mRNA_C-linearis_contig109.1095.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1095.1
Unique NamemRNA_C-linearis_contig109.1095.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: D7G2N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N4_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 3.080e-79
Identity = 135/175 (77.14%), Postives = 148/175 (84.57%), Query Frame = 2
Query:  368 QMSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQAR--AAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            +  +LTALKVRKLGQQ+ELAKEFN ILTRQGGLNDQARQTCK LEYAIAIATRPGQIEYY+PSEEA RIV NGEL  LT+KIARLQR+ID+VEQD+Q     A+      Q QP A  PCSSLAEWFAAYGEP P A+SGL T FE+SPKIYGGT+HHRAFKTQATVM+KGRITR
Sbjct:   13 RQDELTALKVRKLGQQEELAKEFNFILTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELTVLTNKIARLQRDIDQVEQDIQQADVVASSTAAAAQAQPSARPPCSSLAEWFAAYGEPAPSASSGLMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 187          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A7S2UW48_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW48_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.130e-36
Identity = 74/173 (42.77%), Postives = 109/173 (63.01%), Query Frame = 2
Query:  368 QMSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            ++  L   K  KL QQ+ L+ EFN ILTR+GGLN+ +RQ CK LE A+A+A RPG  EYYQ   E +RI+   +L  LT+KI ++QRE+D+++ +++  +         PQ       ++L +WFA YG P P   +G  + FE S K+YGGT HHRAFK+Q+  ++KG + +
Sbjct:   22 KLEQLYEQKASKLAQQKNLSDEFNEILTREGGLNEVSRQACKNLEAAVAVAQRPGYFEYYQAPAEVQRIIAADDLKLLTNKINQIQRELDQIDSEIEQLSKQHYSQRNPPQ------VNNLGQWFAVYGTPKPPP-NGTLSVFEPSDKVYGGTQHHRAFKSQSRSLKKGTVLK 187          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A7S2SKE1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKE1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.280e-35
Identity = 75/169 (44.38%), Postives = 107/169 (63.31%), Query Frame = 2
Query:  380 LTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            L A KV KL QQ+ +  E N ILTR+ GLND + +T + LE A+ ++ +PG  EY+Q   E +  V N +L  LT K+ R+Q EID+++ +++   +        P  PA G   SL +W A +G P  Q  SG  +TF+D+PKIYGGT+HHRAFKTQ+  M++GR+TR
Sbjct:   28 LLAAKVAKLDQQKRVTDEMNAILTRENGLNDTSHKTMRNLEVAVVVSKQPGFFEYFQAPSEVQAAVRNNDLVQLTKKVKRIQSEIDQIDAEIEHLRSKQT-----PAAPALGEMRSLKQWLAHHGAP-KQPPSGYFSTFQDAPKIYGGTNHHRAFKTQSMTMKRGRLTR 190          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A812TWU8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWU8_SYMMI)

HSP 1 Score: 132 bits (333), Expect = 3.970e-32
Identity = 74/179 (41.34%), Postives = 109/179 (60.89%), Query Frame = 2
Query:  365 PQMSDLTAL---KVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPP-AGGPCSSLAEWFAAYGEP-GPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            PQ   LTAL   KV+KL +Q+ L+   N +LT++GGLND ++   K L  AIA+A +PG  EYY+   E + I ++  L++L   + ++ REID++  ++             P+PP A    +S+++WF  YG P          TTF+ SPKIYGGT+HHRAFKTQA+ M+KGR+T+
Sbjct:    4 PQAGGLTALYERKVQKLNEQKALSDRMNELLTKKGGLNDNSKNVRKNLSAAIAVAKQPGYFEYYETPSEVREIEDSKILSSLVKSLGKVHREIDQINSEI------AHHHQKGPEPPKAESSLTSMSQWFETYGRPENTHCLEERMTTFQPSPKIYGGTNHHRAFKTQASNMKKGRVTK 176          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A1V9ZEM2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEM2_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.600e-31
Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = 2
Query:  371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            M +L A K   L  QQE A  F+ +L   GGLN+ +R+TCK LE AI  + +PG   YY+  +  K +V+NGEL  L   I +LQ++ID+++ +L   AA           P      SL +WF+ YG P P   SG+ T+F   PK+YGGT H+ AFK+Q+  M+KGR+T+
Sbjct:    1 MDELRAKKAELLLAQQEKADRFHELLVGPGGLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVVKAVVKNGELRKLQGVIVQLQQKIDQIDAELANHAAKAAAA------PVTNEVQSLKQWFSTYGTPKP-VTSGMLTSFATDPKVYGGTEHYSAFKSQSLTMKKGRLTK 165          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A067CQ53_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ53_SAPPC)

HSP 1 Score: 126 bits (316), Expect = 5.250e-30
Identity = 72/172 (41.86%), Postives = 105/172 (61.05%), Query Frame = 2
Query:  371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            M  L A K   L  Q+E A  F+ +LT   GLN+ +R+TCK LE AI  + +PG   YY+  + AK IV+NGEL  L   I +LQ++ID+V+ +++ +AA       +   PA     +L +WF+ YG P P   SG+ T+F   PK+YGGT H+ AFK+Q+  M+KGR+T+
Sbjct:    1 MEALRAKKEELLFAQKERADRFHELLT---GLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVAKAIVKNGELRKLQSAIVQLQQKIDQVDAEIEVQAA-------KSSAPAPAEVQTLKQWFSTYGTPKP-VTSGVLTSFAADPKVYGGTEHYSAFKSQSLTMKKGRLTK 161          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A7S2FSZ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSZ0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 9.870e-30
Identity = 73/168 (43.45%), Postives = 104/168 (61.90%), Query Frame = 2
Query:  392 KVRKLGQQQELAKEFNLILTRQG--GLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGP-CSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            K+ KL +Q+ +A E N +LTR G  GLN+ +R+T K LE A+ ++ RPG  EYY+P+ E + I +NGE+  L  K+ RL  EI +++ + Q   A       +P   + GP  +SLA+W A YG       SG  + F D+PKIYGGT HHRAFKTQ+  M++GR+ R
Sbjct:   10 KMAKLKEQKRVADEINELLTRPGEDGLNESSRKTMKNLEVAVVVSKRPGFFEYYKPAPEVEAIQKNGEIQHLVKKLNRLGGEIAQLDAESQNIEAMR-----KPLKMSSGPELTSLAQWNARYGTVEKPVPSGFYSGFNDAPKIYGGTEHHRAFKTQSRTMKRGRLIR 172          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A3R6VT06_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VT06_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.540e-29
Identity = 69/172 (40.12%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            M DL   K   L  Q+E A  FN +L+  GGLN+ +R+ CK LE AI  + +PG   Y++  +  K +V+NGEL  L   I ++Q++ID V+ ++   A A        +        SL +W + YG P P  +SG+ T F  +PK+YGGT H+ AFKTQ+T M+KGRIT+
Sbjct:    6 MEDLQKKKEELLHAQREKADRFNALLSGPGGLNETSRKVCKNLEAAITASKKPGYFMYFEQPDVVKAVVKNGELRKLQTAIVQIQQKIDLVDAEITNNARANATTTASGRESE---IQSLKQWLSTYGTPKP-VSSGILTCFSANPKVYGGTEHYSAFKTQSTTMKKGRITK 173          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A6G0X4V5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4V5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.070e-28
Identity = 69/175 (39.43%), Postives = 103/175 (58.86%), Query Frame = 2
Query:  371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDLQARAAAXXXXXXQPQPPAGGPCSSLA---EWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            M +L   K   L  Q++ A +F+ IL+  GGLN+ +R+TCK LE AI+ + +PG   Y+   E  K I++NGEL  L   I +L ++I++V+ ++     A         P A G  S +    +WF  YG P P   SG+ T+F  +PK+YGGT H+ AFKTQ+T M+KGR+T+
