mRNA_C-linearis_contig109.1108.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: D8LKT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT8_ECTSI) HSP 1 Score: 341 bits (874), Expect = 1.300e-113 Identity = 193/335 (57.61%), Postives = 229/335 (68.36%), Query Frame = 1
Query: 1 QVRRERESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAK--------DDVMPLTLAEQDLPTDGNDTSSSTTATLPAEDDIAKETTA-----------RHSFIVGSSCRPLPNGSEKAEERKESVLLQDSEHGKGVEGIEAGGTEKARSSLPVA---CHQH-QRTISSRARICGLLVERGARRTWRRAPSEQQVALHKKYAALLEDDDGRNLCTFSG 936
QVRRER+S P KTE M+R+GQLLVRFAREG+LR++D++ CPR EML WF+VRMFKEAC HN LQT+ FM +HGLDV+FHAVLEAVHWLVDGCDEE+DG DV+PA++FLV EAGMPPD QRKSD+RTPLH+AV+RGLFE A RLIELG D+NAVAK DVMPLTLAE+ TDG + T+ A DD+A + A R+ R E+ + + L + G E GG ARS P + C + R ++SRARIC +LVERGARR WRRAPSE+QVAL KKYA LLE DDGRN CTFSG
Sbjct: 10 QVRRERDSDPIKTELMMRRGQLLVRFAREGRLRDMDQVSRSCPRGEMLAWFTVRMFKEACAHNHLQTMRFMVDHGLDVEFHAVLEAVHWLVDGCDEEQDGIDVVPAIDFLVTEAGMPPDVQRKSDFRTPLHVAVRRGLFEAARRLIELGADVNAVAKMAPLGNAKGDVMPLTLAEEPAETDGFRATDDTSP--EAGDDVATKGKAAEIAAGAAAVNRYHLTRNDGARDEQGVREEDHDVERMSLAAERGRQCGEETSHVGGVG-ARSPSPSSRSLCRRRWSRVMASRARICEILVERGARRGWRRAPSEEQVALDKKYAVLLEGDDGRNFCTFSG 341
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: A0A6H5L1X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X8_9PHAE) HSP 1 Score: 311 bits (796), Expect = 3.720e-101 Identity = 185/344 (53.78%), Postives = 222/344 (64.53%), Query Frame = 1
Query: 4 VRRERESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAK--------DDVMPLTLAEQDLPTDGNDTSSSTTATLPAEDDI-----AKETTARHSFIVGSSCRPLPNGSE-----KAEERKESVLLQDSEHGK--GVEGIEAGGT-------------EKARSSLPVACHQHQRTISSRARICGLLVERGARRTWRRAPSEQQVALHKKYAALLEDDDGRNLCTFSG 936
VRRER+S P KTERM+R+G+LLVRFAREG+LR++D++ S CPR E+L WF+VRMFKEAC HNRLQT+ FM +HGLDV+FHAVLEAVHWLVDGCDEE+DG DV+PA++FLV EAGMPPD VQRGLFE A RLIELG D+NAVAK DVMPLTLAE+ T+G + T+ A DD+ A E A S + G NG+ + EE + +E G+ G E GG+ + SS + + R +SRARICG+LVERGARR WRRAPSE+QVAL KKYA LLE DDGRN CTFSG
Sbjct: 60 VRRERDSDPIKTERMMRRGKLLVRFAREGRLRDMDQVSSSCPRGEILAWFTVRMFKEACTHNRLQTMRFMVDHGLDVEFHAVLEAVHWLVDGCDEEQDGMDVVPAIDFLVTEAGMPPD--------------VQRGLFEAARRLIELGADVNAVAKMAPLGNAKGDVMPLTLAEEPAETNGFRATDDTSP--EARDDVGTEGQAAEIAAGASAVNGYYYLTRNNGARDEQGVREEEHDVERMSLAAERGRQCGDETSHVGGSGXXXXXXXXXXXXXXSPSSRSLCRRRWSRVTASRARICGILVERGARRGWRRAPSEEQVALDKKYAVLLEGDDGRNFCTFSG 387
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: D0MS03_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MS03_PHYIT) HSP 1 Score: 111 bits (278), Expect = 1.740e-25 Identity = 59/161 (36.65%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 16 RESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAKDDVMPLTLA 498
RE P E +V G+LLV F R G LR + +ML +++VRMF+EAC R+ + FM +G D++ + + +H +++ D + E V P + FL+ +AG+ + QRK+D T LH+A + L+ +A+ L+ G D+NA+A DD MPL A
Sbjct: 20 RERDPESAENLVANGKLLVDFVRNGNLRALQCAAEHLGEGQMLIFYAVRMFREACAGRRMDILQFMLLNGFDLQQSYMRDILHSVIENVDSPQSAEAVQPLIRFLL-DAGVDVNWQRKADLYTALHVACCKNLYPIAYLLVLYGADVNAIAADDSMPLVCA 179
