mRNA_C-linearis_contig109.1117.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1117.1
Unique NamemRNA_C-linearis_contig109.1117.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig109.1117.1 vs. uniprot
Match: A0A6H5L7T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T0_9PHAE)

HSP 1 Score: 399 bits (1025), Expect = 1.390e-137
Identity = 195/233 (83.69%), Postives = 218/233 (93.56%), Query Frame = 1 
Query:    1 LPLPGLHEHFGQA-LSYDKMTAGTAALDQECAMDPAMAELRQHLIRHQISFCVFDMDLTVTAKHTRGALPRDPDTMRSYLDSGRATDAVQTMKLCRALGLTIGIATFQREVDDSSHIGGSHLVRRVLGAIGAGDLVSDRDVVALSPAQYAEMLRHQDGYTKNDMIRALFERRGEPYSPGTTLLIDDTRRNVEAFVRIGGHGLLVEGGQGLILQHAKVVEPSCTFVPGMSFSTA 696
            +PLP L EHF  A +SY  MTAG AA++QECA+DPAMAELRQHL+RH+I+FCVFDMDLTVT  HTRGALPRDPDTMRSYL+SGRATDAV+TMKLCRALGLT+GIATFQREVDDS+HIGGSHLVRRVLGAIGAGDLVSDRDVVAL+ +QY+EM+RHQ+ YTKNDMIR LFERRGE YSPG TLLIDDTRRNVEAFVRIGGHGLLVEGGQGLIL++AKVVEPSCTFVPG++FS++
Sbjct:    9 VPLPALREHFATAFVSYPNMTAGNAAIEQECALDPAMAELRQHLLRHRITFCVFDMDLTVTKMHTRGALPRDPDTMRSYLESGRATDAVKTMKLCRALGLTVGIATFQREVDDSAHIGGSHLVRRVLGAIGAGDLVSDRDVVALTSSQYSEMIRHQESYTKNDMIRVLFERRGEAYSPGNTLLIDDTRRNVEAFVRIGGHGLLVEGGQGLILRNAKVVEPSCTFVPGLTFSSS 241
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BLAST of mRNA_C-linearis_contig109.1117.1 vs. uniprot
Match: D8LKV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV2_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 1.330e-121
Identity = 173/198 (87.37%), Postives = 190/198 (95.96%), Query Frame = 1 
Query:   55 MTAGTAALDQECAMDPAMAELRQHLIRHQISFCVFDMDLTVTAKHTRGALPRDPDTMRSYLDSGRATDAVQTMKLCRALGLTIGIATFQREVDDSSHIGGSHLVRRVLGAIGAGDLVSDRDVVALSPAQYAEMLRHQDGYTKNDMIRALFERRGEPYSPGTTLLIDDTRRNVEAFVRIGGHGLLVEGGQGLILQHAKV 648
            MTAG AA++QECA+DPAMAELRQHL+RH+I+FCVFDMDLTVT  HTRGALPRDPDTMRSYL+SGRATDAV+TMKLCRALGLTIGIATFQREVDDS+HIGGSHLVRRVLGAIGAGDLVSDRDVVAL+ +QY+EM+RHQ+ YTKNDMIR LFERRGE YSPG TLLIDDTRRNVEAFVRIGGHGLLVEGGQGLIL++AK+
Sbjct:    1 MTAGNAAIEQECALDPAMAELRQHLLRHRITFCVFDMDLTVTKMHTRGALPRDPDTMRSYLESGRATDAVKTMKLCRALGLTIGIATFQREVDDSAHIGGSHLVRRVLGAIGAGDLVSDRDVVALTSSQYSEMIRHQESYTKNDMIRVLFERRGEAYSPGNTLLIDDTRRNVEAFVRIGGHGLLVEGGQGLILRNAKI 198
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BLAST of mRNA_C-linearis_contig109.1117.1 vs. uniprot
Match: A0A835YLM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLM2_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.330e-53
Identity = 97/203 (47.78%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:   55 MTAGTAALDQECAMDPAMAELRQHLIRHQISFCVFDMDLTVTAKHTRGALPR-DPDTMRSYLDSGRATDAVQTMKLCRALGLTIGIATFQREVDDSSHIGGSHLVRRVLGAIGAGDLVSDRDVVALSPAQYAEMLRHQDGYTKNDMIRALFERRGEPYSPGTTLLIDDTRRNVEAFVRIGGHGLLVEGGQGLILQHAKVVEPS 660
