mRNA_C-linearis_contig109.1114.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1114.1
Unique NamemRNA_C-linearis_contig109.1114.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:267614..272392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size433
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1114.1prot_C-linearis_contig109.1114.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 267614..272321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.1264458-CDS-C-linearis_contig109:267613..2679271622927416.1264458-CDS-C-linearis_contig109:267613..267927Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 267614..267927 +
1690879688.986235-CDS-C-linearis_contig109:267613..2679271690879688.986235-CDS-C-linearis_contig109:267613..267927Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 267614..267927 +
1622927416.1372159-CDS-C-linearis_contig109:272275..2723211622927416.1372159-CDS-C-linearis_contig109:272275..272321Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 272276..272321 +
1690879688.9993985-CDS-C-linearis_contig109:272275..2723211690879688.9993985-CDS-C-linearis_contig109:272275..272321Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 272276..272321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.1493757-UTR-C-linearis_contig109:272321..2723921622927416.1493757-UTR-C-linearis_contig109:272321..272392Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 272322..272392 +
1690879689.0069892-UTR-C-linearis_contig109:272321..2723921690879689.0069892-UTR-C-linearis_contig109:272321..272392Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 272322..272392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1114.1

>prot_C-linearis_contig109.1114.1 ID=prot_C-linearis_contig109.1114.1|Name=mRNA_C-linearis_contig109.1114.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=120bp
PSLPSAPHCIPPSEVTLSHTHARYNPPIPPSNALLAGALPVQPFFFLQPR
EKAVAFPLAEGLDYGFTRERAISQCCARCVQPNHGRGSGARGVQDLRASV
PASVRCHHSRPTSRRRAHM*
back to top

mRNA from alignment at C-linearis_contig109:267614..272392+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1114.1 ID=mRNA_C-linearis_contig109.1114.1|Name=mRNA_C-linearis_contig109.1114.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4779bp|location=Sequence derived from alignment at C-linearis_contig109:267614..272392+ (Chordaria linearis ClinC8C monoicous)
CCCTCCCTACCCAGTGCACCACACTGTATCCCGCCGAGTGAAGTGACTCT
CTCTCACACACACGCCAGGTACAATCCACCGATACCACCTAGCAACGCTT
TGCTTGCTGGCGCTCTTCCAGTTCAGCCGTTTTTTTTTCTGCAACCAAGA
GAAAAAGCGGTTGCATTTCCCCTCGCAGAAGGTTTAGACTACGGTTTCAC
ACGAGAGCGCGCCATATCCCAGTGCTGTGCTCGCTGTGTTCAGCCCAACC
ATGGCCGTGGTTCCGGAGCCAGGGGCGTGCAAGACTTACGAGCTTCTGTC
CCAGCGAGCGTGCGGTGAGAAAAAATCTACACGCGAGAGTTGTTGGCTCC
GAAACTATGGATGCATGTATTATGTGCCGTTCCCTTGTTTTGAATTTCAG