Sbjct:    1 MEELQKKKEELLHAQRDKADKFHAILSGPGGLNETSRKTCKNLEAAISASKKPGYFSYFDQPEVVKAIIKNGELRKLQTAILQLHQKIEQVDVEIANHTKAGNV------PGAAGTASDIQTFKQWFTTYGTPKP-VTSGVLTSFSANPKVYGGTEHYSAFKTQSTTMKKGRLTK 168          
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Match: A0A485KK74_9STRA (Aste57867_8395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK74_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.420e-28
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 2
Query:  371 MSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQREIDEVEQDL--QARAAAXXXXXXQPQPPAGGPCSSLAEWFAAYGEPGPQAASGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR 886
            M DL   K   L  Q+E A +FN +L   GGLN+ +R+TCK LE AI+ + +PG   YY+  + AK IV+NGEL  +   +  LQ++I++V+ ++  Q +  A      + +        +L +W A YG P P  +SG+ T+F  + K+YGGT H+ AFK+Q+T M+KGR+T+
Sbjct:   12 MEDLQKKKEELLHAQREKADKFNEVLNAPGGLNEVSRKTCKNLEAAISASKKPGYFMYYEQPDVAKAIVKNGELKKIHAAVMLLQQKIEQVDVEIENQKKTLASGVGGGESE------IQNLKQWLATYGAPKP-VSSGMLTSFNSNAKVYGGTEHYSAFKSQSTTMKKGRLTK 178          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2N4_ECTSI3.080e-7977.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UW48_9STRA3.130e-3642.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SKE1_9STRA2.280e-3544.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812TWU8_SYMMI3.970e-3241.34Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A1V9ZEM2_9STRA6.600e-3141.28Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CQ53_SAPPC5.250e-3041.86Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2FSZ0_9STRA9.870e-3043.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3R6VT06_9STRA3.540e-2940.12Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A6G0X4V5_9STRA1.070e-2839.43Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KK74_9STRA1.420e-2839.08Aste57867_8395 protein n=1 Tax=Aphanomyces stellat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:144678..148169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.9
Seed ortholog evalue2.3e-67
Seed eggNOG ortholog2880.D7G2N4
Hectar predicted targeting categoryother localisation
EggNOG OGs2C2XI@1,2S2SM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002870.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2134
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1095.1prot_C-linearis_contig109.1095.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 145003..146924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927417.5436387-UTR-C-linearis_contig109:144677..1450021622927417.5436387-UTR-C-linearis_contig109:144677..145002Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 144678..145002 +
1690879689.6178832-UTR-C-linearis_contig109:144677..1450021690879689.6178832-UTR-C-linearis_contig109:144677..145002Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 144678..145002 +
1622927417.598625-UTR-C-linearis_contig109:146924..1481691622927417.598625-UTR-C-linearis_contig109:146924..148169Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 146925..148169 +
1690879689.6811604-UTR-C-linearis_contig109:146924..1481691690879689.6811604-UTR-C-linearis_contig109:146924..148169Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 146925..148169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927417.555226-CDS-C-linearis_contig109:145002..1451341622927417.555226-CDS-C-linearis_contig109:145002..145134Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 145003..145134 +
