mRNA_C-linearis_contig109.1134.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1134.1
Unique NamemRNA_C-linearis_contig109.1134.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig109.1134.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.190e-34
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 DISGSWDTENLVSPPFDCTCTTLKANYHCPNLGKDGYPKWNPPAVSSGSCKPKDMKTLKQEPFPPGFKVLFFGNSHIRQVVQSILCTFPGAIQTRWL 291
            D+SG WD  ++V+PPFDCTC TLKA+Y CPNLG  GYPKWN    +SG+C+ ++   L+ EP PP F+VLF+GNSH+RQVV+ I+C +  +I++R L
Sbjct:  115 DLSGMWDKSSMVAPPFDCTCRTLKASYFCPNLGTGGYPKWN----TSGACERRERSALQNEPLPPAFRVLFYGNSHLRQVVEGIVCAYSTSIRSRCL 207
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BLAST of mRNA_C-linearis_contig109.1134.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.510e-31
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:    1 DISGSWDTENLVSPPFDCTCT-------TLKANYHCPNLGKDGYPKWNPPAVSSGSCKPKDMKTLKQEPFPPGFKVLFFGNSHIRQVVQSILCTFPGAIQTRWLTLEGDTSEVAWRPDVV 339
            D+SG WD  ++V+PPFDCTC+        L A+Y CPNLG  GYPKW+    +SG C+ ++   L+ EP PPGF+VLF+GNSH+RQVV+ I+C +  +I++R L +  D   +A    +V
Sbjct:  112 DLSGMWDKSSMVAPPFDCTCSGSGRAGRALNASYFCPNLGTGGYPKWS----TSGGCERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGESLAQEDTLV 227
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BLAST of mRNA_C-linearis_contig109.1134.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.250e-19
Identity = 46/120 (38.33%), Postives = 62/120 (51.67%), Query Frame = 1 
Query:    4 ISGSWDTEN--LVSPPFDCTCTTLKANYHCPNLGKDGYPKWNPPAVSSGSCKPKDMKTLKQE--PFPPGFKVLFFGNSHIRQVVQSILCTFP--------------GAIQTRWLTLEGDT 309
            +S  W      +  PP+ C C   KA Y CPNLG   YP+W P AV+ G C+    + +     PFPP  KVLF+GNSH+RQ +++ILC F                A +T +L + GDT
Sbjct:  138 LSSEWSQGQGGVWKPPYGCDCAFSKARYFCPNLGSGVYPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQTLEAILCLFQKDVVSKRLRFVSATNANETAYLEVPGDT 257
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BLAST of mRNA_C-linearis_contig109.1134.1 vs. uniprot
Match: A0A835Z986_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z986_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.030e-12
Identity = 36/85 (42.35%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   10 GSWDTENLVSPP-FDCTCTTLKANYHCPNLGKDGYPKWNPPAVSSGSCKPKDMKTLKQEPF-PPGFKVLFFGNSHIRQVVQSILC 258
            GSW+       P +DC+C   KA YHC        P W P A+  G C+      L   P  PPG +VLF GNSH+RQ+V+S LC
