mRNA_C-linearis_contig109.1130.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1130.1
Unique NamemRNA_C-linearis_contig109.1130.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: A0A835YL21_9STRA (HopJ type III effector protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL21_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.880e-33
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 2 
Query:  599 ARLVEEPGSVMFEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRGVLADPEGDSHGNIRAFMESGWDGVEFPDGLSLSPK 919
            ARL +   +V FE+ M  I A +++ PK F NG   + AG NEGSCKVF+FGK+A L  A TL+CFG+H+R VLADP G +H NIR+FME+GW GV FP+G++L+PK
Sbjct:   17 ARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 123
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: A0A813DTD3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DTD3_POLGL)

HSP 1 Score: 141 bits (355), Expect = 4.860e-31
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 2 
Query:  593 LRARLVEEPGSVMFEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRGVLADPEGDSHGNIRAFMESGWDGVEFPDGLSLSP 916
            LRAR       + F E + AI A F+YTPKRF NG   S AG NEGSCKVF+ GK+AG S AE LACFGEH++ VL DP G SHGNIRAFM+ GW GV+FPDG++L P
Sbjct:  130 LRARFSAGQSELAFAETLAAIAADFEYTPKRFVNGGVESAAGSNEGSCKVFSLGKLAGFSEAEVLACFGEHYQQVLGDPAGTSHGNIRAFMKHGWAGVDFPDGVALEP 237
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: A0A6S6S0H3_9GAMM (Type III effector HopPmaJ n=1 Tax=uncultured Thiotrichaceae bacterium TaxID=298394 RepID=A0A6S6S0H3_9GAMM)

HSP 1 Score: 119 bits (299), Expect = 2.260e-28
Identity = 54/99 (54.55%), Postives = 73/99 (73.74%), Query Frame = 2 
Query:  623 SVMFEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRGVLADPEGDSHGNIRAFMESGWDGVEFPDGLSLSPK 919
            S++F + + AI+A ++YTP+ F+NG   + AG NEGSCKVFAF ++  LS  +TL CF EH+R VLA PEG+ HGNIR FME+GWDG+ F  G++L  K
Sbjct:   16 SLVFSDVIAAIDANYEYTPQTFKNGEVENAAGTNEGSCKVFAFAQLNDLSQEQTLTCFAEHYRSVLATPEGNDHGNIRNFMETGWDGINFT-GVALQAK 113
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: A0A7Y4A5Z9_9VIBR (HopJ type III effector protein n=1 Tax=Vibrio sp. RE86 TaxID=2607605 RepID=A0A7Y4A5Z9_9VIBR)

HSP 1 Score: 119 bits (298), Expect = 3.280e-28
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 2 
Query:  605 LVEEPGSVMFEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFR-GVLADPEGDSHGNIRAFMESGWDGVEFPDGLSLSPK 919
            L E+P S+ FE+ M  IEA FD+ P  F+NG T + A +N GSCK+FAFG+V GLSP  TLACFG+ +R  VL +P+GD H NIR F+E GW G+EF +G +L  K
Sbjct:   10 LSEQPTSIQFEDTMAVIEANFDFAPTAFKNGNTLNEANQNNGSCKIFAFGQVKGLSPEATLACFGKFYREDVLGNPDGDDHANIRNFIEFGWSGIEF-EGEALKVK 114
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: A0A4Q7YNP1_9GAMM (HopJ type III effector protein n=1 Tax=Fluviicoccus keumensis TaxID=1435465 RepID=A0A4Q7YNP1_9GAMM)

HSP 1 Score: 119 bits (297), Expect = 4.360e-28
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 2 
Query:  620 GSVMFEEAMGAIEAGFDYTPKRFENGVTS---SGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRGVLADPEGDSHGNIRAFMESGWDGVEFPDGLSLSPK 919
            G   FE+ +  I A ++Y P RF NG+T    S AG+NEGSC++FAFG++ GLS  +TL CFG H+R VLADP+G SHGNIR FM  GW G+ F DG  LSPK
Sbjct:   12 GETDFEDTIALINALYEYRPTRFSNGLTDTLVSEAGQNEGSCRIFAFGQLNGLSAEDTLRCFGRHYRDVLADPDGSSHGNIRRFMRDGWAGIAF-DGPVLSPK 113
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: A0A2E9DDM5_9GAMM (Type III effector n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A2E9DDM5_9GAMM)

