCACCTTCTCCCCTGCCCCGTCGCCAAGCGACAGCTACTGCACGACAT
CAGAGGTGACTGCAGCACCAGCAGAGAGGGTCATATCAAGCAGGACTTGG
GCCTCTGGAGCCTCTATTGCCTTGTGCTGCTGGTAGACTCTCTGGGGGCG
GCTGAGAGGGATCCACGTTGTCGCACGCGCAGAAGAAGAGAGATGTCGGA
CGGACAGGATGCCGCAGGTTAGCGTCCGTCTCGGGCGTGTGTTGGGCGTG
TAAACTTCCATGTCAGCCCTTCCCACCTCCGCTTGGTGCACTCTATATTC
TGCTTTTGCTGGTCAAGCTTGTATGGAGGCGCCTTGGTTATAGGGTTCCG
GAAAATGCGTCTACATTGTGTTTGTACATCTTACGTACCAAAACAAACCA
TCATGGTCATGTTTTTGCTTTTTTGTTCTTGCGTAGCGTGGCGGTCAGTT
CTTGTTTGCTACGTGGGGTATTCTGGCAGATGGGGCAAAGCATTGCAGTC
CCGATCTGCTCTCCTGAATATGGGCGTGAGGGACATACATTCGCCCCGCA
TTCATGTCCTTAGCTGCTCTCCGTAGAGTACGTCCTCTGGTGGTATATAG
AATCAAAACATATCCTGGCTACGTGCTTCGCATATTTTCCTCTCTTCTGC
CGATTACTGCAGGACGGACTCTATGCGTGAACGCCTTGATCGTTGCCATC
GACACTACCGTTGAAGAAGGAGGCAGGTGGTATGTTTCAACGACCTCTCT
AGAGGTGGTTTGCCTGGGCCTCTGCGTGGCTTGTCGATCTTGCTGGAACA
TTCCACCAAGAAAGGTCGTGGTATCCACCGACGCGCCCGGCAGGATATGG
CTAAGTGACAAGCCGTCTGGCGCTGGGAGGGTCCCGCCTTTGCCTATGCA
GTTGACGGTGAAGGAATGGCCACAAGGTGTTCTGGCAGGAATTTCCGAGG
GACAGCGGAGTAAGTTGCCCGCTTCGAGAACACGGGGAGCTTGGCAGGGA
TGCATGCGGCGGCTATGTCGGCGAAGGTCAAGCCCACTGGGGTGGCCGGA
CGCGGTAAAATAGCTTACATTTGGGGAGAACGTCAACCGGCCCATCGCCG
GAGTTGCGTGGCCGGCCTCGCTGCAGCAGCTATCGTTCGGCTTTGAGTTC
AATCAGCCTATCGTCGGAGCTGTGTGGCCGGCCTCTTTGCAGCAGCTATC
GTTTGGGCATAGATTCAACCAGCCCATCACTGGAGTTGTGTGGTCGGCCT
CCCTGCAGCAGCTGTCGTTCGGGTGTAATTTCAACCAATCCATCGCCGGC
GTGGTGTGGCCAGCCTCCCTCCAGCAGCTGTCATTTGAATTCAGGTTCAA
CCAGCCCATCACCGGAGTTACATGGCCAGCCAACCTGCAGAAGCTGTCGT
TCGGGTATTTGTTCAACCAGCCCATCACCGGAGTTGTGTGGCCGGCCTCC
TTGCAGCAGCTATCGCTCGGGCATAGATGTAATCAGCCCATCACTGGAGT
TGTGCGGTCGGTCTTCCGGCAGAAGCTGTTGTTCGGGTATCATTTCAACC
AATCCATCCCCGGCATTGTGTGGCCGGCCTCGCTTCTACAGCTGTCGTTC
GGGCATGCATTTGACCAGCCCATCACCGGAGTTACATGGCCAGCCAAACC
TGCAGAAGCTGTCGTTCGAGTATTTGTTCAACCAGCCCATCACCGGAGTT
GTGCGGCCGGCTTCCCTACGGCAGCTGTCGTTCGGGTTTGGCTTCGATCA
GCCCATCACCAGAGTTGTGTGGTCGGCCTCCTTGCAGCAGCTGTCATTCG
GGCGGTTGTTTAATCAGCCAATTGCTGACGTAGTGTGGCCGGCGTCGCTG
CTACAGCTATCATTCGGGTATTGGTTTTGCCGCCCCATCACTGGAGTTGT
GTGGCCGGCCTCACTGCAACAGCTATCGTTCGGGGAAAGGTTCAACCAGC
CCATCACCAGAGTTGTGTGGCCGGCCTCCCTGGAGCAGCTGTCGTTCGGG
GAACACTTCAACCGATCGATCGCCGGAATTGTATGGCCGGCGTCCCTACG
ACACGTGACCCAGTCCGGAGCAAATCTGCTCTGAAAGCGTTCGGATCGTA
CTCTGGAAGTCGAACTCCGATAAGAGCAAATGCGGGTGATGAGTGAGGGG
GGCTATCAGGTGCTGAGGTGGCGTCGTTTCCTGGCGGCGAGTTCTGCTGG
CAAAGACGATGCAATGATAACCGGTGTGTACACGAAGAGCACAGCTTTAC
