mRNA_C-linearis_contig109.1125.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1125.1
Unique NamemRNA_C-linearis_contig109.1125.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:360937..363607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2172
Cds size2163
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1125.1prot_C-linearis_contig109.1125.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 360937..363598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.2781327-CDS-C-linearis_contig109:360936..3611581622927416.2781327-CDS-C-linearis_contig109:360936..361158Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 360937..361158 -
1690879689.0754542-CDS-C-linearis_contig109:360936..3611581690879689.0754542-CDS-C-linearis_contig109:360936..361158Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 360937..361158 -
1622927416.2907696-CDS-C-linearis_contig109:361657..3635981622927416.2907696-CDS-C-linearis_contig109:361657..363598Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 361658..363598 -
1690879689.0847225-CDS-C-linearis_contig109:361657..3635981690879689.0847225-CDS-C-linearis_contig109:361657..363598Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 361658..363598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.3041735-UTR-C-linearis_contig109:363598..3636071622927416.3041735-UTR-C-linearis_contig109:363598..363607Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 363599..363607 -
1690879689.0926716-UTR-C-linearis_contig109:363598..3636071690879689.0926716-UTR-C-linearis_contig109:363598..363607Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 363599..363607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1125.1

>prot_C-linearis_contig109.1125.1 ID=prot_C-linearis_contig109.1125.1|Name=mRNA_C-linearis_contig109.1125.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=721bp
MPKREPAAAAAESSRSSANYFPRETIFLATIFLAKLFSSREGVHPLHMIR
RNLGLTYECARTRASERNSHTITRKCASGRIQYGCLPQVDGDAELGRMPK
REPAAAAAESSRSSATAVKEECGRASPPCPVSRLLAKISRPDGTGESKST
RFQASNGAAALQQQQRQPEAARDARPAAGGTPATEAPPVPAAATSTSTST
SKAAAAAAVTSTTSKAKKTKKKKKTTTTLEKPTRQQDRLLTPAQPPPVPK
SQLRRVRPKKIPFTSNRPSLRDDPRRLLGNYGDRFAVDTRSSRSSGEEDE