            MTAGTA      A D  +  +RQ+L  H I + VFDMDLTVT++H+ G L + D  T+ SY+DS R TDA+  ++LC  LG+ +G+ATFQ+EVDD++H+GG+ LVR+ L  +G  D + +  +VAL+  +Y  M+ +QD Y KNDM+R LFER G  + P  TLL+DDT RN+ AF  IGGHGL + G  G+ L +   V P+
Sbjct:    1 MTAGTAV-----AAD--LTAIRQYLQEHDIRYVVFDMDLTVTSEHSGGMLLKMDRMTLFSYMDSARDTDALAVIQLCAELGIRMGVATFQKEVDDAAHVGGTPLVRQALQRLGI-DAIEEGSIVALTREEYKVMVTNQDTYNKNDMLRTLFERWGVEFDPTHTLLVDDTVRNIRAFASIGGHGLAIHGHSGMQLDNVTFVSPA 195
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L7T0_9PHAE1.390e-13783.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKV2_ECTSI1.330e-12187.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YLM2_9STRA2.330e-5347.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:295558..299717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-11_005680.1
Exons4
Model size873
Cds size873
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1117.1prot_C-linearis_contig109.1117.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 295558..299717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927419.4199073-CDS-C-linearis_contig109:295557..2957851622927419.4199073-CDS-C-linearis_contig109:295557..295785Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 295558..295785 -
1690879690.987095-CDS-C-linearis_contig109:295557..2957851690879690.987095-CDS-C-linearis_contig109:295557..295785Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 295558..295785 -
1622927419.43527-CDS-C-linearis_contig109:296221..2965991622927419.43527-CDS-C-linearis_contig109:296221..296599Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 296222..296599 -
1690879691.0004394-CDS-C-linearis_contig109:296221..2965991690879691.0004394-CDS-C-linearis_contig109:296221..296599Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 296222..296599 -
1622927419.450993-CDS-C-linearis_contig109:299205..2993091622927419.450993-CDS-C-linearis_contig109:299205..299309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 299206..299309 -
1690879691.0088928-CDS-C-linearis_contig109:299205..2993091690879691.0088928-CDS-C-linearis_contig109:299205..299309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 299206..299309 -
1622927419.4669423-CDS-C-linearis_contig109:299554..2997171622927419.4669423-CDS-C-linearis_contig109:299554..299717Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 299555..299717 -