HSP 1 Score: 115 bits (289), Expect = 5.050e-27
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2 
Query:  587 EGLRARLVEEPGSVMFEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRGVLADPEGDSHGNIRAFMESGWDGVEFPDGLSLSPK 919
            E L ARL  +  ++ FE+ +  I   F+YTP  F NG   + AG+NEGSCK+ AFG++AGLS A+TLACFG  +R VLA PEG  HGNIR FM+ GW G+ F +G+ L+P+
Sbjct:    4 EQLTARLGTDE-TIDFEDVIAFIGEHFEYTPCAFRNGDLHNEAGQNEGSCKILAFGQLAGLSEAQTLACFGRFYRDVLATPEGSDHGNIRNFMDKGWSGIRF-EGIPLAPR 112
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: UPI000475B552 (HopJ type III effector protein n=1 Tax=Thiofilum flexile TaxID=125627 RepID=UPI000475B552)

HSP 1 Score: 115 bits (289), Expect = 5.850e-27
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 2 
Query:  623 SVMFEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRGVLADPEGDSHGNIRAFMESGWDGVEF 892
            S+ F + +  I+A + YTP+ F+NG  SS AG NEGSCKVFAFG + GL+  +TL CF EH+R VLA PEG +H NIRAFM SGW+G++F
Sbjct:   16 SLQFSQVIAVIDAHYAYTPQAFQNGALSSPAGTNEGSCKVFAFGLLQGLTQEQTLHCFAEHYRAVLAHPEGHNHANIRAFMLSGWEGIQF 105
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: A0A6L6JIR5_9GAMM (HopJ type III effector protein n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A6L6JIR5_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 1.370e-26
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 2 
Query:  602 RLVEEPGSVMFEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFR-GVLADPEGDSHGNIRAFMESGWDGVEFPDGLSLSPK 919
            RL  EP S+ FE++M  IEA +D+TP  F NG   + AG+N GSCK+ AFG++ GLS  +TLACFG+ +R  VLA+P G+ H NIR FM +GWD V F  G +L PK
Sbjct:    9 RLESEPESIQFEDSMAVIEANYDFTPTAFRNGEILNEAGQNNGSCKILAFGQLNGLSVDQTLACFGKFYRQDVLANPNGEDHQNIRNFMRTGWDEVSF-HGTALMPK 114
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: A0A2P6ASG6_9GAMM (Type III effector (Fragment) n=1 Tax=Amnimonas aquatica TaxID=2094561 RepID=A0A2P6ASG6_9GAMM)

HSP 1 Score: 114 bits (285), Expect = 1.430e-26
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 2 
Query:  632 FEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRGVLADPEGDSHGNIRAFMESGWDGVEF 892
            FE+    I   +DYTP  F NG  S+ AG+NEGSC++FAF ++ GLS A+TL CFG H+R VLA+P+G SHGNIR FM+ GW+G+ F
Sbjct:   17 FEDIQSYIRNHYDYTPTAFRNGSVSNDAGQNEGSCRLFAFARLEGLSEADTLVCFGRHYRDVLAEPQGSSHGNIRQFMQHGWEGIAF 103
[Close]
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Match: F5T294_9GAMM (Type III effector HopPmaJ n=2 Tax=Methylophaga TaxID=40222 RepID=F5T294_9GAMM)