Sbjct:   57 GSWEQRTAHQEPLYDCSCPLAKARYHCHEFNAVDGPVWVPRALVKGECR-----ALPHNPLVPPGARVLFAGNSHMRQLVESGLC 136
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KUF6_9PHAE8.190e-3455.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2P7_ECTSI2.510e-3145.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAG2_9PHAE2.250e-1938.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z986_9STRA5.030e-1242.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:465723..471693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003000.1
Exons3
Model size341
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1134.1prot_C-linearis_contig109.1134.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 465723..471692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927422.9612107-CDS-C-linearis_contig109:465722..4657991622927422.9612107-CDS-C-linearis_contig109:465722..465799Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 465723..465799 +
1690879692.2973607-CDS-C-linearis_contig109:465722..4657991690879692.2973607-CDS-C-linearis_contig109:465722..465799Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 465723..465799 +
1622927422.9710803-CDS-C-linearis_contig109:470775..4709351622927422.9710803-CDS-C-linearis_contig109:470775..470935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 470776..470935 +
1690879692.3112798-CDS-C-linearis_contig109:470775..4709351690879692.3112798-CDS-C-linearis_contig109:470775..470935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 470776..470935 +
1622927422.983156-CDS-C-linearis_contig109:471590..4716921622927422.983156-CDS-C-linearis_contig109:471590..471692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 471591..471692 +
1690879692.3193386-CDS-C-linearis_contig109:471590..4716921690879692.3193386-CDS-C-linearis_contig109:471590..471692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 471591..471692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1134.1

>prot_C-linearis_contig109.1134.1 ID=prot_C-linearis_contig109.1134.1|Name=mRNA_C-linearis_contig109.1134.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
DISGSWDTENLVSPPFDCTCTTLKANYHCPNLGKDGYPKWNPPAVSSGSC
KPKDMKTLKQEPFPPGFKVLFFGNSHIRQVVQSILCTFPGAIQTRWLTLE
GDTSEVAWRPDVV
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mRNA from alignment at C-linearis_contig109:465723..471693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1134.1 ID=mRNA_C-linearis_contig109.1134.1|Name=mRNA_C-linearis_contig109.1134.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5971bp|location=Sequence derived from alignment at C-linearis_contig109:465723..471693+ (Chordaria linearis ClinC8C monoicous)