TGGGTAAATGCCGTTCCGCCCTGAATCCAACCCAACGGCACAAACAAAGG
GATCCTTATTCTTCACCTGCGTAGATATCTCTCATATCCCCCCACCCCAG
AGAGCTGACGAGGCAAAACATTGAAATCTGGCCGTCAGTGTTAGTCTTGG
ACACGTGGGGGATGCTATTGTTGCTGGACTGTTGCTCGGGCGTGTGGACA
ATGTTGGTGTGTAAGGCAAAGAAGGTGTACTCGGAATGTCGGCTTCCACA
AGTTGATGGTTCTATTGGAGTCGAGTGAAGGCCGAAAGAGGGGATCCACT
CCTCACGGGGACCTCACCCCCCTTTCATGGCGGTTTCTCTGCAGCGTAAT
CACGAGACCGAGTGCAAATATCTTGTGGACTGCAGTTTTCTTCGAACACA
ACATACTCCTGAGCCGGCTTGTCTTCGATACTCCCATGGGATGGATACAA
AACGCGGCCGTGTTTGAATTTGGAGCTGCCGCATTATTTACTGGTCTGCT
ACACCCACACACTGCTG
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Coding sequence (CDS) from alignment at C-linearis_contig11:12241..16857-

>mRNA_C-linearis_contig11.1144.1 ID=mRNA_C-linearis_contig11.1144.1|Name=mRNA_C-linearis_contig11.1144.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at C-linearis_contig11:12241..16857- (Chordaria linearis ClinC8C monoicous)
AGCGCGAGAGCCGGCATACATCAGGAACATCGAATAACGGCGCGGACGAG
GCTGGCACAGAGCGCGAGAGCCGGCATACATCAGGAACATCGAATAACGG
CGCGGACGAGGCTGGCACAGCGACAGCTACTGCACGACATCAGAGGTGAC
TGCAGCACCAGCAGAGAGGGTCATATCAAGCAGGACTTGGGCCTCTGGAG
CCTCTATTGCCTTGTGCTGCTGGTAGACTCTCTGGGGGCGGCTGAGAGGG
ATCCACGTTGTCGCACGCGCAGAAGAAGAGAGATGTCGGACGGACAGGAT
GCCGCAGCGACAGCTACTGCACGACATCAGAGGTGACTGCAGCACCAGCA
GAGAGGGTCATATCAAGCAGGACTTGGGCCTCTGGAGCCTCTATTGCCTT
GTGCTGCTGGTAGACTCTCTGGGGGCGGCTGAGAGGGATCCACGTTGTCG
CACGCGCAGAAGAAGAGAGATGTCGGACGGACAGGATGCCGCAGGACGGA
CTCTATGCGTGAACGCCTTGATCGTTGCCATCGACACTACCGTTGAAGAA
GGAGGCAGGTGGTATGTTTCAACGACCTCTCTAGAGGTGGTTTGCCTGGG
CCTCTGCGTGGCTTGTCGATCTTGCTGGAACATTCCACCAAGAAAGGTCG
TGGTATCCACCGACGCGCCCGGCAGGATATGGCTAAGTGACAAGCCGTCT
GGCGCTGGGAGGGTCCCGCCTTTGCCTATGCAGTTGACGGTGAAGGAATG
GCCACAAGGTGTTCTGGCAGGAATTTCCGAGGGACAGCGGAGTAAGTTGC
CCGCTTCGAGAACACGGGGAGCTTGGCAGGGATGCATGCGGCGGCTATGT
CGGCGAAGGTCAAGCCCACTGGGGTGGCCGGACGCGGTAAAATAGGACGG
ACTCTATGCGTGAACGCCTTGATCGTTGCCATCGACACTACCGTTGAAGA
AGGAGGCAGGTGGTATGTTTCAACGACCTCTCTAGAGGTGGTTTGCCTGG
GCCTCTGCGTGGCTTGTCGATCTTGCTGGAACATTCCACCAAGAAAGGTC
GTGGTATCCACCGACGCGCCCGGCAGGATATGGCTAAGTGACAAGCCGTC
TGGCGCTGGGAGGGTCCCGCCTTTGCCTATGCAGTTGACGGTGAAGGAAT
GGCCACAAGGTGTTCTGGCAGGAATTTCCGAGGGACAGCGGAGTAAGTTG
CCCGCTTCGAGAACACGGGGAGCTTGGCAGGGATGCATGCGGCGGCTATG
TCGGCGAAGGTCAAGCCCACTGGGGTGGCCGGACGCGGTAAAATAG
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