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: A0A225W5B3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W5B3_9STRA) HSP 1 Score: 111 bits (278), Expect = 3.320e-25 Identity = 59/161 (36.65%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 16 RESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAKDDVMPLTLA 498
RE P +V G+LLV FA G LR + V ++L +++VRMF++AC RL + FM +G D++ ++ + +H +V+ D + + P + FL+ +AG+ + QRKSD T LH+A + LF +A+ L+ G D+NA+A DD MPL A
Sbjct: 20 RERDPESAANLVANGKLLVEFAHNGNLRALQCAVEHLEEGQVLIFYAVRMFRDACTMRRLDVLRFMLLNGFDIQQSSMKDILHTVVENVDSLQSADATQPLIRFLL-DAGVDVNWQRKSDLYTALHVACCKNLFPIAYLLVLYGADVNAIAADDSMPLACA 179
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: W2QEL4_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QEL4_PHYPN) HSP 1 Score: 111 bits (277), Expect = 4.170e-25 Identity = 68/204 (33.33%), Postives = 113/204 (55.39%), Query Frame = 1
Query: 16 RESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAKDDVMPLTLAEQDLPTDGNDTSSSTTATLPAEDDIAKETTARHSFIVGSSCRP 627
RE P +V G+LLV F R+G LR ++ +ML +++VRMF+EAC RL + FM +G D++ + + +H ++D D + + V P + FL+ +AG+ + QR SD T LH+A + L+ +A+ L+ G D+NA+A +D MPL A N+ +TT T ED+ A+++ +F++ + RP
Sbjct: 20 RELDPESAANLVANGKLLVDFVRDGNLRALECAAEYLEEGQMLIFYTVRMFREACATRRLDILRFMLLNGFDLQQSYMRDVLHSIIDNIDSPQSADAVQPLIRFLL-DAGVDVNWQRTSDLYTALHVACCKNLYPIAYLLVLFGADVNAIAANDSMPLACA--------NNIGKTTTLT---EDEQAQKSLLV-AFLIENQARP 210
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: A0A329SY44_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SY44_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.450e-24 Identity = 68/204 (33.33%), Postives = 106/204 (51.96%), Query Frame = 1
Query: 16 RESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAKDDVMPLTLAEQDLPTDGNDTSSSTTATLPAEDDIAKETTARHSFIVGSSCRP 627
RE P +V G+LLV F R G LR + ++L +++VRMF+EAC RL + FM + D++ + + +H +++ D + + V P + FL+ +AG+ + QRKSD T LH+A + L+ +A+ L+ G D+NA+A DD MPL A S T TL +D KE SF++ + RP
Sbjct: 20 RERDPESAANLVANGKLLVDFVRNGNLRALQCAAEHLEEGQVLIFYAVRMFREACETRRLDILRFMLLNSFDLQQSYMRDILHNIIENVDNPQSADAVQPLIRFLL-DAGVDINWQRKSDLYTALHIACCQNLYPIAYLLVIYGADVNAIAADDSMPLACAN----------SIGQTTTLTEDDQTQKELLV--SFLLENQARP 210
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: A0A6A3S9Q7_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3S9Q7_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.640e-24 Identity = 58/161 (36.02%), Postives = 92/161 (57.14%), Query Frame = 1
Query: 16 RESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAKDDVMPLTLA 498
RE P +V G+LLV F REG LR + +ML +++VRMF+EAC RL + F+ +G D++ + + +H +++ + + V P + FL+ +AG+ + QRKSD T LH+A + L+ +A+ L+ G D+NA+A DD MPL A
Sbjct: 20 REQDPESATNLVANGKLLVDFVREGNLRALQCAAEHLEEGQMLIFYAVRMFREACALRRLDILRFLLFNGFDLQQSYMRDILHGVIESIHSPQSADAVQPLIRFLL-DAGVDVNWQRKSDLYTALHVACCKNLYPIAYLLVLFGADVNAIAVDDAMPLACA 179