AEADDAGAETETDTPGPEEGIAGVGDQPAHLPQEGAMPTPPLARRLAPPV
RVAAEGAAAFPAAAAAAAAAAGPGVDGLHRRVSLDLMVGGAALAGGGGSS
NSSAGFGDAATSPARPAASAAVAVAASAAAAAAAAAAPGSTAFLPYAEHT
LPLPHGGFAYPAVSGGTVIKQESPPWGPFPPAAAPAPPAAAPKGFGYPQH
RHYHHHRQYPEQQQQQQQQQRFLSGTDEALAAAALSGGSPRSSGYSTADV
TLDNSLSPASLASRPVSPPAAQAAAAAAAAASEAAVCYSPTSALSQQQQQ
QQQQPRVDACVPASAASLAAAVQAEARRRVDKMMESPARCDLEFQHQPNG
ENTDWSRRNVPPRHREQEAHMGGPARPSLPPPRDFEHRVKDGDTDSSNTN
NNCINNDITTTNNKNDTNPTT
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mRNA from alignment at C-linearis_contig109:360937..363607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1125.1 ID=mRNA_C-linearis_contig109.1125.1|Name=mRNA_C-linearis_contig109.1125.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2671bp|location=Sequence derived from alignment at C-linearis_contig109:360937..363607- (Chordaria linearis ClinC8C monoicous)
CTAGGTCGGATGCCGAAGAGAGAACCAGCAGCAGCAGCAGCAGAGTCATC
ACGGTCGTCAGCTAACTATTTTCCTCGCGAAACTATTTTCCTCGCGACTA
TTTTCCTCGCGAAACTATTTTCCTCGCGAGAAGGTGTGCATCCATTACAC
ATGATACGACGAAATTTAGGTCTCACATACGAATGCGCGCGCACCCGCGC
TTCGGAACGAAATAGCCACACAATCACACGCAAATGTGCTTCGGGACGAA
TACAATACGGATGCTTGCCCCAGGTTGACGGCGATGCTGAGCTAGGTCGG
ATGCCGAAGAGAGAACCAGCAGCAGCAGCAGCAGAGTCATCACGGTCGTC
AGCAACTGCTGTGAAGGAGGAGTGCGGTCGAGCCTCGCCCCCATGCCCTG
TTTCTCGACTGCTAGCCAAGATCTCGAGGCCGGACGGCACTGGCGAGTCG
AAATCTACCCGGTTCCAGGCGAGCAACGGCGCCGCCGCTCTGCAACAGCA
GCAGAGGCAGCCCGAGGCCGCCAGAGATGCACGGCCAGCAGCAGGAGGGA
CACCTGCAACTGAAGCACCACCAGTTCCAGCTGCAGCAACGAGCACGAGC
ACGAGCACGAGCAAAGCCGCAGCGGCGGCAGCAGTAACAAGCACCACCAG
CAAGGCCAAGAAGACGAAGAAGAAGAAGAAGACGACGACGACGCTCGAGA
AACCCACGAGGCAACAAGACCGGCTGTTAACCCCAGCACAGCCGCCCCCG
GTGCCCAAGTCACAGCTTCGCCGCGTGCGCCCCAAGAAAATCCCCTTCAC
GTCTAACCGACCGAGCCTGCGCGACGACCCGCGGCGGCTGCTGGGCAACT
ACGGCGACAGGTTTGCCGTGGACACGCGCTCGTCGCGCAGCAGCGGAGAG
GAGGATGAGGCCGAGGCGGACGACGCGGGGGCGGAGACGGAGACAGACAC
GCCGGGTCCTGAGGAAGGCATCGCTGGCGTTGGTGACCAACCTGCGCACC
TCCCTCAAGAAGGCGCGATGCCCACGCCGCCCCTTGCGAGGCGGCTTGCA
CCGCCCGTGAGAGTGGCCGCGGAGGGGGCGGCGGCTTTTCCGGCAGCGGC
GGCGGCGGCGGCGGCGGCGGCGGGCCCCGGCGTCGATGGCTTGCACAGGA
GGGTGTCGCTCGATCTGATGGTCGGCGGCGCGGCGCTCGCTGGCGGGGGG
GGCAGCTCCAACAGCAGTGCCGGCTTCGGCGATGCGGCGACCTCGCCGGC
