mRNA_C-linearis_contig109.1133.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig109.1133.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE) HSP 1 Score: 424 bits (1090), Expect = 3.880e-140 Identity = 218/349 (62.46%), Postives = 250/349 (71.63%), Query Frame = 2
Query: 356 ACTVDELVPPHDQ----------DMSDMWDKDALVPPSFDCTCRTLKASYHCPNLGTDGYPQWVPRQESSGACKSKTKKDLELDPLPPGFKVLFYGNSHLRQVVESIVCAYSGVIGSRKLSLFDVASGESSSEVKPVGPDRQCRSCVFSRKKSKRLLLESGCVSEEELKEACSCDTNESAFEFENGAVLYYHFAHKEEDKSIEDALKIQGTEFSDYDAVIANPGNEPRMEVSETLRAAVRLEEAGVPFFWLSAYEGEGGIDAWRPEEQEEFWDHGARFVPVHRMVESLKYLTKGEVEGEKYNPHFCLPGPPNEIGVLLLKMVWALRGEDGRQARDGGGEWR*RCNVEMN 1372
ACTVD+LVPPH D+S MWDK ++V P FDCTCRTLKASY CPNLGT GYP+W +SGAC+ + + L+ +PLPP F+VLFYGNSHLRQVVE IVCAYS I SR L + V G + E V D QCR CV S K+ + +LLE C+SEE KEACSCD NES FEF+NGA ++YHFAHKEE+K EDALK +GTE+S YD V+ N GN+PRMEVSE LR A L+E GV FW SAYEGEG + AW PEEQ FWD GARFVPVHRMVESLKYLTKG VEGE NPHFC+PGPPNEIG+LLL+M WA+ E G AR GGE R V N
Sbjct: 92 ACTVDDLVPPHGNYEDGGGDGGYDLSGMWDKSSMVAPPFDCTCRTLKASYFCPNLGTGGYPKW----NTSGACERRERSALQNEPLPPAFRVLFYGNSHLRQVVEGIVCAYSTSIRSRCLRVV-VGGGSLAPEDALVDEDLQCRGCVNSHKQ-RNMLLEHECISEEAKKEACSCDDNESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYSFYDVVVGNLGNDPRMEVSEVLRVANLLKEEGVTLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGEN-NPHFCMPGPPNEIGILLLEMAWAVYAERGDAAR--GGEEVPRIEVAGN 431
BLAST of mRNA_C-linearis_contig109.1133.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI) HSP 1 Score: 405 bits (1042), Expect = 1.300e-133 Identity = 208/334 (62.28%), Postives = 243/334 (72.75%), Query Frame = 2
Query: 395 DMSDMWDKDALVPPSFDCTC-------RTLKASYHCPNLGTDGYPQWVPRQESSGACKSKTKKDLELDPLPPGFKVLFYGNSHLRQVVESIVCAYSGVIGSRKLSLFDVASGES-SSEVKPVGPDRQCRSCVFSRKKSKRLLLESGCVSEEELKEACSCDTNESAFEFENGAVLYYHFAHKEEDKSIEDALKIQGTEFSDYDAVIANPGNEPRMEVSETLRAAVRLEEAGVPFFWLSAYEGEGGIDAWRPEEQEEFWDHGARFVPVHRMVESLKYLTKGEVEGEKYNPHFCLPGPPNEIGVLLLKMVWALRGEDGRQARDGGGEWR*RCNVEMN 1372
D+S MWDK ++V P FDCTC R L ASY CPNLGT GYP+W +SG C+ + + L+ +PLPPGF+VLFYGNSHLRQVVE IVCAYS I SR L + V GES + E V D QCRSCV+SRK +R LLE C+SE+ +EAC CD +ES FEF+NGA ++YHFAHKEE+K EDAL+ +GTE+S YDAV+ N GN+PRMEVSE LR A L+E GVP FW SAYEGEG + AW PEEQ FWD GARFVPVHRMV+SLKYLTKG VEGE NPHFC+PGPPNEIG+LLL+M WA+ E G AR GGE R VE N
Sbjct: 112 DLSGMWDKSSMVAPPFDCTCSGSGRAGRALNASYFCPNLGTGGYPKW----STSGGCERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRV--VVDGESLAQEDTLVDEDLQCRSCVYSRK-LRRTLLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALQYRGTEYSSYDAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVKSLKYLTKGVVEGEN-NPHFCMPGPPNEIGILLLEMAWAVYAERGGAAR--GGEEVPRIEVEGN 435
BLAST of mRNA_C-linearis_contig109.1133.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE) HSP 1 Score: 244 bits (624), Expect = 2.320e-71 Identity = 140/333 (42.04%), Postives = 194/333 (58.26%), Query Frame = 2