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: A0A833TEN5_PHYIN (Ankyrin repeat n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TEN5_PHYIN) HSP 1 Score: 111 bits (278), Expect = 1.320e-23 Identity = 59/161 (36.65%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 16 RESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAKDDVMPLTLA 498
RE P E +V G+LLV F R G LR + +ML +++VRMF+EAC R+ + FM +G D++ + + +H +++ D + E V P + FL+ +AG+ + QRK+D T LH+A + L+ +A+ L+ G D+NA+A DD MPL A
Sbjct: 20 RERDPESAENLVANGKLLVDFVRNGNLRALQCAAEHLGEGQMLIFYAVRMFREACAGRRMDILQFMLLNGFDLQQSYMRDILHSVIENVDSPQSAEAVQPLIRFLL-DAGVDVNWQRKADLYTALHVACCKNLYPIAYLLVLYGADVNAIAADDSMPLVCA 179
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: A0A0P1A917_PLAHL (Ankyrin repeat-containing domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A917_PLAHL) HSP 1 Score: 105 bits (262), Expect = 6.670e-23 Identity = 55/154 (35.71%), Postives = 88/154 (57.14%), Query Frame = 1
Query: 28 PAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVAKDDVMPL 489
P +V G+ LV R+G LR + V ++LT+++VRMF+EAC RL + +M +G D++ + + +H +++ D E V P + FL+ AG+ + QRKSD T LH+A + L+ +++ L+ G D+NAVA DD MPL
Sbjct: 24 PESAANLVANGKFLVNIVRDGNLRALMCAVEQLQEGQVLTFYAVRMFREACAIKRLDILHYMLQNGFDLQQSYMWDTLHSIIETVDSNHSAELVQPLIRFLLN-AGIDVNWQRKSDLFTALHVACCKNLYSISYLLVIYGADVNAVAADDAMPL 176
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Match: A0A3R7KFT7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KFT7_9STRA) HSP 1 Score: 102 bits (254), Expect = 9.480e-23 Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 1
Query: 4 VRRERESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWFSVRMFKEACLHNRLQTICFMFNHGLDVKFHAVLEAVHWLVDGCDEERDGEDVIPALNFLVGEAGMPPDAQRKSDYRTPLHLAVQRGLFEVAHRLIELGVDINAVA 468
+ R RE P +V G+LLV+FA++G LR + ++L ++ VR+F+EAC RL + FM +G D++ V + +H +V G D + P + FL+ +AG+ + QRKSD T LH+A ++ L+ +A+ L+ G D+NA+A
Sbjct: 16 LERLREQDPQSAANLVANGKLLVQFAQDGNLRALQCAAEHLDEGQVLIFYVVRVFREACRAQRLDVLRFMLLNGFDLQQSCVRDVLHSVVGGIDSPESADAAQPLVRFLL-DAGVDINWQRKSDLYTALHVACRKNLYSIAYLLVLYGADVNAIA 169 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1108.1 >prot_C-linearis_contig109.1108.1 ID=prot_C-linearis_contig109.1108.1|Name=mRNA_C-linearis_contig109.1108.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=313bp QVRRERESHPAKTERMVRQGQLLVRFAREGQLREIDKIVSCCPREEMLTWback to top mRNA from alignment at C-linearis_contig109:212036..214635- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1108.1 ID=mRNA_C-linearis_contig109.1108.1|Name=mRNA_C-linearis_contig109.1108.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2600bp|location=Sequence derived from alignment at C-linearis_contig109:212036..214635- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:212036..214635- >mRNA_C-linearis_contig109.1108.1 ID=mRNA_C-linearis_contig109.1108.1|Name=mRNA_C-linearis_contig109.1108.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at C-linearis_contig109:212036..214635- (Chordaria linearis ClinC8C monoicous)back to top |