ACGGCCTGCCGCTTCCGCTGCTGTCGCTGTTGCCGCTTCCGCTGCTGCTG
CTGCTGCTGCTGCTGCCGCGCCGGGTTCGACGGCGTTCCTCCCATACGCT
GAACACACACTTCCTCTTCCTCACGGTGGTTTTGCCTACCCCGCGGTTAG
CGGCGGCACGGTAATCAAGCAGGAATCGCCCCCGTGGGGTCCTTTCCCGC
CTGCTGCTGCTCCTGCCCCGCCGGCCGCGGCTCCGAAAGGCTTCGGCTAC
CCCCAGCACCGCCACTACCACCACCACCGCCAGTACCCCGAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGTTTTTTGTCCGGAACGGACGAAGCACTTG
CAGCAGCGGCGCTGTCGGGAGGGTCGCCGCGCAGCAGCGGCTACTCCACC
GCGGACGTGACATTGGATAACTCTTTGTCGCCGGCGTCGCTGGCGTCTCG
GCCGGTGTCTCCTCCTGCCGCCCAAGCTGCTGCAGCGGCGGCGGCGGCGG
CGTCTGAGGCGGCGGTCTGCTACTCCCCTACCTCGGCCTTGTCGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCCACGCGTTGATGCGTGTGTGCCGGCCTC
TGCTGCCTCCTTGGCGGCTGCAGTTCAGGCGGAGGCGCGGAGAAGGGTGG
ACAAAATGATGGAAAGCCCGGCGAGATGCGACCTCGAGTTCCAGCACCAG
GTACTACTGTGTATACAACGTGCTCTTTTCCTGTTGTTGTGTGAGTTGTG
AGTGTTGCAGAGCAGTATCATACGATGAGAGTGTCGTCGTGAATTATGGG
CTCTCGTTGGCAGCGCGCACATGAAGCCGTTGATGCTTGATGCAGAAGGG
AGGTCACCTTGTTTTACGCGCTGCTTAGCGGCCTAAACCCCACCACATCC
CTCTGTCGTCCGTTCTGGTTCGCTTTTGCATCGATGTTCGTCTCGTTGTA
GCATTTTTTCGGGTTGTAGCCTACGCCCCGCGGGCCATGCTCCACAAGAT
TATACTTCGTACATTTTAGGGGGCACAAGGACGCCATGACGACCCATTGA
ACGGCCCCAGTGATTGACCCATGTTCCTCCTCTCGCGTTCGTTTGTCGTA
CCCTCAAACCCACGAATACACCATGACCATGATTTCCTCACGGTGCGGGT
TTGACTCGTCACACATCAACACATCCAATGTGTTCGGATCAATCCACAGC
CAAACGGCGAGAACACCGATTGGAGTCGCCGTAACGTCCCCCCGCGTCAT
CGTGAGCAGGAAGCACACATGGGAGGCCCTGCGCGGCCGAGCTTGCCACC
GCCTCGAGACTTTGAACACCGCGTCAAAGACGGCGACACCGATAGCAGCA
ACACCAACAACAACTGCATCAACAATGACATCACTACCACCAACAACAAG
AATGACACCAACCCCACCACA
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Coding sequence (CDS) from alignment at C-linearis_contig109:360937..363607-

>mRNA_C-linearis_contig109.1125.1 ID=mRNA_C-linearis_contig109.1125.1|Name=mRNA_C-linearis_contig109.1125.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4326bp|location=Sequence derived from alignment at C-linearis_contig109:360937..363607- (Chordaria linearis ClinC8C monoicous)
ATGCCGAAGAGAGAACCAGCAGCAGCAGCAGCAGAGTCATCACGGTCGTC
AGCTAACTATTTTCCTCGCGAAACTATTTTCCTCGCGACTATTTTCCTCG
CGAAACTATTTTCCTCGCGAGAAGGTGTGCATCCATTACACATGATACGA
CGAAATTTAGGTCTCACATACGAATGCGCGCGCACCCGCGCTTCGGAACG
AAATAGCCACACAATCACACGCAAATGTGCTTCGGGACGAATACAATACG