Query: 359 CTVDELVP----PHDQDMSDMWDKD--ALVPPSFDCTCRTLKASYHCPNLGTDGYPQWVPRQESSGACKSKTKKDLELD--PLPPGFKVLFYGNSHLRQVVESIVCAYSGVIGSRKLSLFDVASGESSSEVKPVGPDRQCRSC-VFSRKKSKRLLLESGCVSEEELKEACSCDTNESAFEF----ENGAVLYYHFAHKEEDKSIEDALKIQGTE-FSDYDAVIANPGNEPRMEVSETLRAAVRLEEAGVPFFWLSAYEGEGGIDAWRPEEQE-EFWDHGARFVPVHRMVESLKYLTKGEVEGEKYN-PHFCLPGPPNEIGVLLLKMVWALRGE 1309
CTVDEL+P PH +S W + + P + C C KA Y CPNLG+ YP+WVPR + G C+S T++++ P PP KVLFYGNSH+RQ +E+I+C + + S++L + ++ ++ G D CR+C V++ K LL SGC+ NGAV++++FA+ +EDK I DAL E S Y AV ANPGN+P +E L AAV L+ AGVPFFWLS YEG+G W ++E +FW+ GA+FV V +V+ L LT+ VE N PHFC+PGPP+E+G+LLLK++WAL E
Sbjct: 122 CTVDELLPLKKSPHSA-LSSEWSQGQGGVWKPPYGCDCAFSKARYFCPNLGSGVYPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQTLEAILCLFQKDVVSKRLRFVSATNANETAYLEVPG-DTPCRACSVWTFFKD--TLLNSGCIGXXXXXXXXXXXXXXXXXXXXXXXSNGAVVHFYFANHDEDKRITDALAPHHKEDLSYYTAVFANPGNKPSVEADAVLDAAVELQAAGVPFFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERTVENDPHFCMPGPPDEVGILLLKLLWALHHE 450
BLAST of mRNA_C-linearis_contig109.1133.1 vs. uniprot
Match: A0A6H5L5J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE) HSP 1 Score: 176 bits (447), Expect = 2.200e-48 Identity = 89/193 (46.11%), Postives = 121/193 (62.69%), Query Frame = 2
Query: 749 QCRSCVFSRKKSKRLLLESGCVSEEELKEACSCDTNESAFEFENGAVLYYHFAHKEEDKSIEDALKIQGT-EFSDYDAVIANPGNEPRMEVSETLRAAVRLEEAGVPFFWLSAYEGEGGIDAWRPEEQEEFWDHGARFVPVHRMVESLKYLTKGEVEGEKYNPHFCLPGPPNEIGVLLLKMVWALRGEDGRQA 1324
QCR+C +++ + GC+ ++ +AC CD + + F F+NGAV++Y+FA + +KSI+DAL G S YDAV+AN GN P M V AA+ L+ VPF WLS Y G G +D W +QE+F GARFV V M+ L TKG VEG +PHFCLPGPP+E+G+LLLK++WA+ E G A
Sbjct: 31 QCRACTGLQQQQ----VNYGCLDQDVRDDACRCDDDHAEFLFQNGAVVHYYFASTDPNKSIKDALLPHGNVSLSYYDAVVANNGNGPEMAVDVVCEAALELQALSVPFLWLSTYVGRGSVDLWNDAQQEQFTQSGARFVNVGHMMFGLSNFTKGAVEGGN-DPHFCLPGPPDELGLLLLKIIWAIHQERGAAA 218
BLAST of mRNA_C-linearis_contig109.1133.1 vs. uniprot
Match: A0A6H5LBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE) HSP 1 Score: 173 bits (439), Expect = 3.200e-47 Identity = 88/194 (45.36%), Postives = 123/194 (63.40%), Query Frame = 2
Query: 749 QCRSCV-FSRKKSKRLLLESGCVSEEELKEACSCDTNESAFEFENGAVLYYHFAHKEEDKSIEDALKIQGT-EFSDYDAVIANPGNEPRMEVSETLRAAVRLEEAGVPFFWLSAYEGEGGIDAWRPEEQEEFWDHGARFVPVHRMVESLKYLTKGEVEGEKYNPHFCLPGPPNEIGVLLLKMVWALRGEDGRQA 1324
QCR+C F +++ ++ GC+ ++ +AC CD + + + F+NGAV++Y+FA + KSI+DAL G S YDAV AN GN P+M V + AA L+ VPF WLS Y+G G +D W ++E+F GARFV V M+ L TKG VE ++ +PHFCLPGPP+E+G LLLK++WAL E G A
Sbjct: 31 QCRACTGFDQQQ-----VDYGCLDQDVRDDACRCDDDHAEYLFQNGAVVHYYFAGTDPKKSIKDALLPHGNVSLSHYDAVFANDGNWPKMAVDDVCEAAFELQALSVPFLWLSTYDGHGSVDLWNDAQKEKFSQSGARFVNVGHMLFGLSNFTKGAVE-DRVDPHFCLPGPPDELGFLLLKIIWALYQERGAAA 218