HSP 1 Score: 113 bits (283), Expect = 3.500e-26
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 2 
Query:  602 RLVEEPGSVMFEEAMGAIEAGFDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRG-VLADPEGDSHGNIRAFMESGWDGVEF 892
            +L   P ++ F++ M  IEA + +TP  F+NG T++ AG+N GSCK+F FGK+  LS  ETLACFG+++R  VLA+P GD H NIR FM++GWDGV+F
Sbjct:    9 QLKTHPENIAFDDTMSVIEANYVFTPTAFKNGGTTNEAGQNNGSCKIFGFGKIHALSVDETLACFGQYYRDDVLANPHGDDHQNIRHFMKTGWDGVQF 106
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YL21_9STRA4.880e-3356.07HopJ type III effector protein n=1 Tax=Tribonema m... [more]
A0A813DTD3_POLGL4.860e-3162.04Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A6S6S0H3_9GAMM2.260e-2854.55Type III effector HopPmaJ n=1 Tax=uncultured Thiot... [more]
A0A7Y4A5Z9_9VIBR3.280e-2854.72HopJ type III effector protein n=1 Tax=Vibrio sp. ... [more]
A0A4Q7YNP1_9GAMM4.360e-2856.31HopJ type III effector protein n=1 Tax=Fluviicoccu... [more]
A0A2E9DDM5_9GAMM5.050e-2752.25Type III effector n=2 Tax=Oceanospirillaceae TaxID... [more]
UPI000475B5525.850e-2757.78HopJ type III effector protein n=1 Tax=Thiofilum f... [more]
A0A6L6JIR5_9GAMM1.370e-2653.27HopJ type III effector protein n=1 Tax=Methylophag... [more]
A0A2P6ASG6_9GAMM1.430e-2656.32Type III effector (Fragment) n=1 Tax=Amnimonas aqu... [more]
F5T294_9GAMM3.500e-2653.06Type III effector HopPmaJ n=2 Tax=Methylophaga Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:398330..401875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.5
Seed ortholog evalue4e-23
Seed eggNOG ortholog1123400.KB904782_gene1366
Preferred namehopJ
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.type III effector
EggNOG OGs1MZKM@1224,1S8UZ@1236,2C9B9@1,32RP0@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size2002
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1130.1prot_C-linearis_contig109.1130.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 399410..401811 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927421.8447943-UTR-C-linearis_contig109:398329..3994091622927421.8447943-UTR-C-linearis_contig109:398329..399409Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 398330..399409 -
1690879691.581325-UTR-C-linearis_contig109:398329..3994091690879691.581325-UTR-C-linearis_contig109:398329..399409Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 398330..399409 -
1622927421.874357-UTR-C-linearis_contig109:401811..4018751622927421.874357-UTR-C-linearis_contig109:401811..401875Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 401812..401875 -
1690879691.6200068-UTR-C-linearis_contig109:401811..4018751690879691.6200068-UTR-C-linearis_contig109:401811..401875Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 401812..401875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927421.8563044-CDS-C-linearis_contig109:399409..3996471622927421.8563044-CDS-C-linearis_contig109:399409..399647Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 399410..399647 -
1690879691.599713-CDS-C-linearis_contig109:399409..3996471690879691.599713-CDS-C-linearis_contig109:399409..399647Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 399410..399647 -
1622927421.8652937-CDS-C-linearis_contig109:401191..4018111622927421.8652937-CDS-C-linearis_contig109:401191..401811Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 401192..401811 -
1690879691.6101017-CDS-C-linearis_contig109:401191..4018111690879691.6101017-CDS-C-linearis_contig109:401191..401811Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 401192..401811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1130.1

>prot_C-linearis_contig109.1130.1 ID=prot_C-linearis_contig109.1130.1|Name=mRNA_C-linearis_contig109.1130.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=286bp
MRSIAVLGAAVLTLVVRNAEAFFLPAGNLVGGGASPTSPVLTANSVSSSS
SSIVARAAARGSGCSCPSCNRGICGRSCRCPSCSKGLSARSHAAGCRCGA
CSVRMQAHPVGCGCGDCTPAPTAFHGSCCSCADCSYRSKAESCACSVCAS
RPGGRGSSSATVMRMGAGQVSETGEGLRARLVEEPGSVMFEEAMGAIEAG
FDYTPKRFENGVTSSGAGENEGSCKVFAFGKVAGLSPAETLACFGEHFRG
VLADPEGDSHGNIRAFMESGWDGVEFPDGLSLSPK*
back to top