GACATCTCAGGCTCGTGGGACACGGAGAACCTGGTCAGCCCGCCGTTTGA
CTGCACCTGCACGACGCTCAAGGCCAAGTATGTATGTAGATGCAGGAGTG
ACGTGCTTGAAACCGTGTGGCTGAACTGGCGGCATCATATATATGTTGCA
TGTATATTATTCGAGCAAAGCGAGTTTCTAATCTCGGTCTGGGTGATTTC
CACCGCAGGTTCAAAGGGCTCATCATCACGAACAAAATTGTTTGTACATC
TGTTTGTCTGCAATCAGACTTGATTTTGGTGTAGCTGGCGTGGTTTTAGA
CTACCAGGCATCTTCAGACCACGTGATCGGACAAAAACACACAACAAACA
AACCTCCGGTCAAAACTAAGCTATACGACTACGACAACAACGGAGGTGCA
GGCATCATCATCACTGATGCCGGCGGAAAAGCTGGCATCAGCATAGGATC
ACACGCGGGGTCAGTAACGGGCGCATGAACCTTTACTTCTGGGCTTGCTG
CTGCCGTTGGTCTCGCTTGACCGGCGAGCACGAGCCTATCGAGAAAGCCA
ACTTGCGCCAACTCAGTTTGTGAGCGATGGAGAGAGAGAAGAAAAGTCAG
ACACAACAGAGGCACACAGAATAACAGAGACGCAGCATCGCGTCGGATAT
GAGCCCAAATCCTCCGACACAGCCCCTCTGGGCTCTCGATGCCGCCAGGA
ACACACCGCTGTGTGCTTGGGAGAGAGAGTCCGGCCACACCATGCAGGGA
CTCTGTCATGTGTGTGTGTATTTGTGTATGTTTGTGCGGACCATGTGCAG
ACCAACAAGCAAGCTTTTTTTTTCTTTTTTTCCGATGAGATGGATCTACT
CCTCCTGTACGATAGGAGGGGGTAAACACTGCTGGGGCTTTTTTCTTCTT
TTTCTGCTTCTTTTTTGCCCCACCTTCCTCCTGTGGTGCTTGCCTTGGAT
TTTGTCGCGAGAAGGGTGCAGCCATCCCTTTCCCTCGTCAACGTGCTAAT
ATGTCGAAGTTTGGTACTCACGAGCTTTTTCAGCTATTTTTATTGTCTAT
ATCGCTTTCACCGGCAAAGTCGCGAAATAGTCACCTTTGCTTGGAATTGA
ACTCCAGACTTTGCTGCTAGTGGGTTCGAGGTTAAACCACTACTACTCCG
GAGCCGAGTATTAATTAATAGGCCACTGGGGCGACCGGCTGTATGCTTTC
TTCGAAAGAGAGTTGCTTTCATCTGCCGTTCATGTATGTATGCGGAATGT
GTGCAGATAGATGATGATATCACACTATTTAGCAGGGATGTTAGTATCCG
CGATTCAGCAGGGTACCGACCGGATAATAACCGCTCTGGCCGGGGACAAA
AAAATCCTTTCCCCGCGGTGGTATTCAACGTATACTTTTGATGTATTGTT
CGCTGTTGCTGCTGTTGTTGTTGTTGTTGCTGGTGTGACAACCGTGAACA
GCGCAAGGAGGGCTGCGCGGTCTCCAGGTTCACCCGAGAGTGCTGGCCCC
AGAGCAGATACTGAAGAGGGCATGTCTTTATGGCGGTCTGTCTGCTGTGT
GGGTAATGGGTAGAGTGTTTCAGTGTTTGGTCTCCTGCTGTCTGCTGCTG
TGAGCTGAGCTGAGAGGGGGCACTTCAGAGAAAAGTATACCCCACGCCGC
TCCCTCCGCAGGCCCCCCCGGATATACGGAAAATAACCGCTATTTTCCAA
AGGTAGACCGGTCGCCCCGGTGCACTAGTGGTTTAACCTCGAACCCACTA
GCAGCTTAGTCTGGAGTTCAATTCCAAGCAAAGGTGATTATTTCGCGACT
TTGCAGGTGAAAGCGATAACATAGATAGCTGAAAAAGCTCGTGAGTACCA
AACTTCGACTTAGCACGTTAACGAGGGAAAGAGATGGCTGCACCCTTCTT
GCGATAAAGTCCAAGGCAAGCACCGCAGGGGGAGGAAGGTGGGGCAAAAA
AAGAAACTGAAAAAGATAAAAAAAAAAGCCCCATTGTTTTGTCAAGCACA
AGCTCTGTGCAGCGGTAGCTCAACAGCGGTGGTGCTGTCGAAATCTACAC
AGACGCGTGTGTCTGTTGCGAGAGGTGTACACTTGGGCACGGAGGTAACT
CGGTGTGTGCCTCGGATCGAAGAGATGAAGATGTTGAATTACTGACTGAC
TCCTTGGTCAGGTTTCCTTGGGTAGTGAAGAGGAGTGAGAGAGGTGGGCG
CGTGGGCGCGTGCATCTCAGAGCTCCAAATACTAAATAAACAGAAACGCA