1690879691.0178802-CDS-C-linearis_contig109:299554..2997171690879691.0178802-CDS-C-linearis_contig109:299554..299717Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 299555..299717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1117.1

>prot_C-linearis_contig109.1117.1 ID=prot_C-linearis_contig109.1117.1|Name=mRNA_C-linearis_contig109.1117.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=291bp
LPLPGLHEHFGQALSYDKMTAGTAALDQECAMDPAMAELRQHLIRHQISF
CVFDMDLTVTAKHTRGALPRDPDTMRSYLDSGRATDAVQTMKLCRALGLT
IGIATFQREVDDSSHIGGSHLVRRVLGAIGAGDLVSDRDVVALSPAQYAE
MLRHQDGYTKNDMIRALFERRGEPYSPGTTLLIDDTRRNVEAFVRIGGHG
LLVEGGQGLILQHAKVVEPSCTFVPGMSFSTASPHATTTTGAAASAPHPH
QHHHQPHGAYPQQYHPQHHHQHHHQQHYPHQPPPPPAGYY*
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mRNA from alignment at C-linearis_contig109:295558..299717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1117.1 ID=mRNA_C-linearis_contig109.1117.1|Name=mRNA_C-linearis_contig109.1117.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4160bp|location=Sequence derived from alignment at C-linearis_contig109:295558..299717- (Chordaria linearis ClinC8C monoicous)
CTGCCCCTGCCAGGTCTCCACGAGCACTTCGGGCAGGCTCTCTCTTACGA
TAAGATGACGGCGGGGACGGCGGCGCTCGACCAGGAGTGCGCCATGGATC
CAGCAATGGCCGAGCTGCGGCAGCACCTCATCAGGCACCAGATCAGCTTT
TGTGTTTTCGACAGTGAGTTTGGTACACTTGTGGTCACACGTAGGGAGAG
AGACAGAGAGATCGAGGTCGAGGTCTCCTGTTGGTGCGTGTAAGACGGGC
AGCGAGAGAGGGGGGGAGAGACAGACAGACAACCGTAGTGAAGACTCGTC
CAACCGTTTTTGTACCCAAGGCAACCTTGGTCGCAGCGTCTTCGCTCTGT
TTGTGTGTGTCCTGAACCCCCCGTTTGCCCGTCCCGCCTCGACCGCGTCC
ACCGCCAGTGGACTTGACCGTGACCGCCAAACACACCAGAGGGGCGCTGC
CTCGCGACCCGGATACCATGAGATCCTACCTAGATTCTGGCCGTGCCACG
GATGCGGTACAGGTGGGCTATGTACGAAGACAGCACGTGGCAGCAATCCA
ATCCAACCCCCAGCTTTTTGCTAGAGGTGGTCTGGCAGCAAAATGCTTGC
GTTTGCATCACCACAAACAAACGTGGAATGTGGAATGTTTTGCAGTGACT
GGCGTTTCCTCGCGGTGATTGTTTTTTGGGTGTGTGTGGGTGACAGCTTG
GGTGGTGTTTGTCTTGTGCGTGTCTGGTGTGCCTGGTTGTGCTCATGTGT
GTGCTTCAAAAGCACTACCCCCCCCCACACCTAGCGCATGTTTCCCTGCC
AGTGTCTTTCTCTCTCTCCCTGCTAGCGCAACAACCTCTTATAACTCAAG
TCCTTCCCCTCTCCGCCGTGTCTGGTTTCAAACTTTCAAAAGTTTCAAAA
CTCTCCTCTTTGGTTCGAAACCCCATCCCTGCCCGCTCTTTCTCTCGACG
GCCGTTGGATCCGTGCACGCAACTTGCTCCCCAGCAAATTAAAAAATTAA
AGAACAAGAAAAAGAGGGGTTGGTTTTACCTGCGGTGTTAGACAACAATT
TGCTAAGCAGTCAGCGCTAACTGCTTAGCTCAGTGGATATGTTGTACTTT
TGTTTGACAACAACTATCCACACTAAACAGTCAGCACTGACTGCTTAGCT
TGTGGATAGAGCTCAGTGGATATGTTGATACTTCGAAGTATGTTGTCATC
TAACATGCGGGATGGGGCGTGTATGATACGGCGATACGGCGGTACGCAAC
CACCCGCCTTTTGGAATCCACGTGGCAAAAACTAAAACTCTGTGGACAAC
CAAGGACAACACATGTCTAGTCTATGTGGTGTTTTCTCTCTCTCCGCGAA
ACTATAAAGAACGCTGTTACTTCTTCTACGGCGCACCTTTTGTGCGAACT