mRNA from alignment at C-linearis_contig109:398330..401875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1130.1 ID=mRNA_C-linearis_contig109.1130.1|Name=mRNA_C-linearis_contig109.1130.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3546bp|location=Sequence derived from alignment at C-linearis_contig109:398330..401875- (Chordaria linearis ClinC8C monoicous)
CCGGCACATCAGCAGCAACGAGAGAGCAAGAGACCAAAACTCAGCACCTT
CGCTCCAAGAAACCATGAGGTCAATTGCAGTACTCGGCGCTGCCGTGCTG
ACTCTGGTGGTGAGAAATGCGGAGGCCTTCTTCTTGCCCGCCGGAAACTT
GGTCGGCGGTGGTGCATCGCCCACCTCACCTGTTCTCACCGCGAACAGTG
TCAGCAGCAGTAGCAGCAGCATCGTCGCCCGCGCCGCGGCCCGCGGTTCC
GGGTGCTCCTGCCCCTCGTGCAACAGAGGAATATGTGGCAGATCATGCCG
CTGCCCGTCCTGCTCCAAGGGGCTCTCTGCGCGATCCCACGCAGCGGGTT
GCCGTTGCGGCGCGTGTTCGGTGCGCATGCAGGCGCACCCGGTAGGCTGC
GGCTGCGGGGACTGCACCCCGGCGCCGACCGCGTTCCACGGCTCCTGCTG
CAGTTGCGCCGACTGCTCCTACCGATCCAAGGCCGAGTCTTGCGCGTGCA
GCGTGTGCGCCAGCCGCCCCGGCGGGCGAGGATCTTCGTCGGCCACGGTG
ATGAGGATGGGAGCCGGACAGGTGTCAGAAACGGGCGAGGGGCTGAGGGC
GCGGCTTGTGGAGGAGCCGGGGTCGGTCATGTTTGAGGAGGCCATGGGCG
CCATCGAGGCCGGTTTCGACTACACCCCCAAGCGGTGAGTACACGCGAGT
GCGAGTGTGCTAGGTAGGGCCTTTGTGATAGTGAGCGAGATGAAAAACAG
CGGGTGTGGCGTTTGATTGAGTTGAGTTGAGTCACACACGTGTGAAAATA
TGGCATGCGTGTTTTTTTCACTTGGTTTCAGAGCTTACGCCGCGCCCGCG
GCATCAACTCTGGCGCGTGCCCTTCAACTTTCCAACGATGTTGGCATTTT
GTTTGCGTTGATGGGCGAACCTCCTGCACTATTGTGCAGAATTTTCGAAG
GCCTGTTGCAGTGCTGTGGTTACTGCTCGCCTTCCGAGCTGGGCTTGAAG
GCGATGTGTGCCTCCATATTGTACGAATTGCCGCAGCGCGGGAGTGACCT
GGAACTCTACGTAGAATTGATCCCTGGCACTGAAGGTCCCGTTTTTTACG
TTACATCCCTGCTGTTGTGCGAAGCAGCAGCTTCCCCAACCAGCTGCATC
TGTGCCGGTGCTGCAGGTGTTGGCATACGACGCAATTGTGCTTTCCCCAC
ACACCGTTGCGCAAAACATATCGTGTTTTTTTTCGATGGACAGGTTGGGT
GCTGGTTCATGTATCATGCATGACACACCTGAACACGCCATCAGCAGCAG
CCAGCACCCAAAGAACACCGCATTCCATACCGCATGAACCCGCACCTGAT
GCTTTTTCCACTGTCGCCCATATTTTTGTTGCCGCTCCATCTTGTTCGAA
GGATGCCAAAACCACACAGCAGTCGGTGCGCCACATGTCGGGAGATACCA
CCCCCCCCGTCTTGATCGATTTTCTCTTCCTTGAATCTTGTTGTCCAAAA
GAATAAATCGAACACCGATGTCTGGTGGTAGTTGTAGCGGGTTTGGCACC
CATCCTTGGTGTGGAGCGCTGAGATCGGACATTCGTACCATGGGCGAGAC
GGGGGGTCGTGAAAACGTGAAAAACGATACCGCGTGCACATGTATGCCGT
