mRNA_C-linearis_contig109.1095.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: D7G2N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N4_ECTSI) HSP 1 Score: 260 bits (664), Expect = 3.080e-79 Identity = 135/175 (77.14%), Postives = 148/175 (84.57%), Query Frame = 2
Query: 368 QMSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQAR--AAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
+ +LTALKVRKLGQQ+ELAKEFN ILTRQGGLNDQARQTCK LEYAIAIATRPGQIEYY+PSEEA RIV NGEL LT+KIARLQR+ID+VEQD+Q A+ Q QP A PCSSLAEWFAAYGEP P A+SGL T FE+SPKIYGGT+HHRAFKTQATVM+KGRITR
Sbjct: 13 RQDELTALKVRKLGQQEELAKEFNFILTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELTVLTNKIARLQRDIDQVEQDIQQADVVASSTAAAAQAQPSARPPCSSLAEWFAAYGEPAPSASSGLMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 187
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A7S2UW48_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW48_9STRA) HSP 1 Score: 144 bits (364), Expect = 3.130e-36 Identity = 74/173 (42.77%), Postives = 109/173 (63.01%), Query Frame = 2
Query: 368 QMSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
++ L K KL QQ+ L+ EFN ILTR+GGLN+ +RQ CK LE A+A+A RPG EYYQ E +RI+ +L LT+KI ++QRE+D+++ +++ + PQ ++L +WFA YG P P +G + FE S K+YGGT HHRAFK+Q+ ++KG + +
Sbjct: 22 KLEQLYEQKASKLAQQKNLSDEFNEILTREGGLNEVSRQACKNLEAAVAVAQRPGYFEYYQAPAEVQRIIAADDLKLLTNKINQIQRELDQIDSEIEQLSKQHYSQRNPPQ------VNNLGQWFAVYGTPKPPP-NGTLSVFEPSDKVYGGTQHHRAFKSQSRSLKKGTVLK 187
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A7S2SKE1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKE1_9STRA) HSP 1 Score: 142 bits (358), Expect = 2.280e-35 Identity = 75/169 (44.38%), Postives = 107/169 (63.31%), Query Frame = 2
Query: 380 LTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
L A KV KL QQ+ + E N ILTR+ GLND + +T + LE A+ ++ +PG EY+Q E + V N +L LT K+ R+Q EID+++ +++ + P PA G SL +W A +G P Q SG +TF+D+PKIYGGT+HHRAFKTQ+ M++GR+TR
Sbjct: 28 LLAAKVAKLDQQKRVTDEMNAILTRENGLNDTSHKTMRNLEVAVVVSKQPGFFEYFQAPSEVQAAVRNNDLVQLTKKVKRIQSEIDQIDAEIEHLRSKQT-----PAAPALGEMRSLKQWLAHHGAP-KQPPSGYFSTFQDAPKIYGGTNHHRAFKTQSMTMKRGRLTR 190
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A812TWU8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWU8_SYMMI) HSP 1 Score: 132 bits (333), Expect = 3.970e-32 Identity = 74/179 (41.34%), Postives = 109/179 (60.89%), Query Frame = 2
Query: 365 PQMSDLTAL---KVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPP-AGGPCSSLAEWFAAYGEP-GPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
PQ LTAL KV+KL +Q+ L+ N +LT++GGLND ++ K L AIA+A +PG EYY+ E + I ++ L++L + ++ REID++ ++ P+PP A +S+++WF YG P TTF+ SPKIYGGT+HHRAFKTQA+ M+KGR+T+
Sbjct: 4 PQAGGLTALYERKVQKLNEQKALSDRMNELLTKKGGLNDNSKNVRKNLSAAIAVAKQPGYFEYYETPSEVREIEDSKILSSLVKSLGKVHREIDQINSEI------AHHHQKGPEPPKAESSLTSMSQWFETYGRPENTHCLEERMTTFQPSPKIYGGTNHHRAFKTQASNMKKGRVTK 176
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A1V9ZEM2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEM2_9STRA) HSP 1 Score: 129 bits (323), Expect = 6.600e-31 Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = 2
Query: 371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
M +L A K L QQE A F+ +L GGLN+ +R+TCK LE AI + +PG YY+ + K +V+NGEL L I +LQ++ID+++ +L AA P SL +WF+ YG P P SG+ T+F PK+YGGT H+ AFK+Q+ M+KGR+T+
Sbjct: 1 MDELRAKKAELLLAQQEKADRFHELLVGPGGLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVVKAVVKNGELRKLQGVIVQLQQKIDQIDAELANHAAKAAAA------PVTNEVQSLKQWFSTYGTPKP-VTSGMLTSFATDPKVYGGTEHYSAFKSQSLTMKKGRLTK 165
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A067CQ53_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ53_SAPPC) HSP 1 Score: 126 bits (316), Expect = 5.250e-30 Identity = 72/172 (41.86%), Postives = 105/172 (61.05%), Query Frame = 2
Query: 371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
M L A K L Q+E A F+ +LT GLN+ +R+TCK LE AI + +PG YY+ + AK IV+NGEL L I +LQ++ID+V+ +++ +AA + PA +L +WF+ YG P P SG+ T+F PK+YGGT H+ AFK+Q+ M+KGR+T+