GGGGAGGTGGGGAGATCCAACGTACTGGTGCATACATTCCGTAGACCTAG
GTTTGTGTGGCCGCTGACGATAGACGTGTGCTTTCGCCGGCGTCGTGTTT
TCAGCGTAAAATTTTAAATTTATGCTGGGTGAAGTTTCCTGTGCGACCTC
CTTGGTAGTTGGACGGCCGGCTCGCAGCGTCGTTTGTGGGTACAGAAAGC
TCCCCACATTGTGCTGCCCTCTGTTCCTGCTTCCTGCACGTCTCTCGCGA
CACGCCGCCAGCACATCAGAACAACATGAAACTGGTGTTTATATCCGGGA
TGGGGGAAACCGGGTCCCCGTAATTACCGGTAACATAGTGGCGGGTAGGT
AACATGGTTTTTCCCGGGTTATTTGCGGTTATTTTTGCGGTGCCCCTGCA
TACCCCGCCTGTCACCACCAGTATTTTAGCGAACAGAGGCGAAGAGAATG
GAGAATGTTTCCTTTTGGCTTCCTGTGTTCTGTGTGTACTTTGTGCTCTG
TGGTAGCGGTGCAGCTGTGGGCGGGGTACATACATACAGATACGAAACAT
AATATAAAAAACAAAAACATTCGAACAGTCTTCTTGTACAGTTTATAGTT
TATAGTTTACTCCGTATATCATAGCAGCAGCACTCGACAACTATCCTGCC
ATATTTCGTCGAGGAACGCGAAGAGCAAAGGACAAAGCTAGACCCAGAAC
CCAGAACCCCCAGAGATGAGGTACAGAACCCCCGGGGGGGGGTGGTGCAG
CTACACACGGAACCCCCGGGGATGGGGCCCTTTCGTCCCCTTGCGGTAGC
GGTAATTACCGGTAGGTAACATCAATTCCTGATTTGAGGTAATAACCGGT
AGGTAACATGGAAATCTGCGGTTTCCCCCATCCCTGGTTTATATACTTCG
TATGTAGGTATAAGTCGCATAAGTATGTCGCAGGTACATACGTGCAGCTT
GCCTTTCCCCAAAATGAGTTGTGTGTTGTGTGTGAGAGAGAGGGAGAGAG
AGAGAGAGGTTCTGCGTCGGATGGGTGCATGAACTGAAAAAAAGAGAGAG
CGAAGTTACAAACCATTGGTATTGATTTTATTATTTCAGTCAGGATTCTG
AGGCTCCCTGTGTCTCGTGGTCACCGTATGCACCCAAAACGCAATGAATG
GCCAGCCAACGGGTGGATGTCTGCTCTGGCCTAGATGGTCAAAGGAGAGG
GGACAATGCCGGCCGATCCGTTGACCAAAATATATGACACAGGAAGATGT
AGTCTTGATACCCTGTAGATTAAAAGTCTATTTTCGTCAAGAACGGAAAG
GGTGGGAGGTTCTTTTCGTCTTTTCCGCCTCGAGACTTTGGCGGGAGCCT
ACTTTCCGCAGCGTCAGTCAGAGGAGGTGGCGCACGTGCGTACCCAGTCT
CTCTGTTCCCTCTCCACTCGCCTACGATTTCTCCCCACGCACAACTTAAT
GCCAACCCAGTGTAATCCCTCAACCAAAGCCAACCCAAGCCAACCCCAAA
CCCAATCCAAACCAACCTCAACCCCATCCAGACCATGAGGCTCTGCCCAA
ACCACCCGACCTACTACTACTCTGTGAACCACTCAACCCGATGTTCTCCC
TCTCAAACCCCACCCAACCTAACCCAAACCATAAAGCTCTGCCCAGGCCC
GACCTACTGCTGTAAACCGACTCCAAGCTGACACATAATCTCCCTCAACC
CAACCCAACCCAACCCAGACCATGAAGCTCTGCCGGGCCCTCGGCCTGAC
GATCGGGATCGCCACCTTCCAGCGCGAGGTGGACGACTCCTCTCACATCG
GCGGCTCCCACCTGGTCCGCCGCGTCCTGGGGGCCATCGGCGCGGGAGAC
CTGGTGAGCGACCGGGACGTGGTGGCGCTCTCGCCCGCCCAGTACGCCGA
GATGCTGCGGCACCAGGACGGCTACACGAAGAACGACATGATCCGCGCGC
TCTTCGAGAGGCGAGGGGAGCCCTACTCGCCTGGCACCACCCTGCTCATC
GACGACACACGGAGGAACGTCGAGGCGTTCGTGAGGATCGGGGGGCACGG
GCTCTTGGTGGAGGGGGGGCAGGGGCTGATCCTGCAGCACGCCAAGGTGG
GTTGGGTTGGGTGGGTGAGTGGGTGTGGGGGTTCCGTGTGTTATGTACGG
CGGGGGGGTCGGGACAGCGCGTGGGGGGAGGAGGGTGGGGAAGTGGAAGA
CATGTTTGTGGAAGACATGAAGGACGGGAATGGGTCTTGATTGCTTTGGG
GGGGGGGTCGTGGTTTTGCCTCCCCCTTTTCCTATCGAGACATTCGTCCG
TCCATCCGCGGTAAGCAGCCAAGAGGAGGGCCTTGCCTGTACCCTGGGCC
CCTGATTTTTGTCGGTGTGACAGCACGCGTGCGCGCGAAAAGGCACGACC
ATCTGTCACCCGTGTTCTTTCGAAGTGTCACTCTGCCCCCCTTCGATCGC