ACAGCCGTCAGTACATCCGCACCATGAAACCAGCCGAACAAAATGTCAAA
ACGTACGCACTCCTGTACCGCCATGTTTTTGTGGCTGGTTCGGTTCTGTG
CCGTGTGTGTCGCCGGTGTGCGGTGTCAGCAGATGTTTCTGCCAACCTTT
ACAAAATTGAATGTTCGAAGGTGTGCAGCGCGTCAAGGAAGCCTCCCACA
CACCCACACGCGTAAAACAAGAACCCCAACAGCAGCCACGACCAACCTTA
GTTCAGTTCATTGGGAAGTTAACATTGTGCACCCGCCCTCCTCCCTACTT
GTTCACCGTGACTATGTATGTTGTTGCTTCTTGCTTTTGTTTTTTGCTCG
TCATATTTCATCTCGCTGCCCCCGACCCCGACCCCCACCCCCACTTCCAC
TTCCACACCCCGCCCTACACCCAGGCGCTGAGCTGACACGCCACCCGCTA
CCGCCGCCGCCGCTGCTGCTGCTGCTGCCGCGTTGGGGGCGTCCCTGCCG
CTGCAACAATCCCCCCAAAAACACACCATCAACAACCAAAAAAAATTAAA
CCGTGAAAAACAAAAAACAAAAAACAAGATTTGAGAACGGCGTGACGTCG
AGCGGCGCGGGCGAGAACGAGGGGAGCTGCAAGGTCTTCGCGTTCGGAAA
GGTCGCCGGCCTCTCGCCGGCCGAGACCCTGGCGTGCTTCGGGGAGCACT
TCCGCGGCGTGCTCGCCGATCCGGAGGGGGACAGCCACGGGAACATCCGG
GCCTTCATGGAGAGCGGCTGGGACGGCGTCGAGTTCCCCGATGGTCTCTC
CCTTTCTCCCAAGTGAAGGGGTGGGTCATGCTGCTGTAGCAAAACAAATC
TCTGGGTGTGTAATTTTCGGCTCGGCTTGACAAGGCAGGCCTCGGCTGGA
GTACAGTCGATTGAATCGGATAAGATTGTTTTTGTTTGGCCTTGGGCTGG
TCTAATTTTGGTTTTGGCGGCTGTGACGAGTGCCGCCGCTATAGTTGGTC
CCTCTTTTGCGTCCGGGGCGGGTAAAATTTTCGAGGAAGGCCACTGCTCG
GAGCTGTTTCTCGTGTAGTGGTTGTTGCCGTTTACTCCGGTTTTTTGTTT
GTTGTTGCCCACGGAGGGTAGGGTTAAGGTGAATAGAGACAGATCACAGA
CGTCCTGCTGAGGTGCCGGGATGCGATTGGGAGGGGTCAGGGGGACATGT
ACATGTCCCCCATAACTCTTCAGGGTAAGCGCAGGGGACGCAGGCGCAGA
GTAGTGTTTTTTTTTGTCCTTCAACACGGATGAAGTTAGTCATGCGTTCA
TATCAGCTTGTTGCTTGTTGTCGAACTGCTGTTGTGTTGTTGGTTAGCGG
CAGCAGCGGAGACCTCTTGCAGGTTTTCTCTGTTGACTCTCGTCGCCGAA
TAGAAGTCAGAACCGCGCATGTAAAATGCCCGCAGCAGTTTTTACCCCAC
CCCCTCTTGTACTGCCGTTTTTCGTGTTGAGTTTCTTGTTGTCTTTTATT
TTAGCAAGCAAATAATAGACAAACACATTCGGCAGGATAGGTAGTCCACC
GCTTAGCATTTTTCTGTTTCCCATCACAATATGCACCACTGATTCTCCTT
CGTGAGAGCAGCACTGGGGCCGCAGGATTGCTTCCTCAGTAGTTAGACTA
GGCAAATATGTTGACATGGCTCCGGAACCTCCTCTAGACGAAACAACTGG
TTCGCTTTCCCTTGTTCGGCGAATCTTAGGTCTGTGCCTCTCCGTTTAGA
TTCGGCGTGCGCATTGGGGAACGGTCGACGGTGGATTTGATTTCCCCGCG
TTGGTGGTTGTCTGTTTCTTGTGTCCCACAATGCGAGAAGCTTCATTCAG
AGGGGGAAGGCAGAAAAAAGTACGTTTTTTTTGGGGGGGGAGGGGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig109:398330..401875-