BLAST of mRNA_C-linearis_contig109.1133.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI) HSP 1 Score: 158 bits (400), Expect = 5.740e-42 Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 2
Query: 833 EACSCDTNESAFEFENGAVLYYHFAHKEEDKSIEDALKIQGTE-FSDYDAVIANPGNEPRMEVSETLRAAVRLEEAGVPFFWLSAYEGEGGIDAWR-PEEQEEFWDHGARFVPVHRMVESLKYLTKGEVEGE-KYNPHFCLPGPPNEIGVLLLKMVWALRGE 1309
E CD + F F NGAV++++FA+++EDK I DAL E FS Y AV ANPGN+P +E L AA L+ AGVPFFWLS YEG+G W P+ + +F GA+FV V MV+ L LT+ VE + +PHFC+PGPP+E+G+LLLK++WAL E
Sbjct: 23 ETLRCDDDHGEFFFSNGAVVHFYFANRDEDKRITDALAPHDKEDFSYYTAVFANPGNKPSVEADAVLDAAFELQAAGVPFFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVVERTVEDDPHFCMPGPPDEVGILLLKLLWALHHE 184
BLAST of mRNA_C-linearis_contig109.1133.1 vs. uniprot
Match: A0A835Z986_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z986_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.690e-25 Identity = 94/323 (29.10%), Postives = 132/323 (40.87%), Query Frame = 2
Query: 434 PSFDCTCRTLKASYHCPNLGTDGYPQWVPRQESSGACKSKTKKDLELDPLPPGFKVLFYGNSHLRQVVESIVCAYSGVIGSRKLS---LFDVASGESSSEVKPVGPDRQCRSCVFSRKKSKRLLLESGCVSEEELKEAC----SCDTNESAFEFENGAVLYYHFAHKEEDKSIEDAL-KIQGTEFSDYDAVIANPGNEPRMEVSETLRAAVRLEEAGV-PFFWLSAYEGEGGIDAWR----------PEEQEEFWDHGARFVPVHRMVESLKYLTKGEVEGEKYNPHFCLPGPPNEIGVLLLKMV----WALRGEDGRQARDG 1333
P +DC+C KA YHC P WVPR G C++ L +PPG +VLF GNSH+RQ+VES +CA+ + R +S L D++ CR K L GC E + C + + F NGA + Y F H+E +K+I+ + GT DYD V+AN GN P M +S L G+ W+ Y G +D +R P + F + + + T + + HFC+P P ++I L V W L E G A DG
Sbjct: 68 PLYDCSCPLAKARYHCHEFNAVDGPVWVPRALVKGECRALPHNPL----VPPGARVLFAGNSHMRQLVESGLCAHRHEVARRNVSAGVLEDISI--------------PCRGFRL-----KHYL--DGCPYEPSVLGVAPGQLECSDDRATFTLSNGATVSYVFMHREVNKTIDQFIGPTFGTSLRDYDIVVANAGNAPDMLLSSFADEVGPLVTQGIIKALWVPLYWGSDALDEFRDARTLNNGNLPTASQRAALDAITFFDLRILTSGVASFTVAKRAHLSRDGHFCMPSPVDDISDTLFAHVRYLWWHLALERGGSALDG 365 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1133.1 >prot_C-linearis_contig109.1133.1 ID=prot_C-linearis_contig109.1133.1|Name=mRNA_C-linearis_contig109.1133.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=381bp MPRCGATAQQLLVLVLVLLLVASARICGEENQLTLEIEVEVEVDSDSAVAback to top mRNA from alignment at C-linearis_contig109:432931..440807+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1133.1 ID=mRNA_C-linearis_contig109.1133.1|Name=mRNA_C-linearis_contig109.1133.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7877bp|location=Sequence derived from alignment at C-linearis_contig109:432931..440807+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:432931..440807+ >mRNA_C-linearis_contig109.1133.1 ID=mRNA_C-linearis_contig109.1133.1|Name=mRNA_C-linearis_contig109.1133.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2286bp|location=Sequence derived from alignment at C-linearis_contig109:432931..440807+ (Chordaria linearis ClinC8C monoicous)back to top |