mRNA_C-linearis_contig109.1124.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1124.1
Unique NamemRNA_C-linearis_contig109.1124.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:360144..360479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.613943-CDS-C-linearis_contig109:360143..3604791622927416.613943-CDS-C-linearis_contig109:360143..360479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 360144..360479 +
1690879689.1713498-CDS-C-linearis_contig109:360143..3604791690879689.1713498-CDS-C-linearis_contig109:360143..360479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 360144..360479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1124.1prot_C-linearis_contig109.1124.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 360144..360479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1124.1

>prot_C-linearis_contig109.1124.1 ID=prot_C-linearis_contig109.1124.1|Name=mRNA_C-linearis_contig109.1124.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp
PPSPRLPCACVPFPLPPHAPRCCPPLSWACGRVATPAAPCSCRFSAWRGK
KKKKRRHRCCLRRPPSPSLRSAGSSWCYRRRGRVVGGHRRERGGRGCCRE
IAACGRQHRFCR
back to top

mRNA from alignment at C-linearis_contig109:360144..360479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1124.1 ID=mRNA_C-linearis_contig109.1124.1|Name=mRNA_C-linearis_contig109.1124.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at C-linearis_contig109:360144..360479+ (Chordaria linearis ClinC8C monoicous)
CCTCCATCTCCCCGTCTTCCCTGCGCCTGTGTTCCATTCCCTCTGCCCCC
TCACGCTCCCCGCTGCTGCCCACCGCTCTCGTGGGCGTGCGGCCGCGTTG
CAACTCCTGCGGCACCCTGCTCGTGTCGTTTCTCCGCCTGGCGGGGGAAG
AAGAAGAAGAAACGCCGCCATCGCTGCTGCTTGCGCCGTCCGCCCTCGCC
CTCTTTGCGCTCAGCAGGGTCGTCGTGGTGTTACCGGCGTCGCGGGAGGG
TGGTGGGCGGTCACCGACGTGAGCGGGGCGGCCGCGGTTGCTGTCGAGAG
ATCGCCGCGTGTGGCCGGCAGCACCGCTTTTGTCGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig109:360144..360479+

>mRNA_C-linearis_contig109.1124.1 ID=mRNA_C-linearis_contig109.1124.1|Name=mRNA_C-linearis_contig109.1124.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig109:360144..360479+ (Chordaria linearis ClinC8C monoicous)
CCTCCATCTCCCCGTCTTCCCTGCGCCTGTGTTCCATTCCCTCTGCCCCC
TCACGCTCCCCGCTGCTGCCCACCGCTCTCGTGGGCGTGCGGCCGCGTTG
CAACTCCTGCGGCACCCTGCTCGTGTCGTTTCTCCGCCTGGCGGGGGAAG
AAGAAGAAGAAACGCCGCCATCGCTGCTGCTTGCGCCGTCCGCCCTCGCC
CTCTTTGCGCTCAGCAGGGTCGTCGTGGTGTTACCGGCGTCGCGGGAGGG
TGGTGGGCGGTCACCGACGTGAGCGGGGCGGCCGCGGTTGCTGTCGAGAG
ATCGCCGCGTGTGGCCGGCAGCACCGCTTTTGTCGCCCTCCATCTCCCCG
TCTTCCCTGCGCCTGTGTTCCATTCCCTCTGCCCCCTCACGCTCCCCGCT
GCTGCCCACCGCTCTCGTGGGCGTGCGGCCGCGTTGCAACTCCTGCGGCA
CCCTGCTCGTGTCGTTTCTCCGCCTGGCGGGGGAAGAAGAAGAAGAAACG
CCGCCATCGCTGCTGCTTGCGCCGTCCGCCCTCGCCCTCTTTGCGCTCAG
CAGGGTCGTCGTGGTGTTACCGGCGTCGCGGGAGGGTGGTGGGCGGTCAC
CGACGTGAGCGGGGCGGCCGCGGTTGCTGTCGAGAGATCGCCGCGTGTGG
CCGGCAGCACCGCTTTTGTCGC
back to top