ATGCTGCTGCTTTATGTTTGTGGTGTGTTGTGATGTGTGATGCTCACAAG
CCACAAACTCGAGCCATGCTGACCGGAAAAGCACCCACCACCAGATGGAA
CACAAGTTGTCTCCACGAACTCATAGGACGCGGGCGATGCTAGTTCAAAT
TTCGAAAATCTCGCGCCCTTGCGCGCTAGACAGAAACGGAGTTAGGGATT
CGCGCGCGTGCTCGCCGATGTCCCTGCGTCCGCCGTCTGCCTCCTTCCCT
CCGACGACATGGCATGAGCGAGCATGTGCTTGCCTCCAGAAGCACATGCA
ACCTATGGTGACGCGCGTCTGGGAGAAAGGGGTCGATCCAAGTGTGCTAC
CATCTACCATGGTGACATCTACCTGTTGTAAGATCTGTCTTCTCAAAAAA
TTTGAATTTAAATACGCACCAGTCTCCCTTCTTCCCCTCGCTGCCTTGCC
AAGGCTTTTGCTTAGGCATGGCCCATAGCGAGGGGGGGGGTCTTTCTAGC
GAGCAAGGCTAGACTCACCCTCAGGGTCACCCTCGGGTGGACCGATACCT
TCTTGCTGCTGCGCACCCGCCGCGAGGCGTGCGCAGCGGTGGAATTGGGT
CGGCACTGGTGCGTCAGGCACAAAAGTTCAGATGCACGGGTCTTTATGGC
CGTCGGGGTAGACAGCAATGTCCATCTCATTTTGTGCGCGGAGGCAGACG
CCACCAGAAAGAAGGTGAACGGACACGTACACGGCCCTAGGTTTGCTAGA
GGGAGCTGTACTGTCTCGGTAACCTGGCTTCGCTGCGCCATTTAAGGAGG
ATGGATGGGTAGCCACGAGCTGAAGACTGGGCTGGTTGACCCCTTCGGCG
CGAGAAGTGTTTTTTGAAGACCAAGCACCCTAAGTGCAACGAGGGAGAAA
GCGAGGGACCGGCTGGGAAGGACAGCGACGAGAGCGTGTACGGACGGAGC
GGGTCGAGTGTGGTCGTGCTAGGACTGGCCACAGCGGCACCGGAGCAGCG
GCACCAGATGCATGCAGACGACATTGAGCCGTGGCGCACAAACATCATGT
GTTGACAATTATTTGTTTTTTTTTTCTGGATGGATGTTGGTGCTGTGTTT
TTGTGACGACGTCACTGGTTTTGTAGAGAGACGCGACAGCGATGGCGCGG
ATACCCCGGGTGCCTTAAGTGTGTACCTGCATCGTGGATTCCTTATCAGT
GTCGATGTTTACAATACTTTACTACTGTGCCTAACACAGACGTTCGGGAT
AGACTCGGGTAATTGTCAATTGATGTGATGCCTTTGGTTGGCTGTTCTTT
TTCACTGTATGTCCGCGGAATGTCATTCGGGCAGCACTTCAGACAGCAGC
TGCGTGCTCCATCCTTGTTCCCACGCCTACCGTGTGTTTTTGTACAGACA
GCACTTCAGACAGCAGTTCCGCTGTAGTCGGCTAATTCATGGGTAGGAAG
TGGGAACGGGGGGGGGCGATGCTGCTGTAGTCGAATGGAGATTGCGGGCG
TGCAGTTCAGATTTGGACACGCATAACTTGCTGTAGGTATACGAAGTATA
AGGTGTACCTCTTCGGGCTTGTGTACCCTTTCCCTGCTAAAAGTGTGCGT
GTTCTTTAGGATTCTCTGATGGCTCTAGCACTTTGTGACCACGGGCTGTG
ATCTTGCTAGATTCTAGGGATTAGCAACTGTAACGAGTTTAATGTGAAGA
CAACAACAACAACAACAACAACAACAACAACAACAACCAGTAATGTTCTG
TGCTATGTACATGCACCTACACAGGTAGATTTACCAGTGTATATAGAATA
TAGCAGCAGTTATCGCAGCCAAGCGACGAAGTTGTCCGGCCGCATCGCGC
AAAGCGCCGATTAGTTGTGACTTATGAAGAGAAGACCTATGTTGACACCT
TGGTGGTACATTTATCTATGCTTTTGCCCATCGAGCAGCAGTGGCGAGCA
CTACCTAAATAGTGGCGTTGGAATTGGCTGCGCCACTCACTCCGCACAAG
GTCAAGATTTGCAGGGTGGTACGTGGTATTGTGATGGGATGGTAATGGGT
TCGGAATTTTGGTCCCATCACAAGATACCATCCCATCACACCACGCCAGT
CGGAGATACCATCAGTAAATAGGTTATGGTTTTTGAACGTTTCCCGTCCC
ATCTAAATTACCACCACGCCAGTCGGTGACACCATCAGTAAAGAGGTGGT
GGTTTTTGAATGCTTCCCATCCCATCTAAATTGCCATTACAGCTACTGAA
GTTACCACCATCCCATCGATAACAACAGTCTTCTCCCACCCATTCCTCTT
TTCAGAGATTTACCACGAATACCACCCCATGCATTTGCACCTCCCCCTCC
CCCCCATCCAGCACAACGTACTTTCTGATGGAGGGGTGTGTATGGGCAGG
AAATGTGTGGGATAGGGGGGGCAGGGGGTTCGACCCGCTGCATACACACA
CACACGCAAAAAATCTACCACACAACACATGGCCACTACCCCTACCGCCG
ACGTGGGCAGCAGCGGGTCGGTGACACCAGTAACGTTGTAGTGCCTGTCG
CTGGCCGCATATGTGTGTTTGCTAGCACGTTTGTACGCAGGCGTAGATAC
CACAAGTTGCCAAGCGGAGAGGAAATTTTCCGCCCTCAAGCAGGTCCTTA
GTGACATGCGTGCCGGTGCCCTGCCCCGTAAGATCGAGCAGATACTGTTG