CTTTTTCGTGCGTCTGCATCCTCCTCCTCACGACTCTTAATTTTACTACA
TTCTCTTTTCCCTTCCTTCCTTCCTTCATCAGGTGGTGGAGCCGAGCTGC
ACCTTTGTGCCGGGCATGTCCTTCTCGACGGCCTCGCCCCACGCCACCAC
CACCACAGGGGCCGCCGCGTCGGCGCCGCACCCCCACCAGCACCACCACC
AGCCGCACGGCGCGTACCCGCAGCAGTACCACCCGCAGCACCACCACCAG
CACCACCACCAGCAGCACTACCCTCACCAACCGCCACCGCCGCCGGCCGG
GTACTACTGA
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Coding sequence (CDS) from alignment at C-linearis_contig109:295558..299717-

>mRNA_C-linearis_contig109.1117.1 ID=mRNA_C-linearis_contig109.1117.1|Name=mRNA_C-linearis_contig109.1117.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at C-linearis_contig109:295558..299717- (Chordaria linearis ClinC8C monoicous)
CTGCCCCTGCCAGGTCTCCACGAGCACTTCGGGCAGGCTCTCTCTTACGA
TAAGATGACGGCGGGGACGGCGGCGCTCGACCAGGAGTGCGCCATGGATC
CAGCAATGGCCGAGCTGCGGCAGCACCTCATCAGGCACCAGATCAGCTTT
TGTGTTTTCGACACTGCCCCTGCCAGGTCTCCACGAGCACTTCGGGCAGG
CTCTCTCTTACGATAAGATGACGGCGGGGACGGCGGCGCTCGACCAGGAG
TGCGCCATGGATCCAGCAATGGCCGAGCTGCGGCAGCACCTCATCAGGCA
CCAGATCAGCTTTTGTGTTTTCGACATGGACTTGACCGTGACCGCCAAAC
ACACCAGAGGGGCGCTGCCTCGCGACCCGGATACCATGAGATCCTACCTA
GATTCTGGCCGTGCCACGGATGCGGTACAGTGGACTTGACCGTGACCGCC
AAACACACCAGAGGGGCGCTGCCTCGCGACCCGGATACCATGAGATCCTA
CCTAGATTCTGGCCGTGCCACGGATGCGGTACAGACCATGAAGCTCTGCC
GGGCCCTCGGCCTGACGATCGGGATCGCCACCTTCCAGCGCGAGGTGGAC
GACTCCTCTCACATCGGCGGCTCCCACCTGGTCCGCCGCGTCCTGGGGGC
CATCGGCGCGGGAGACCTGGTGAGCGACCGGGACGTGGTGGCGCTCTCGC
CCGCCCAGTACGCCGAGATGCTGCGGCACCAGGACGGCTACACGAAGAAC
GACATGATCCGCGCGCTCTTCGAGAGGCGAGGGGAGCCCTACTCGCCTGG
CACCACCCTGCTCATCGACGACACACGGAGGAACGTCGAGGCGTTCGTGA
GGATCGGGGGGCACGGGCTCTTGGTGGAGGGGGGGCAGGGGCTGATCCTG
CAGCACGCCAAGACCATGAAGCTCTGCCGGGCCCTCGGCCTGACGATCGG
GATCGCCACCTTCCAGCGCGAGGTGGACGACTCCTCTCACATCGGCGGCT
CCCACCTGGTCCGCCGCGTCCTGGGGGCCATCGGCGCGGGAGACCTGGTG
AGCGACCGGGACGTGGTGGCGCTCTCGCCCGCCCAGTACGCCGAGATGCT
GCGGCACCAGGACGGCTACACGAAGAACGACATGATCCGCGCGCTCTTCG
AGAGGCGAGGGGAGCCCTACTCGCCTGGCACCACCCTGCTCATCGACGAC
ACACGGAGGAACGTCGAGGCGTTCGTGAGGATCGGGGGGCACGGGCTCTT
GGTGGAGGGGGGGCAGGGGCTGATCCTGCAGCACGCCAAGGTGGTGGAGC
CGAGCTGCACCTTTGTGCCGGGCATGTCCTTCTCGACGGCCTCGCCCCAC
GCCACCACCACCACAGGGGCCGCCGCGTCGGCGCCGCACCCCCACCAGCA
CCACCACCAGCCGCACGGCGCGTACCCGCAGCAGTACCACCCGCAGCACC
ACCACCAGCACCACCACCAGCAGCACTACCCTCACCAACCGCCACCGCCG
CCGGCCGGGTACTACTGAGTGGTGGAGCCGAGCTGCACCTTTGTGCCGGG
CATGTCCTTCTCGACGGCCTCGCCCCACGCCACCACCACCACAGGGGCCG
CCGCGTCGGCGCCGCACCCCCACCAGCACCACCACCAGCCGCACGGCGCG
TACCCGCAGCAGTACCACCCGCAGCACCACCACCAGCACCACCACCAGCA
GCACTACCCTCACCAACCGCCACCGCCGCCGGCCGGGTACTACTGA
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