1690879689.6302323-CDS-C-linearis_contig109:145002..1451341690879689.6302323-CDS-C-linearis_contig109:145002..145134Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 145003..145134 +
1622927417.566418-CDS-C-linearis_contig109:145482..1456651622927417.566418-CDS-C-linearis_contig109:145482..145665Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 145483..145665 +
1690879689.6407845-CDS-C-linearis_contig109:145482..1456651690879689.6407845-CDS-C-linearis_contig109:145482..145665Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 145483..145665 +
1622927417.5772715-CDS-C-linearis_contig109:146055..1462541622927417.5772715-CDS-C-linearis_contig109:146055..146254Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 146056..146254 +
1690879689.6586516-CDS-C-linearis_contig109:146055..1462541690879689.6586516-CDS-C-linearis_contig109:146055..146254Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 146056..146254 +
1622927417.5879126-CDS-C-linearis_contig109:146874..1469241622927417.5879126-CDS-C-linearis_contig109:146874..146924Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 146875..146924 +
1690879689.6695206-CDS-C-linearis_contig109:146874..1469241690879689.6695206-CDS-C-linearis_contig109:146874..146924Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 146875..146924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1095.1

>prot_C-linearis_contig109.1095.1 ID=prot_C-linearis_contig109.1095.1|Name=mRNA_C-linearis_contig109.1095.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp
MGINKVKEISTTWPQMSDLTALKVRKLGQQQELAKEFNLILTRQGGLNDQ
ARQTCKYLEYAIAIATRPGQIEYYQPSEEAKRIVENGELAALTHKIARLQ
REIDEVEQDLQARAAASSAAAAQPQPPAGGPCSSLAEWFAAYGEPGPQAA
SGLTTTFEDSPKIYGGTSHHRAFKTQATVMRKGRITR*
back to top

mRNA from alignment at C-linearis_contig109:144678..148169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1095.1 ID=mRNA_C-linearis_contig109.1095.1|Name=mRNA_C-linearis_contig109.1095.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3492bp|location=Sequence derived from alignment at C-linearis_contig109:144678..148169+ (Chordaria linearis ClinC8C monoicous)
TACGTGTTTCGCCCACTGCAAAGCTACATACGGCTGTGTACCACCAACAG AGCTTTTACGGTAAACAGCCCCGTGGCTCGTTTGTACGTTTGTACGACAT GTCCCGGCTGTGACTCCCAAGCTCCTGTACCACGAGCGAGCTTGTTGTAT GTTGCTATCGGTGGAAGGGGGAAGTCTGGTTCATGCAGGCGGTCTAATTC GTGAAGCACCATGGTGACTGAACGTTGTCGATGGTCGATTCCTGGACAAT AATAGCCTTCAGACGACTACACCTTCTTTGCGCTGGCATCCGCTTGCATG TCACGTGCTGTACAATTCGCTGCATATGGGGATAAATAAGGTTAAAGAAA TCTCCACCACCTGGCCTCAAATGTCGGACCTGACGGCGCTCAAGGTCCGA AAACTTGGGCAGCAGCAGGAGCTCGCAAAGGAGTTCAACCTCATCCTCAC ACGTCAGGTACAGCAGCAGCAGTAGTAGTAGTAGGCGACGGCTGTTGTGT TGTGTCCGTCGGTCGGCGGTCGTTCGTCGCTTTGTCATTTGATTTACTCT GAGGTGCTGGAGGTTATTGTTGGTGTTGTTTGTGCTGTTGGTGTCTCGAT AAACTCTTTCAAAATATTAATATTTGAACCTTTGGGCGCAGTCGAATCCC TGCCTCGTCGTTTCGATAATACGCTGTAGCCTTGTCGTGACCGCAGGTAA CTAACCATGCACGGCAGCGACGTGTTGCCTGTTGACGCTGCCCATGGTGT ACTCGGAAATGCCACGCGCCGGTTGCTACCTGTGTACCAATTGTGCGTCG ACCAGGGAGGGTTGAACGACCAGGCGCGTCAGACCTGCAAGTACCTCGAG TATGCCATCGCCATCGCCACTCGGCCAGGACAGATTGAGTACTACCAGCC ATCGGAGGAAGCAAAGCGCATCGTAGAGAACGGGGAGCTCGCTGCTCTCA CTCACAAGATCGCCCGCTTGCAGAGAGAAATCGACGAGGTCGGCCTGCCG