CCAAAACAATTTCCAGGGATGGATCCTGGTACCAAGGCCCTAGTTAGACC
CTAGTTTCTGCTTGACAAAGCAGGGTCCTTCCGGGTTATTCCGGGAGGTT
CTAAATATCTCGGCTCTTTGCTACGTGCTACGTTCTTATTCTGAGATACA
GCTGCTTGCTGCCTACGGTACTGTTTTCTGTTTGCACCTACATCTTGCAC
CTACAGCAGTACTTCTGTCTTATGTACGCACTCACTCTCTCGTCGTGTTA
CTGAAATCGAAACACAAAGAAAGAAAGATACAACTTGTGTCTACGTCGCA
CATTGTTCTGACATGTTTACCCCCTCCTGTGTGACCCCATGATATTATCC
AGAGCCTTGTGTGTTTACGTCCATAAAGTATATACGAAGTATATATATAA
TATATATATTATTTTCTCAAAAAATAATTATTATTGTTGTTAGTTGTAGC
CGGTCGCCCCGGTGGACTACTAGTGAACCCACTAGCAGCAAAGAAAGTCT
GGAGTTCAATTCCAAGCAAAGAAAGGTGATTATTTTGCGACTTTGCCGGT
GAAAACGATAACAACAACAACATAGTAGTAGTAGCTGAAAAAGCTCGTGA
GTCCCAAACTTCGACTTAGCACGTTGACGAGGGAAAGGGATGGCTGCACC
CTTCTCGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAA
AAAAGAAACAGAAAAAGAAGAAAAACGCCCCACCCAGTGTTTGTTTACCC
TCTCCTGTGTGACCCCGGTTGGTTCTAGTCGTACAGAAAAATACACTGAA
CAAGTAGTAAGTGTAGTACTCTAAACACCGCAACGTGTAGTGCACGTCTC
GCCTTGGTCGGAAAGGGACTGTCGCCAAAATAAATGGGACGAAAACACAC
ACACACACACACACACATACTACGAGAATCGTCTACCTGGTACATAAATA
ATGGCCTGTTAGAAATCCGAGTCCAATCCTCCTCAGCCAATATGCAATTC
TACGACCCAACCAAAGTCCTTCAGTGAGGTGATATCGTCGGTGGTTTGGG
ATAGATACAGTTAGTCGACGACCCCGCTTTCAAGACACTAAAAATCTCAG
AGGCAGGGTGGCGCGCAGATATTATACAATATGATAGGAGATGTATGATT
TTCATCATGCGGGACCCCCCCGAAATAAATGCTACTGCAGCACACCTGTA
CAACTGCGCAGAGAGCTGTCTGTTGCTGCCGCCGCCCCTGCGTGTGGGCG
GGTTAGAGTTCTCGTTACATGTTTATTCGGAGGACGTTTTTTTTTTTTGC
ACTCACTCCTCTACAGGGTACAAATAATAGTCAATCATGTTGTTTGTTGT
GTGTTTTAGTATTATTTGGTCCGTTTTAACTACGTACGGTAGTTTGTTTG
TGTGTTCTGCGTGGTTTTGACGTTTTGGGCAGGAGCGACGGGCTCTATAT
TTTTTGTCGTGTTCTGTTCTAACAGAGTTTTCGCCTGATTGAGAGCGAAG
TTTCCGATTGAGAGCGAGAACCAAAAAAAATGAAAATTCGGGTCCGGACG
CCTCTCGTCATTTCTCGGGAAGTAGGGGACGGGCTCTTCCAAGAAGCGGC
GCAAATTGAAGGTCTCCTCAGCAGCGTCGCGTGCATATTATGCATCTCAT
CGCCATCGGCTGCTGCAGCCAGGAGCTACACAAGTTGCTAGATTTCTCCA
GATTGGCTATTTCTGCCTGAAACTGTTTCAGGGCGCTGTCGCCTGGCGCG
GTGGGCTCTGCTGTAGCTTCTGCTCCGCGGTGTAGCTCCACAACCCGTGA
CTCTCACAGGATGACCAGGGTATCGGCTTGTAGCTATGGGCAAGGCCTTC
ACTTCAAGTCGCACAGCAAGCTGCCTCTCAGCAGTAGACCAGCTACATCG
CATCGCACAATCTCGCTCTCAATCCGATACCTCACTCTCAATCAGGCGAA
TGTGTTGTTTTCTGTCCCTGTTTGGAAGGCAGCCTGTGGTTGGGTGTGTT
GCATCAGCATTGCAACAACGTTGTTTGTTTTTGTTTTCGAGGTGGTGACG
ATATCTCGACAAGATTTCAAGATTTTCAACGTGAGGACATCGCGAAAACC
ATAACAAAGCCAACACATGTTGCTACAGCAGCAGCATCGGTTGCCGCGGC
GGCAGCAGCAGAGCAGCAACGCACTGCTGTAATGAAAAACTCTCGTCCTG
CAGCACCTCTCTCTGTTGTTGTTGTTGGAAGACGCTCATCATGTGAATGA
ATTGATCGGGTGTTACACAAACACCGTGTGTGTAATAAGTACGTGCGAAT
TTCGCCTCTTACTTGCCATGTTGTGATCGTCAGGTGTATGTTGTTTTCGG
TTCGTGCTACCCCTGCTGCAATTACGCGTCTTTTGACGTATGTACGCCTC
