mRNA_C-linearis_contig11.1142.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1142.1
Unique NamemRNA_C-linearis_contig11.1142.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1142.1 vs. uniprot
Match: D7FMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.500e-23
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    4 VKRLKTLLSKSQKSSHSKDADLAALKAPPPPPKAFTVVLRVRYDGSTWCLLRSTQV 171
            VKRLK+LLSK QKSSHSKDADLAALKAP PPPKAFTV LRVR++GSTWC +++TQ+
Sbjct:    2 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQM 57
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BLAST of mRNA_C-linearis_contig11.1142.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.290e-20
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 VKRLKTLLSKSQKSSHSKDADLAALKAPPPPPKAFTVVLRVRYDGSTWCLLRSTQ 168
            VKRLK+LLSK QKSSHSKDADLAALKAP PPPKAFTV LRVR++GSTWC +++TQ
Sbjct: 1171 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ 1225
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMD5_ECTSI1.500e-2380.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSR4_9PHAE2.290e-2081.82GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2222..2392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.423175-CDS-C-linearis_contig11:2221..23921622927429.423175-CDS-C-linearis_contig11:2221..2392Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2222..2392 +
1690879694.9202309-CDS-C-linearis_contig11:2221..23921690879694.9202309-CDS-C-linearis_contig11:2221..2392Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2222..2392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1142.1prot_C-linearis_contig11.1142.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2222..2392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1142.1

>prot_C-linearis_contig11.1142.1 ID=prot_C-linearis_contig11.1142.1|Name=mRNA_C-linearis_contig11.1142.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=57bp
QVKRLKTLLSKSQKSSHSKDADLAALKAPPPPPKAFTVVLRVRYDGSTWC
LLRSTQV
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mRNA from alignment at C-linearis_contig11:2222..2392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1142.1 ID=mRNA_C-linearis_contig11.1142.1|Name=mRNA_C-linearis_contig11.1142.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at C-linearis_contig11:2222..2392+ (Chordaria linearis ClinC8C monoicous)
CAGGTGAAGCGGCTGAAGACTCTGCTCTCCAAGTCTCAGAAGTCGAGCCA
CAGCAAGGACGCCGACCTCGCCGCGCTCAAGGCGCCGCCCCCGCCACCCA
AGGCCTTTACGGTCGTCCTGAGGGTGCGGTACGATGGCAGCACTTGGTGC
CTCCTACGCTCGACGCAGGTA
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Coding sequence (CDS) from alignment at C-linearis_contig11:2222..2392+

>mRNA_C-linearis_contig11.1142.1 ID=mRNA_C-linearis_contig11.1142.1|Name=mRNA_C-linearis_contig11.1142.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at C-linearis_contig11:2222..2392+ (Chordaria linearis ClinC8C monoicous)
CAGGTGAAGCGGCTGAAGACTCTGCTCTCCAAGTCTCAGAAGTCGAGCCA
CAGCAAGGACGCCGACCTCGCCGCGCTCAAGGCGCCGCCCCCGCCACCCA
AGGCCTTTACGGTCGTCCTGAGGGTGCGGTACGATGGCAGCACTTGGTGC
CTCCTACGCTCGACGCAGGTACAGGTGAAGCGGCTGAAGACTCTGCTCTC
CAAGTCTCAGAAGTCGAGCCACAGCAAGGACGCCGACCTCGCCGCGCTCA
AGGCGCCGCCCCCGCCACCCAAGGCCTTTACGGTCGTCCTGAGGGTGCGG
TACGATGGCAGCACTTGGTGCCTCCTACGCTCGACGCAGGTA
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