>mRNA_C-linearis_contig109.1130.1 ID=mRNA_C-linearis_contig109.1130.1|Name=mRNA_C-linearis_contig109.1130.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1716bp|location=Sequence derived from alignment at C-linearis_contig109:398330..401875- (Chordaria linearis ClinC8C monoicous)
ATGAGGTCAATTGCAGTACTCGGCGCTGCCGTGCTGACTCTGGTGGTGAG
AAATGCGGAGGCCTTCTTCTTGCCCGCCGGAAACTTGGTCGGCGGTGGTG
CATCGCCCACCTCACCTGTTCTCACCGCGAACAGTGTCAGCAGCAGTAGC
AGCAGCATCGTCGCCCGCGCCGCGGCCCGCGGTTCCGGGTGCTCCTGCCC
CTCGTGCAACAGAGGAATATGTGGCAGATCATGCCGCTGCCCGTCCTGCT
CCAAGGGGCTCTCTGCGCGATCCCACGCAGCGGGTTGCCGTTGCGGCGCG
TGTTCGGTGCGCATGCAGGCGCACCCGGTAGGCTGCGGCTGCGGGGACTG
CACCCCGGCGCCGACCGCGTTCCACGGCTCCTGCTGCAGTTGCGCCGACT
GCTCCTACCGATCCAAGGCCGAGTCTTGCGCGTGCAGCGTGTGCGCCAGC
CGCCCCGGCGGGCGAGGATCTTCGTCGGCCACGGTGATGAGGATGGGAGC
CGGACAGGTGTCAGAAACGGGCGAGGGGCTGAGGGCGCGGCTTGTGGAGG
AGCCGGGGTCGGTCATGTTTGAGGAGGCCATGGGCGCCATCGAGGCCGGT
TTCGACTACACCCCCAAGCGATGAGGTCAATTGCAGTACTCGGCGCTGCC
GTGCTGACTCTGGTGGTGAGAAATGCGGAGGCCTTCTTCTTGCCCGCCGG
AAACTTGGTCGGCGGTGGTGCATCGCCCACCTCACCTGTTCTCACCGCGA
ACAGTGTCAGCAGCAGTAGCAGCAGCATCGTCGCCCGCGCCGCGGCCCGC
GGTTCCGGGTGCTCCTGCCCCTCGTGCAACAGAGGAATATGTGGCAGATC
ATGCCGCTGCCCGTCCTGCTCCAAGGGGCTCTCTGCGCGATCCCACGCAG
CGGGTTGCCGTTGCGGCGCGTGTTCGGTGCGCATGCAGGCGCACCCGGTA
GGCTGCGGCTGCGGGGACTGCACCCCGGCGCCGACCGCGTTCCACGGCTC
CTGCTGCAGTTGCGCCGACTGCTCCTACCGATCCAAGGCCGAGTCTTGCG
CGTGCAGCGTGTGCGCCAGCCGCCCCGGCGGGCGAGGATCTTCGTCGGCC
ACGGTGATGAGGATGGGAGCCGGACAGGTGTCAGAAACGGGCGAGGGGCT
GAGGGCGCGGCTTGTGGAGGAGCCGGGGTCGGTCATGTTTGAGGAGGCCA
TGGGCGCCATCGAGGCCGGTTTCGACTACACCCCCAAGCGATTTGAGAAC
GGCGTGACGTCGAGCGGCGCGGGCGAGAACGAGGGGAGCTGCAAGGTCTT
CGCGTTCGGAAAGGTCGCCGGCCTCTCGCCGGCCGAGACCCTGGCGTGCT
TCGGGGAGCACTTCCGCGGCGTGCTCGCCGATCCGGAGGGGGACAGCCAC
GGGAACATCCGGGCCTTCATGGAGAGCGGCTGGGACGGCGTCGAGTTCCC
CGATGGTCTCTCCCTTTCTCCCAAGTGAATTTGAGAACGGCGTGACGTCG
AGCGGCGCGGGCGAGAACGAGGGGAGCTGCAAGGTCTTCGCGTTCGGAAA
GGTCGCCGGCCTCTCGCCGGCCGAGACCCTGGCGTGCTTCGGGGAGCACT
TCCGCGGCGTGCTCGCCGATCCGGAGGGGGACAGCCACGGGAACATCCGG
GCCTTCATGGAGAGCGGCTGGGACGGCGTCGAGTTCCCCGATGGTCTCTC
CCTTTCTCCCAAGTGA
back to top