GATGCTTGCCCCAGGTTGACGGCGATGCTGAGCTAGGTCGGATGCCGAAG
AGAGAACCAGCAGCAGCAGCAGCAGAGTCATCACGGTCGTCAGCAACTGC
TGTGAAGGAGGAGTGCGGTCGAGCCTCGCCCCCATGCCCTGTTTCTCGAC
TGCTAGCCAAGATCTCGAGGCCGGACGGCACTGGCGAGTCGAAATCTACC
CGGTTCCAGGCGAGCAACGGCGCCGCCGCTCTGCAACAGCAGCAGAGGCA
GCCCGAGGCCGCCAGAGATGCACGGCCAGCAGCAGGAGGGACACCTGCAA
CTGAAGCACCACCAGTTCCAGCTGCAGCAACGAGCACGAGCACGAGCACG
AGCAAAGCCGCAGCGGCGGCAGCAGTAACAAGCACCACCAGCAAGGCCAA
GAAGACGAAGAAGAAGAAGAAGACGACGACGACGCTCGAGAAACCCACGA
GGCAACAAGACCGGCTGTTAACCCCAGCACAGCCGCCCCCGGTGCCCAAG
TCACAGCTTCGCCGCGTGCGCCCCAAGAAAATCCCCTTCACGTCTAACCG
ACCGAGCCTGCGCGACGACCCGCGGCGGCTGCTGGGCAACTACGGCGACA
GGTTTGCCGTGGACACGCGCTCGTCGCGCAGCAGCGGAGAGGAGGATGAG
GCCGAGGCGGACGACGCGGGGGCGGAGACGGAGACAGACACGCCGGGTCC
TGAGGAAGGCATCGCTGGCGTTGGTGACCAACCTGCGCACCTCCCTCAAG
AAGGCGCGATGCCCACGCCGCCCCTTGCGAGGCGGCTTGCACCGCCCGTG
AGAGTGGCCGCGGAGGGGGCGGCGGCTTTTCCGGCAGCGGCGGCGGCGGC
GGCGGCGGCGGCGGGCCCCGGCGTCGATGGCTTGCACAGGAGGGTGTCGC
TCGATCTGATGGTCGGCGGCGCGGCGCTCGCTGGCGGGGGGGGCAGCTCC
AACAGCAGTGCCGGCTTCGGCGATGCGGCGACCTCGCCGGCACGGCCTGC
CGCTTCCGCTGCTGTCGCTGTTGCCGCTTCCGCTGCTGCTGCTGCTGCTG
CTGCTGCCGCGCCGGGTTCGACGGCGTTCCTCCCATACGCTGAACACACA
CTTCCTCTTCCTCACGGTGGTTTTGCCTACCCCGCGGTTAGCGGCGGCAC
GGTAATCAAGCAGGAATCGCCCCCGTGGGGTCCTTTCCCGCCTGCTGCTG
CTCCTGCCCCGCCGGCCGCGGCTCCGAAAGGCTTCGGCTACCCCCAGCAC
CGCCACTACCACCACCACCGCCAGTACCCCGAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGTTTTTTGTCCGGAACGGACGAAGCACTTGCAGCAGCGG
CGCTGTCGGGAGGGTCGCCGCGCAGCAGCGGCTACTCCACCGCGGACGTG
ACATTGGATAACTCTTTGTCGCCGGCGTCGCTGGCGTCTCGGCCGGTGTC
TCCTCCTGCCGCCCAAGCTGCTGCAGCGGCGGCGGCGGCGGCGTCTGAGG
CGGCGGTCTGCTACTCCCCTACCTCGGCCTTGTCGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCCACGCGTTGATGCGTGTGTGCCGGCCTCTGCTGCCTC
CTTGGCGGCTGCAGTTCAGGCGGAGGCGCGGAGAAGGGTGGACAAAATGA
TGGAAAGCCCGGCGAGATGCGACCTCGAGTTCCAGCACCAGATGCCGAAG
AGAGAACCAGCAGCAGCAGCAGCAGAGTCATCACGGTCGTCAGCTAACTA
TTTTCCTCGCGAAACTATTTTCCTCGCGACTATTTTCCTCGCGAAACTAT
TTTCCTCGCGAGAAGGTGTGCATCCATTACACATGATACGACGAAATTTA
GGTCTCACATACGAATGCGCGCGCACCCGCGCTTCGGAACGAAATAGCCA
CACAATCACACGCAAATGTGCTTCGGGACGAATACAATACGGATGCTTGC
CCCAGGTTGACGGCGATGCTGAGCTAGGTCGGATGCCGAAGAGAGAACCA
GCAGCAGCAGCAGCAGAGTCATCACGGTCGTCAGCAACTGCTGTGAAGGA
GGAGTGCGGTCGAGCCTCGCCCCCATGCCCTGTTTCTCGACTGCTAGCCA