CGTTGACCCACCACGGGACGACGGTGAGTTATTGTCCCCGGAATCTTAAA
GACACCTTCCCCGCGGTCAAGACACTTACTTTTGAAAAATACTTCGTATG
TTATTATGTGTGTGTGTGTCTTTAAAGCGGGGCCGACTGCAATGGCGGGG
TCCTTACAACTGCTGTGAGCTTTCGAAGCTTGAAGCCAACCAAGTACATA
ATAATGTCTTCACACATGCTATGAATTTATTGACATATTTTGTACCGTCG
ACGAAGATGAAGTACAATAGATCAAGAAATGCGTGCCTGCCTGTTGTTGT
AGTATTTCTCGATTTTTTTCTGTTCCTGTGCCGTGTAGCTTCCGTCCCCT
GTCCTGCTTTCCTGCCGTTTCACCCATCACCCCCCATCATGCGCCACTCG
CAGCTACCACTGCCCTAACCTGGGTAAGGATGGGTACCCGAAATGGAACC
CTCCAGCCGTATCAAGCGGCTCCTGCAAACCAAAGGACATGAAAACGCTC
AAGCAGGAGCCGTTCCCACCGGGGTTCAAGGTCCTCTTCTTCGGCAACTC
GCATATCCGACAGGCAAGCGTTGCCCGCCCCACACCTCGCGTCTCCCTGG
CCCGCAAAAATGCAAAATCAACTACGCGTGCATCTCTAGAGTAAATTGCT
TGTAATTTAGCGCGTAGCCCTGGGTGGTGATTTTCTAGAATGATTGTAGA
GGTGGTCCGGGTCAAGAATGAAATACAAGAATGATCCCAAAAAGAGGCCT
GGCTATAGTATACCTGTTGTTGTTCTTGAAGAATGGTCGCTCTTTTGAGC
AATCCGCCCAAAAGAACATCCCCTCAGTATCTACGTGGGTTGTGTTTCTC
GGTGCTTCGCCTGTCTGCATGATGAATATTGAATAGCCCTTGAGGTTTTG
CCAGTTCGGGATTGCTTGTGCGGGGGTCGACGCCAGAGTGACGGCGAGCA
TAATAACTGCTTGCTGTCAATCAATGATCAATAAGACACCACACCCAAGA
TAAAAACGTAGGTGTCTCAGAGGGGGGGGGCAGAAAGAGACGAGGGAAGA
GAGCGAAAATGGAAAATGGGAGAGAGCGGGCGAGCAAGTCTCGAGGTCGC
TTGATTCTCGGAATGTTGTGGTAGACAGTGAGCACCACAAAAGAAAGCCG
CATCCCGCCCGTAAGCTTCCCCCCCGCCTTGCTTCTTCCTTCCTGGCCTT
TGTTCGTCGTCAAAGTAGGTGGTGCAGAGCATTCTCTGCACCTTCCCCGG
CGCCATCCAGACCCGGTGGCTCACCCTAGAGGGCGACACCAGCGAGGTGG
CGTGGAGGCCGGACGTGGTGG
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Coding sequence (CDS) from alignment at C-linearis_contig109:465723..471693+

>mRNA_C-linearis_contig109.1134.1 ID=mRNA_C-linearis_contig109.1134.1|Name=mRNA_C-linearis_contig109.1134.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig109:465723..471693+ (Chordaria linearis ClinC8C monoicous)
GACATCTCAGGCTCGTGGGACACGGAGAACCTGGTCAGCCCGCCGTTTGA
CTGCACCTGCACGACGCTCAAGGCCAAGACATCTCAGGCTCGTGGGACAC
GGAGAACCTGGTCAGCCCGCCGTTTGACTGCACCTGCACGACGCTCAAGG
CCAACTACCACTGCCCTAACCTGGGTAAGGATGGGTACCCGAAATGGAAC
CCTCCAGCCGTATCAAGCGGCTCCTGCAAACCAAAGGACATGAAAACGCT
CAAGCAGGAGCCGTTCCCACCGGGGTTCAAGGTCCTCTTCTTCGGCAACT
CGCATATCCGACAGCTACCACTGCCCTAACCTGGGTAAGGATGGGTACCC
GAAATGGAACCCTCCAGCCGTATCAAGCGGCTCCTGCAAACCAAAGGACA
TGAAAACGCTCAAGCAGGAGCCGTTCCCACCGGGGTTCAAGGTCCTCTTC
TTCGGCAACTCGCATATCCGACAGGTGGTGCAGAGCATTCTCTGCACCTT
CCCCGGCGCCATCCAGACCCGGTGGCTCACCCTAGAGGGCGACACCAGCG
AGGTGGCGTGGAGGCCGGACGTGGTGGTGGTGCAGAGCATTCTCTGCACC
TTCCCCGGCGCCATCCAGACCCGGTGGCTCACCCTAGAGGGCGACACCAG
CGAGGTGGCGTGGAGGCCGGACGTGGTG
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