Sbjct: 1 MEALRAKKEELLFAQKERADRFHELLT---GLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVAKAIVKNGELRKLQSAIVQLQQKIDQVDAEIEVQAA-------KSSAPAPAEVQTLKQWFSTYGTPKP-VTSGVLTSFAADPKVYGGTEHYSAFKSQSLTMKKGRLTK 161
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A7S2FSZ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSZ0_9STRA) HSP 1 Score: 125 bits (315), Expect = 9.870e-30 Identity = 73/168 (43.45%), Postives = 104/168 (61.90%), Query Frame = 2
Query: 392 KVRKLGQQQELAKEFNLILTRQG--GLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGP-CSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
K+ KL +Q+ +A E N +LTR G GLN+ +R+T K LE A+ ++ RPG EYY+P+ E + I +NGE+ L K+ RL EI +++ + Q A +P + GP +SLA+W A YG SG + F D+PKIYGGT HHRAFKTQ+ M++GR+ R
Sbjct: 10 KMAKLKEQKRVADEINELLTRPGEDGLNESSRKTMKNLEVAVVVSKRPGFFEYYKPAPEVEAIQKNGEIQHLVKKLNRLGGEIAQLDAESQNIEAMR-----KPLKMSSGPELTSLAQWNARYGTVEKPVPSGFYSGFNDAPKIYGGTEHHRAFKTQSRTMKRGRLIR 172
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A3R6VT06_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VT06_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.540e-29 Identity = 69/172 (40.12%), Postives = 100/172 (58.14%), Query Frame = 2
Query: 371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
M DL K L Q+E A FN +L+ GGLN+ +R+ CK LE AI + +PG Y++ + K +V+NGEL L I ++Q++ID V+ ++ A A + SL +W + YG P P +SG+ T F +PK+YGGT H+ AFKTQ+T M+KGRIT+
Sbjct: 6 MEDLQKKKEELLHAQREKADRFNALLSGPGGLNETSRKVCKNLEAAITASKKPGYFMYFEQPDVVKAVVKNGELRKLQTAIVQIQQKIDLVDAEITNNARANATTTASGRESE---IQSLKQWLSTYGTPKP-VSSGILTCFSANPKVYGGTEHYSAFKTQSTTMKKGRITK 173
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A6G0X4V5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4V5_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.070e-28 Identity = 69/175 (39.43%), Postives = 103/175 (58.86%), Query Frame = 2
Query: 371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLA---EWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
M +L K L Q++ A +F+ IL+ GGLN+ +R+TCK LE AI+ + +PG Y+ E K I++NGEL L I +L ++I++V+ ++ A P A G S + +WF YG P P SG+ T+F +PK+YGGT H+ AFKTQ+T M+KGR+T+
Sbjct: 1 MEELQKKKEELLHAQRDKADKFHAILSGPGGLNETSRKTCKNLEAAISASKKPGYFSYFDQPEVVKAIIKNGELRKLQTAILQLHQKIEQVDVEIANHTKAGNV------PGAAGTASDIQTFKQWFTTYGTPKP-VTSGVLTSFSANPKVYGGTEHYSAFKTQSTTMKKGRLTK 168
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A485KK74_9STRA (Aste57867_8395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK74_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.420e-28 Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 2
Query: 371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDL--QARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
M DL K L Q+E A +FN +L GGLN+ +R+TCK LE AI+ + +PG YY+ + AK IV+NGEL + + LQ++I++V+ ++ Q + A + + +L +W A YG P P +SG+ T+F + K+YGGT H+ AFK+Q+T M+KGR+T+
Sbjct: 12 MEDLQKKKEELLHAQREKADKFNEVLNAPGGLNEVSRKTCKNLEAAISASKKPGYFMYYEQPDVAKAIVKNGELKKIHAAVMLLQQKIEQVDVEIENQKKTLASGVGGGESE------IQNLKQWLATYGAPKP-VSSGMLTSFNSNAKVYGGTEHYSAFKSQSTTMKKGRLTK 178 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1095.1 >prot_C-linearis_contig109.1095.1 ID=prot_C-linearis_contig109.1095.1|Name=mRNA_C-linearis_contig109.1095.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp MGINKVKEISTTWPQMSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQback to top mRNA from alignment at C-linearis_contig109:144678..148169+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1095.1 ID=mRNA_C-linearis_contig109.1095.1|Name=mRNA_C-linearis_contig109.1095.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3492bp|location=Sequence derived from alignment at C-linearis_contig109:144678..148169+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:144678..148169+ >mRNA_C-linearis_contig109.1095.1 ID=mRNA_C-linearis_contig109.1095.1|Name=mRNA_C-linearis_contig109.1095.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig109:144678..148169+ (Chordaria linearis ClinC8C monoicous)back to top |