mRNA_C-linearis_contig109.1104.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1104.1
Unique NamemRNA_C-linearis_contig109.1104.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig109.1104.1 vs. uniprot
Match: A0A6H5L442_9PHAE (Peptidase_S26 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L442_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.110e-28
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:   16 QRPEERALGDVMTPEDVSGGXXXXXX---IGISAEPPGFFKRLFSVPKNVRRTAAAGDVVVPVIGARDGWGGIRQA 234
            +RPEERALGDV+ PED  GG         IG+S EPPGF KR+FS+PKNVRRTAAAGDVVVPVIGARDGWGGIRQA
Sbjct:   90 KRPEERALGDVLIPEDAPGGAGEGGGDDAIGVSVEPPGFLKRVFSIPKNVRRTAAAGDVVVPVIGARDGWGGIRQA 165
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L442_9PHAE5.110e-2875.00Peptidase_S26 domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:193703..193936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D8LKT2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase S24-like
EggNOG OGs2CZ78@1,2S8VM@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size236
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927418.2171664-CDS-C-linearis_contig109:193702..1939361622927418.2171664-CDS-C-linearis_contig109:193702..193936Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 193703..193936 -
1690879690.0709305-CDS-C-linearis_contig109:193702..1939361690879690.0709305-CDS-C-linearis_contig109:193702..193936Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 193703..193936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1104.1prot_C-linearis_contig109.1104.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 193703..193936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1104.1

>prot_C-linearis_contig109.1104.1 ID=prot_C-linearis_contig109.1104.1|Name=mRNA_C-linearis_contig109.1104.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=78bp
MGRCSQRPEERALGDVMTPEDVSGGGGGGGGIGISAEPPGFFKRLFSVPK
NVRRTAAAGDVVVPVIGARDGWGGIRQA
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mRNA from alignment at C-linearis_contig109:193703..193936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1104.1 ID=mRNA_C-linearis_contig109.1104.1|Name=mRNA_C-linearis_contig109.1104.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at C-linearis_contig109:193703..193936- (Chordaria linearis ClinC8C monoicous)
ATGGGGCGCTGTTCACAGAGACCAGAGGAGCGAGCACTAGGGGACGTCAT
GACACCCGAGGATGTCTCAGGCGGCGGAGGCGGCGGGGGCGGCATCGGAA
TATCCGCTGAGCCCCCGGGTTTCTTCAAGAGGCTCTTCTCGGTTCCGAAG
AACGTTCGGCGAACAGCTGCGGCCGGCGATGTTGTTGTGCCCGTGATCGG
CGCCCGGGATGGATGGGGAGGGATACGCCAGGCA
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Coding sequence (CDS) from alignment at C-linearis_contig109:193703..193936-

>mRNA_C-linearis_contig109.1104.1 ID=mRNA_C-linearis_contig109.1104.1|Name=mRNA_C-linearis_contig109.1104.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at C-linearis_contig109:193703..193936- (Chordaria linearis ClinC8C monoicous)
ATGGGGCGCTGTTCACAGAGACCAGAGGAGCGAGCACTAGGGGACGTCAT
GACACCCGAGGATGTCTCAGGCGGCGGAGGCGGCGGGGGCGGCATCGGAA
TATCCGCTGAGCCCCCGGGTTTCTTCAAGAGGCTCTTCTCGGTTCCGAAG
AACGTTCGGCGAACAGCTGCGGCCGGCGATGTTGTTGTGCCCGTGATCGG
CGCCCGGGATGGATGGGGAGGGATACGCCAGGCAATGGGGCGCTGTTCAC
AGAGACCAGAGGAGCGAGCACTAGGGGACGTCATGACACCCGAGGATGTC
TCAGGCGGCGGAGGCGGCGGGGGCGGCATCGGAATATCCGCTGAGCCCCC
GGGTTTCTTCAAGAGGCTCTTCTCGGTTCCGAAGAACGTTCGGCGAACAG
CTGCGGCCGGCGATGTTGTTGTGCCCGTGATCGGCGCCCGGGATGGATGG
GGAGGGATACGCCAGGCA
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