mRNA_C-linearis_contig109.1135.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1135.1
Unique NamemRNA_C-linearis_contig109.1135.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig109.1135.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.370e-51
Identity = 82/126 (65.08%), Postives = 94/126 (74.60%), Query Frame = 1 
Query:    1 FENGAVLHYHFAHREHNKDIDDALKSHGTELSDYDAVFANPGNRPQMKARHVLREAGALKEAGVPFFWLSAYEGHGDVLNWDPEQQEAFWDSGASFVPVHRMVENLTYLTRGVVENEGNHHFCLPG 378
            F+NGA +HYHFAH+E NK  +DAL+  GTE S YDAV  N GN P+M+   VLR A  LKE GVP FW SAYEG GDV  W PE+Q  FWDSGA FVPVHRMV++L YLT+GVVE E N HFC+PG
Sbjct:  272 FDNGAAIHYHFAHKEENKRFEDALQYRGTEYSSYDAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVKSLKYLTKGVVEGENNPHFCMPG 397
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BLAST of mRNA_C-linearis_contig109.1135.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.800e-50
Identity = 82/126 (65.08%), Postives = 92/126 (73.02%), Query Frame = 1 
Query:    1 FENGAVLHYHFAHREHNKDIDDALKSHGTELSDYDAVFANPGNRPQMKARHVLREAGALKEAGVPFFWLSAYEGHGDVLNWDPEQQEAFWDSGASFVPVHRMVENLTYLTRGVVENEGNHHFCLPG 378
            F+NGA +HYHFAH+E NK  +DALK  GTE S YD V  N GN P+M+   VLR A  LKE GV  FW SAYEG GDV  W PE+Q  FWDSGA FVPVHRMVE+L YLT+GVVE E N HFC+PG
Sbjct:  268 FDNGAAIHYHFAHKEENKRFEDALKYRGTEYSFYDVVVGNLGNDPRMEVSEVLRVANLLKEEGVTLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGENNPHFCMPG 393
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BLAST of mRNA_C-linearis_contig109.1135.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.460e-34
Identity = 71/130 (54.62%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    1 FENGAVLHYHFAHREHNKDIDDALKSHGTE-LSDYDAVFANPGNRPQMKARHVLREAGALKEAGVPFFWLSAYEGHGDVLNWDPEQQEA-FWDSGASFVPVHRMVENLTYLTRGVVEN--EGNHHFCLPG 378
            F NGAV+H++FA+R+ +K I DAL  H  E  S Y AVFANPGN+P ++A  VL  A  L+ AGVPFFWLS YEG GD   W+  Q+E  F  SGA FV V  MV+ L  LTR VVE   E + HFC+PG
Sbjct:   36 FSNGAVVHFYFANRDEDKRITDALAPHDKEDFSYYTAVFANPGNKPSVEADAVLDAAFELQAAGVPFFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVVERTVEDDPHFCMPG 165
[Close]
BLAST of mRNA_C-linearis_contig109.1135.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.180e-33
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:    7 NGAVLHYHFAHREHNKDIDDALKSHGTE-LSDYDAVFANPGNRPQMKARHVLREAGALKEAGVPFFWLSAYEGHGDVLNWDPEQQEA-FWDSGASFVPVHRMVENLTYLTRGVVEN--EGNHHFCLPG 378
            NGAV+H++FA+ + +K I DAL  H  E LS Y AVFANPGN+P ++A  VL  A  L+ AGVPFFWLS YEG GD   W+  Q+E  FW+SGA FV V  +V+ L  LTR VVE   E + HFC+PG
Sbjct:  304 NGAVVHFYFANHDEDKRITDALAPHHKEDLSYYTAVFANPGNKPSVEADAVLDAAVELQAAGVPFFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERTVENDPHFCMPG 431
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2P7_ECTSI1.370e-5165.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUF6_9PHAE3.800e-5065.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G974_ECTSI1.460e-3454.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAG2_9PHAE1.180e-3354.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:472324..473758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size396
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1135.1prot_C-linearis_contig109.1135.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 472324..473758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927423.0156736-CDS-C-linearis_contig109:472323..4724671622927423.0156736-CDS-C-linearis_contig109:472323..472467Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 472324..472467 +
1690879692.3277955-CDS-C-linearis_contig109:472323..4724671690879692.3277955-CDS-C-linearis_contig109:472323..472467Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 472324..472467 +
1622927423.0274022-CDS-C-linearis_contig109:472954..4731431622927423.0274022-CDS-C-linearis_contig109:472954..473143Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 472955..473143 +