CTCAGGCTTAACAGGCGCCTCATCCCTGACTTTGATAAAAGTAGAGCAAG
AGCTAGCCGCATTGAAAGCGAAGCACGATGCCATCGCAAAGGCGGCGGTT
ACCGCCCAGCAAGCTAGGGAAGGGAACACTGTCACCCTGAACAAGTAGGG
TAGGGCTGCTGTCTTGTCACGTTTCAATTACCATTTTTTGGTTTTGGTGT
TTAGCGTTTGTTTTTGCGTATTGTGGCCAGAACTTTAAGAACCGTAGCAG
TGAAACTTCGGCTGGAGTTAGTTGAGTGCCTGCAGTTGGCTGTGGTCTAA
AACACGTTCTATTAAGATCAGCCGATTTTTATCGTTTTTGATGGATAGAC
GGAAGTAGATTAGTCTCGTTTTAATACGCTGTTGTAGTATTTTGAAAATA
CTATATACTCCGGAGTACCTGGTAGTATTTTCGTAATTTGTAGTTTCCAT
CCAGGGCGACAACTTACTACACTTTCCTGTTGTTGTGTATATGCCAGCTG
GTATATGCAAGCGGGAGGGTGGTAGCATTGGTAACACCTCTGTGTACCAG
AGTTTTTTGTGTTACCATCTTCTCGTCACCACGCCAAGGCAAAAGCTCTC
CCATCCCATCATACTCACCGTCCCACCAGTTACCATCCCATCCCATCACG
CGAAACCACCAGTTACCATCCCATCCCATCACGCGAAACCATCAGTTACC
ATCCCATCCCATCACGCGAAACCATCATTTACCATCTCATCCCATCACGC
AAAACCATCATTTTGCATCCCATCCCATCACGACAAGCACGATACAATCC
CATCCCATCGTGATACCATCAGAAGTGGGCACAAATACCATCCCATCCCA
TCACGACAAGTATGATACGATCCCATCCCATCTTAACACCATCAGAAGTG
GGCGCAAATACCATCCCATCCCACGTGATGGGAGGCCTAAATATTTTTCC
ACCTGCGGTGGCCTTCCATCCCGATGGGATGGTACGTGGCGCCGCAGGCG
CCACGTACCACCCTGCATTTGACCTTGCTTTCGGCAGTTTTTTTTTAAAT
CCGTTCCAGATTGAACTAGCGCTGCATTGTCTTGTGCATCTCTCGCCGCC
GTCAGAACGAGAGAGTTCGCCCTACTTCTAGCATTATCATGGGCGGGAAC
AAGGCAGTAAGTACAGCAGAGGGGTGGTGATGCTTACCGTCGGCTGCCGC
GTGCGTGTTTCGATCGCAATCCATATGCACATACATAGACTACGCTTGTC
TTCCATGGGCCGGACTATCCGATGACTCTGCAACAGGCGAAGATAAAAAA
ACCTTGGCGTGTGCGGATCATTTTCATCCCGATCCAATAAAACCCGCGGC
AGACCACACGTACATGGCGAGTTTGCAGTTTATCCTTGAACACAGCCACG
CAACACCGATCGCTGACACCTTGCTGCCCATCGCACGCCCCTCTACGATG
CACACCATCGCACCGGCTCCTACTGATCCCACCGTCGCTCCGATCTTTCT
TCCCTCTGCTCCCTCCCCGCCGTTCCTGCTCTGCTGACCACGACGAAACC
GAAAAACCTCAGGTGCCATCACAGCCGCCCAACCAGCCGGCGCCGAGCCC
ACATGTAACCCCACCCGCCTCAGCTCGCCTAAGAAGCGCAGCAGGCAGTG
CGAGCGTCGGGAACAAGGCATGCTACCGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig109:267614..272392+

>mRNA_C-linearis_contig109.1114.1 ID=mRNA_C-linearis_contig109.1114.1|Name=mRNA_C-linearis_contig109.1114.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at C-linearis_contig109:267614..272392+ (Chordaria linearis ClinC8C monoicous)
CCCTCCCTACCCAGTGCACCACACTGTATCCCGCCGAGTGAAGTGACTCT
CTCTCACACACACGCCAGGTACAATCCACCGATACCACCTAGCAACGCTT
TGCTTGCTGGCGCTCTTCCAGTTCAGCCGTTTTTTTTTCTGCAACCAAGA
GAAAAAGCGGTTGCATTTCCCCTCGCAGAAGGTTTAGACTACGGTTTCAC
ACGAGAGCGCGCCATATCCCAGTGCTGTGCTCGCTGTGTTCAGCCCAACC
ATGGCCGTGGTTCCGGAGCCAGGGGCGTGCAAGACTTACGAGCTTCTGTC
CCAGCGAGCGTGCGCCCTCCCTACCCAGTGCACCACACTGTATCCCGCCG
AGTGAAGTGACTCTCTCTCACACACACGCCAGGTACAATCCACCGATACC
ACCTAGCAACGCTTTGCTTGCTGGCGCTCTTCCAGTTCAGCCGTTTTTTT
TTCTGCAACCAAGAGAAAAAGCGGTTGCATTTCCCCTCGCAGAAGGTTTA
GACTACGGTTTCACACGAGAGCGCGCCATATCCCAGTGCTGTGCTCGCTG
TGTTCAGCCCAACCATGGCCGTGGTTCCGGAGCCAGGGGCGTGCAAGACT
TACGAGCTTCTGTCCCAGCGAGCGTGCGGTGCCATCACAGCCGCCCAACC
AGCCGGCGCCGAGCCCACATGTAAGTGCCATCACAGCCGCCCAACCAGCC
GGCGCCGAGCCCACATGTAA
back to top