AGATCTCGAGGCCGGACGGCACTGGCGAGTCGAAATCTACCCGGTTCCAG
GCGAGCAACGGCGCCGCCGCTCTGCAACAGCAGCAGAGGCAGCCCGAGGC
CGCCAGAGATGCACGGCCAGCAGCAGGAGGGACACCTGCAACTGAAGCAC
CACCAGTTCCAGCTGCAGCAACGAGCACGAGCACGAGCACGAGCAAAGCC
GCAGCGGCGGCAGCAGTAACAAGCACCACCAGCAAGGCCAAGAAGACGAA
GAAGAAGAAGAAGACGACGACGACGCTCGAGAAACCCACGAGGCAACAAG
ACCGGCTGTTAACCCCAGCACAGCCGCCCCCGGTGCCCAAGTCACAGCTT
CGCCGCGTGCGCCCCAAGAAAATCCCCTTCACGTCTAACCGACCGAGCCT
GCGCGACGACCCGCGGCGGCTGCTGGGCAACTACGGCGACAGGTTTGCCG
TGGACACGCGCTCGTCGCGCAGCAGCGGAGAGGAGGATGAGGCCGAGGCG
GACGACGCGGGGGCGGAGACGGAGACAGACACGCCGGGTCCTGAGGAAGG
CATCGCTGGCGTTGGTGACCAACCTGCGCACCTCCCTCAAGAAGGCGCGA
TGCCCACGCCGCCCCTTGCGAGGCGGCTTGCACCGCCCGTGAGAGTGGCC
GCGGAGGGGGCGGCGGCTTTTCCGGCAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGGCCCCGGCGTCGATGGCTTGCACAGGAGGGTGTCGCTCGATCTGA
TGGTCGGCGGCGCGGCGCTCGCTGGCGGGGGGGGCAGCTCCAACAGCAGT
GCCGGCTTCGGCGATGCGGCGACCTCGCCGGCACGGCCTGCCGCTTCCGC
TGCTGTCGCTGTTGCCGCTTCCGCTGCTGCTGCTGCTGCTGCTGCTGCCG
CGCCGGGTTCGACGGCGTTCCTCCCATACGCTGAACACACACTTCCTCTT
CCTCACGGTGGTTTTGCCTACCCCGCGGTTAGCGGCGGCACGGTAATCAA
GCAGGAATCGCCCCCGTGGGGTCCTTTCCCGCCTGCTGCTGCTCCTGCCC
CGCCGGCCGCGGCTCCGAAAGGCTTCGGCTACCCCCAGCACCGCCACTAC
CACCACCACCGCCAGTACCCCGAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGTTTTTTGTCCGGAACGGACGAAGCACTTGCAGCAGCGGCGCTGTCGG
GAGGGTCGCCGCGCAGCAGCGGCTACTCCACCGCGGACGTGACATTGGAT
AACTCTTTGTCGCCGGCGTCGCTGGCGTCTCGGCCGGTGTCTCCTCCTGC
CGCCCAAGCTGCTGCAGCGGCGGCGGCGGCGGCGTCTGAGGCGGCGGTCT
GCTACTCCCCTACCTCGGCCTTGTCGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCACGCGTTGATGCGTGTGTGCCGGCCTCTGCTGCCTCCTTGGCGGC
TGCAGTTCAGGCGGAGGCGCGGAGAAGGGTGGACAAAATGATGGAAAGCC
CGGCGAGATGCGACCTCGAGTTCCAGCACCAGCCAAACGGCGAGAACACC
GATTGGAGTCGCCGTAACGTCCCCCCGCGTCATCGTGAGCAGGAAGCACA
CATGGGAGGCCCTGCGCGGCCGAGCTTGCCACCGCCTCGAGACTTTGAAC
ACCGCGTCAAAGACGGCGACACCGATAGCAGCAACACCAACAACAACTGC
ATCAACAATGACATCACTACCACCAACAACAAGAATGACACCAACCCCAC
CACACCAAACGGCGAGAACACCGATTGGAGTCGCCGTAACGTCCCCCCGC
GTCATCGTGAGCAGGAAGCACACATGGGAGGCCCTGCGCGGCCGAGCTTG
CCACCGCCTCGAGACTTTGAACACCGCGTCAAAGACGGCGACACCGATAG
CAGCAACACCAACAACAACTGCATCAACAATGACATCACTACCACCAACA
ACAAGAATGACACCAACCCCACCACA
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