1690879692.3389142-CDS-C-linearis_contig109:472954..4731431690879692.3389142-CDS-C-linearis_contig109:472954..473143Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 472955..473143 +
1622927423.0402668-CDS-C-linearis_contig109:473695..4737581622927423.0402668-CDS-C-linearis_contig109:473695..473758Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 473696..473758 +
1690879692.3496778-CDS-C-linearis_contig109:473695..4737581690879692.3496778-CDS-C-linearis_contig109:473695..473758Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 473696..473758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1135.1

>prot_C-linearis_contig109.1135.1 ID=prot_C-linearis_contig109.1135.1|Name=mRNA_C-linearis_contig109.1135.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=132bp
FENGAVLHYHFAHREHNKDIDDALKSHGTELSDYDAVFANPGNRPQMKAR
HVLREAGALKEAGVPFFWLSAYEGHGDVLNWDPEQQEAFWDSGASFVPVH
RMVENLTYLTRGVVENEGNHHFCLPGTYGAE*
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mRNA from alignment at C-linearis_contig109:472324..473758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1135.1 ID=mRNA_C-linearis_contig109.1135.1|Name=mRNA_C-linearis_contig109.1135.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1435bp|location=Sequence derived from alignment at C-linearis_contig109:472324..473758+ (Chordaria linearis ClinC8C monoicous)
TTCGAGAACGGAGCGGTTCTCCACTACCACTTCGCGCACAGGGAGCACAA
CAAGGACATCGACGATGCCCTGAAGTCGCACGGGACCGAGTTGTCGGACT
ACGACGCCGTCTTTGCCAACCCCGGCAACCGCCCGCAAATGAAGGTACCT
TCCCACCTTAAACGCACACCCCCCCGTGTGAGAGAAAAAGTTCAGATCAA
GGGGCGCGTGGGGGGGAGGATGCCTACTACTACTACTGTGATTCAACAGG
GAATCGAGGGGTCGTGGGTTCTCAAAGTAGAACGTGTCTGGCTTGGTCTA
GATGGCCCACACCAGACCAGCTGGATCAAGAATGATTTAGGCTTGCTGGG
AATGAGTAAGGAAGAACACAATCAGTCTTCTGCTTGAGCCGCTGGTGCTT
TTTTCCGACATAGTTACCCATCTTGAAGCCAGGTCCAGCAAAAGGGACTA
TTACTATATGCAAGTAGTAATATAAATGGGGCAGTCTGTCTGGTACGTAC
GTACGTAGTTGTGCCGTGGACGAACGCCTTGTTTCCGAACGACGTCATTG
ACACCCGCAATCAATAGGAACAGTAGCCAGCCCGTATACCACAAATAAAC
CATACCAACCCATCTACTAAAACAACAACAGGCACGACATGTTCTACGAG
AAGCCGGCGCGCTGAAGGAGGCGGGAGTTCCCTTTTTCTGGCTGTCCGCC
TACGAGGGGCATGGAGATGTCCTCAACTGGGACCCAGAGCAGCAGGAGGC
GTTCTGGGACTCCGGAGCGTCCTTCGTTCCGGTACACCGGATGGTCGAGA
ACCTCACGTACCTCACCAGGGTAGGTGTGGAGCGTTGACTTTACGTGGCG
TCGGCATGTATGCTCGCTCGTCGGTGTTTATCTCCGGTTCGTTCCGCGAA
GTGAAAGCCAAAGCCAAAACCAACTCTCCCTGTTCCTTGACGCTCTCCGC
ACTTTGGTCGAACCACCGGAAGGCGGATCGATCCATGCTCCGATTGTTTC
CGGTTCGTCCCAATAGATAGAGTAAAATCCAACCGAAAGGCGGATCGATC
CATGAGGTTCCGTTTTGTTTTGGTGCGCTCCGTTTGTTGCCATCAACTAA
TAATGTTCAACACTTACATTGCTTGCGTCATGTATGAAAACCCGCACGAA
AACAAATAAAAATATAAAATGTGCTCATATGCCCGGCCTGAGGCCCCCTC
CTCCGTGGACCTTCTTCGCGGATTCAGAACATGGTACCGAAATATCATGC
AAGACAACACCGACGACGATCGCCCCTCCCTCCCTGTTACACCCACCAAC
CACAACCACCCCCCCGCCCGTCTACCCCTGCCTGTCTGTGTCGATTGGGT
GGCTGTTCAATGGCCGGGAAAGGGAGTCGTGGAGAACGAGGGCAACCATC
ACTTTTGCTTGCCAGGTACGTACGGAGCCGAGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig109:472324..473758+

>mRNA_C-linearis_contig109.1135.1 ID=mRNA_C-linearis_contig109.1135.1|Name=mRNA_C-linearis_contig109.1135.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at C-linearis_contig109:472324..473758+ (Chordaria linearis ClinC8C monoicous)
TTCGAGAACGGAGCGGTTCTCCACTACCACTTCGCGCACAGGGAGCACAA
CAAGGACATCGACGATGCCCTGAAGTCGCACGGGACCGAGTTGTCGGACT
ACGACGCCGTCTTTGCCAACCCCGGCAACCGCCCGCAAATGAAGTTCGAG
AACGGAGCGGTTCTCCACTACCACTTCGCGCACAGGGAGCACAACAAGGA
CATCGACGATGCCCTGAAGTCGCACGGGACCGAGTTGTCGGACTACGACG
CCGTCTTTGCCAACCCCGGCAACCGCCCGCAAATGAAGGCACGACATGTT
CTACGAGAAGCCGGCGCGCTGAAGGAGGCGGGAGTTCCCTTTTTCTGGCT
GTCCGCCTACGAGGGGCATGGAGATGTCCTCAACTGGGACCCAGAGCAGC
AGGAGGCGTTCTGGGACTCCGGAGCGTCCTTCGTTCCGGTACACCGGATG
GTCGAGAACCTCACGTACCTCACCAGGGCACGACATGTTCTACGAGAAGC
CGGCGCGCTGAAGGAGGCGGGAGTTCCCTTTTTCTGGCTGTCCGCCTACG
AGGGGCATGGAGATGTCCTCAACTGGGACCCAGAGCAGCAGGAGGCGTTC
TGGGACTCCGGAGCGTCCTTCGTTCCGGTACACCGGATGGTCGAGAACCT
CACGTACCTCACCAGGGGAGTCGTGGAGAACGAGGGCAACCATCACTTTT
GCTTGCCAGGTACGTACGGAGCCGAGTGAGGAGTCGTGGAGAACGAGGGC
AACCATCACTTTTGCTTGCCAGGTACGTACGGAGCCGAGTGA
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