mRNA_C-linearis_contig109.1101.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1101.1
Unique NamemRNA_C-linearis_contig109.1101.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig109.1101.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.330e-45
Identity = 88/159 (55.35%), Postives = 113/159 (71.07%), Query Frame = -2 
Query:    3 QRMTSMLFGQAKYSTWVPTSAYHDTGNAAGSC-GMFPR----GASESP----EGSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKFDGMWMHFTNPDSRQSFVDFDAFALEWNKSVSAMEEGKSPVVPIFRKTAASLKSHWK 452
            QRMTS L+G+AKYS W+PTSAY DTG  +G    +FP     G ++S      G++   ++ +   EAVPL ELT SAA LA MQGVQVP MPV+++ E+ KF  MW+ F +P  RQ+ +DFD+FALEWNK+VS MEEGKS V+PIFRKTA  LK++WK
Sbjct:  349 QRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTAGHLKAYWK 507
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BLAST of mRNA_C-linearis_contig109.1101.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 5.920e-44
Identity = 88/159 (55.35%), Postives = 113/159 (71.07%), Query Frame = -2 
Query:    3 QRMTSMLFGQAKYSTWVPTSAYHDTGNAAGSC-GMFPR----GASESP----EGSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKFDGMWMHFTNPDSRQSFVDFDAFALEWNKSVSAMEEGKSPVVPIFRKTAASLKSHWK 452
            QRMTS L+G+AKYS W+PTSAY DTG  +G    +FP     G ++S      G++   ++ +   EAVPL ELT SAA LA MQGVQVP MPV+++ E+ KF  MW+ F +P  RQ+ +DFD+FALEWNK+VS MEEGKS V+PIFRKTA  LK++WK
Sbjct:  922 QRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTAGHLKAYWK 1080
[Close]
BLAST of mRNA_C-linearis_contig109.1101.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.080e-17
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = -2 
Query:  171 QRMTSMLFGQAKYSTWVPTSAYHDTGNAAGSC-GMFPR----GASESP----EGSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKF 452
            QRMTS L+G+AKYS W+PTSAY DTG  +G    +FP     G ++S      G++   ++ ++V EAVPL ELT SAA LA MQGVQVP MPV+++ E +KF
Sbjct:  524 QRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSEVGGGGTDSVLEILGGAENSSMDPASVEEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAENSKF 626
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JD89_9PHAE2.330e-4555.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE5.920e-4455.353'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE6.080e-1751.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:184953..185405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.5113094-CDS-C-linearis_contig109:184952..1854051622927416.5113094-CDS-C-linearis_contig109:184952..185405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 184953..185405 +
1690879689.1317728-CDS-C-linearis_contig109:184952..1854051690879689.1317728-CDS-C-linearis_contig109:184952..185405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 184953..185405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1101.1prot_C-linearis_contig109.1101.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 184953..185405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1101.1

>prot_C-linearis_contig109.1101.1 ID=prot_C-linearis_contig109.1101.1|Name=mRNA_C-linearis_contig109.1101.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=151bp
FFQCDFKDAAVFLKMGTTGLFPSSMADTLLFHSSAKASKSTKDCRESGFV
KCIHMPSNLVRSKLVLTGMEGTCTPCMLARPAADGVSSSSGTASLTVLLS
SSPKSLPSGDSDAPLGNIPHEPAAFPVSWYALVGTHVEYFAWPKSIDVIL
*
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mRNA from alignment at C-linearis_contig109:184953..185405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1101.1 ID=mRNA_C-linearis_contig109.1101.1|Name=mRNA_C-linearis_contig109.1101.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=453bp|location=Sequence derived from alignment at C-linearis_contig109:184953..185405+ (Chordaria linearis ClinC8C monoicous)
TTTTTCCAGTGCGACTTCAAGGATGCGGCCGTCTTCCTGAAGATGGGGAC
CACCGGGCTCTTCCCCTCTTCCATGGCAGATACGCTCTTGTTCCACTCCA
GCGCAAAGGCGTCGAAGTCGACAAAAGACTGCCGCGAATCCGGATTCGTG
AAATGCATCCACATGCCATCAAACTTGGTGCGTTCAAAGCTAGTGCTGAC
GGGCATGGAAGGCACCTGCACTCCCTGCATGCTTGCGAGGCCAGCCGCCG
ACGGTGTCAGCTCGTCAAGCGGCACGGCCTCGCTGACTGTACTGCTCTCA
AGCTCGCCCAAATCGCTTCCCTCCGGCGATTCTGACGCCCCCCTCGGAAA
CATTCCGCACGAACCCGCTGCGTTCCCCGTGTCATGGTACGCGCTCGTTG
GTACCCACGTTGAGTACTTCGCCTGGCCGAAAAGCATCGATGTCATCCTC
TGA
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Coding sequence (CDS) from alignment at C-linearis_contig109:184953..185405+

>mRNA_C-linearis_contig109.1101.1 ID=mRNA_C-linearis_contig109.1101.1|Name=mRNA_C-linearis_contig109.1101.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at C-linearis_contig109:184953..185405+ (Chordaria linearis ClinC8C monoicous)
TTTTTCCAGTGCGACTTCAAGGATGCGGCCGTCTTCCTGAAGATGGGGAC
CACCGGGCTCTTCCCCTCTTCCATGGCAGATACGCTCTTGTTCCACTCCA
GCGCAAAGGCGTCGAAGTCGACAAAAGACTGCCGCGAATCCGGATTCGTG
AAATGCATCCACATGCCATCAAACTTGGTGCGTTCAAAGCTAGTGCTGAC
GGGCATGGAAGGCACCTGCACTCCCTGCATGCTTGCGAGGCCAGCCGCCG
ACGGTGTCAGCTCGTCAAGCGGCACGGCCTCGCTGACTGTACTGCTCTCA
AGCTCGCCCAAATCGCTTCCCTCCGGCGATTCTGACGCCCCCCTCGGAAA
CATTCCGCACGAACCCGCTGCGTTCCCCGTGTCATGGTACGCGCTCGTTG
GTACCCACGTTGAGTACTTCGCCTGGCCGAAAAGCATCGATGTCATCCTC
TGATTTTTCCAGTGCGACTTCAAGGATGCGGCCGTCTTCCTGAAGATGGG
GACCACCGGGCTCTTCCCCTCTTCCATGGCAGATACGCTCTTGTTCCACT
CCAGCGCAAAGGCGTCGAAGTCGACAAAAGACTGCCGCGAATCCGGATTC
GTGAAATGCATCCACATGCCATCAAACTTGGTGCGTTCAAAGCTAGTGCT
GACGGGCATGGAAGGCACCTGCACTCCCTGCATGCTTGCGAGGCCAGCCG
CCGACGGTGTCAGCTCGTCAAGCGGCACGGCCTCGCTGACTGTACTGCTC
TCAAGCTCGCCCAAATCGCTTCCCTCCGGCGATTCTGACGCCCCCCTCGG
AAACATTCCGCACGAACCCGCTGCGTTCCCCGTGTCATGGTACGCGCTCG
TTGGTACCCACGTTGAGTACTTCGCCTGGCCGAAAAGCATCGATGTCATC
CTCTGA
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