GTACAGCAGTAGCACTGGACCATAAAAGAGCAACAACCAACCAACGAGTG CAAATAAATGCAGAAGCAGCGCAACCCTGCCGTCTCACCACGCCGTTTTT TTGTGTTTTTTGCTGCTCGGATTTTAACACCTTCACCCTTTCGTCCTTCG TACCTCGACCATCACCATAAAAATGTGTCCAAACGTGCCCTTTTCGTCTC CAAGAAGACCACGGATTGAGGATTATTTATGCTAGCAAAAAGTAAGTGCA AATACGCGCGTGTGTGTTGTTTTCCTTGGGGGCAAGAAGAGCATCGGTCC ATTCGTTTCGCGCGCACAACCAACTTTCGTTTGCCACTTATGTATTAGAC TACTGTATAAATAATGTATCCGTGCCAGGTTGAGCAAGATCTCCAGGCAC GCGCGGCTGCTTCTTCCGCTGCTGCCGCTCAGCCGCAACCCCCGGCGGGG GGACCCTGTTCGAGTCTTGCCGAGTGGTTTGCGGCCTATGGGGAACCCGG TCCGCAGGCAGCGAGCGGGCTAACGACAACCTTCGAGGACAGCCCCAAGA TTTACGGGGGAACTAGTCATCACAGAGGTGTGCTCAGTGAAGATATTCGT ACTAGAAAACGTGAGAGAGTTCCGTGGCAAATACATGGAACACCATGTTC AGGAAAAATGACAAACAAACTCGGCTACATACATACGTGTGTTACGTAAT CATAATTGGATCAATTCGCAATCATCAATATACGCGCCTGACTTTTCTCT ATCGCGGCAATCCCGTTCTTTGAGCCGTACCCGAGGGGTTCGTTTTCAAG CCCTCTTAAATTAATGTATTTGCGTGCCGTGGGCCACCTCTTGCGCAGCA CTAGTCTTAACCAGAGTCTGAACCTGGGACATATTGCGCGTATCCTACAA TGTAGGGAAAAACAACAAAGGACCCCTTGCAATCACTACTGCTGTAGATA GACTCACCTATAGATAAACTCACCTTTTTCGGGGGTGCCTCTTTCCCGTG AAGGGTCAGTACATTTCAATGCCCCATCGCAACCAAACCAAATCGCGCGC GCTTCCAAAACAAAACGCAACCTCCTGCATGTAGAAGAGAGCGACTTCGA CCACGGCGTCGGTGGGTGGTACTCGCTGACCAAGGCTAGACTCCGTTGTT CTCCTCTGCGGCCCCCTTCTCCGCCCCTGCTTGATTGTTACTCCTAGCCT TCAAGACCCAGGCGACGGTGATGAGGAAAGGCCGAATCACTCGATAGGAC GGAGGGGTCGGGTGGGTGGATGCATGCATACATGCCCACCTTCCATTCAT CCGAGTTGTTCGACGTTTTGTGTGTTAATTTAGACTATTTTCGTGAGCTT CGTCGACCCGTGAGGAGCGTGCAGTGCAAGGCTTGTTTAATTTGATGCTC GGTTTATGCCGTCAGAGGCAGAGGACACGTTGGTAGCATGTTGTGTCCTA CTTTCGTGTGCTCGGCCCCGGTTCACCGCGAGTATGTGTTGTCCGGCTGA TAGTTTGTGGTCGCGGGCAGAGAGCCTTGCTGTAGAGCCGGCCACACCAA CACGATTCAAAGGAGCACCACTGCTGTAGAAAGATCGCACGGCAATGGCC CCTGAGATAACGTGACCCCTCCCAGGCCTGATTTGGGTGGACATGTGTAC CGAGGGGCTGGTGGTGAGGGCGCTTTTCGTCCATCGGCAGTGTTGCCGAT AGATCCAACCAACCCTGGCAATACAGGGAGAGCTTCTTGAGATCCCGGCG GCAGAGGCAAACCACGTCATCATCGTTCGCTGATCCTACTCATCAATATT CCACGCCCAAGAACACACCGAGAGGGCATTCAGCAGTACGTTGTTGCGCA GCGCGCGTACACTGCGTGCGAACAACGCCAACCAAAAAAAAACCGGAGCG TTTGGATTTGAAACAAAGGCTGACTCCCTCCACTCCCAGCCCCAACAATG CACAGCTAAATGTCAGGTATAAAACTCGCCACGGCAGTTTACGTCAAGTG ACCACCGTCGCCACAACGATCATCTTGGGCTGTGCCGGGAAACCTTGCGG CTTCGAGACTTCGAGGAGGCCAAACCGGCCACGACAGCAGTCCGCATCTT CCACCACCAACCCCAAGCGCAGGCGAACACAAAACAAAATACAGGAAAAG GCCGACAACCCAAGTACCAAGTACCAAGTTATCACCAAACAAGAGGGTGT CCTCGCGCCCAAGGGTACACCTACGATAACACCACCATCCTGTTCGACAG ACACACACCGCTACAAAAAAAAGTGTCCAGGCTCCATCCAAACCACACAC AATTTCTACAAGGCTCAAGGCTTTCCAGAAAAAACTCACCTGCGGGCCGC ACCGCAGGCTACAAAACACGCCTACGTCTCTGAGCCCACCAACGAGTAAA AGCAGATGTAGCACGTGCGCTGGGCCGCCCCATTGAGCGCCTTCGCCTCC GACACCGCGGCGACAACGCTGTCGTCGTGCCGTTTCCACCCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig109:144678..148169+

>mRNA_C-linearis_contig109.1095.1 ID=mRNA_C-linearis_contig109.1095.1|Name=mRNA_C-linearis_contig109.1095.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig109:144678..148169+ (Chordaria linearis ClinC8C monoicous)
ATGGGGATAAATAAGGTTAAAGAAATCTCCACCACCTGGCCTCAAATGTC
GGACCTGACGGCGCTCAAGGTCCGAAAACTTGGGCAGCAGCAGGAGCTCG
CAAAGGAGTTCAACCTCATCCTCACACGTCAGATGGGGATAAATAAGGTT
AAAGAAATCTCCACCACCTGGCCTCAAATGTCGGACCTGACGGCGCTCAA
GGTCCGAAAACTTGGGCAGCAGCAGGAGCTCGCAAAGGAGTTCAACCTCA
TCCTCACACGTCAGGGAGGGTTGAACGACCAGGCGCGTCAGACCTGCAAG
TACCTCGAGTATGCCATCGCCATCGCCACTCGGCCAGGACAGATTGAGTA
CTACCAGCCATCGGAGGAAGCAAAGCGCATCGTAGAGAACGGGGAGCTCG
CTGCTCTCACTCACAAGATCGCCCGCTTGCAGAGAGAAATCGACGAGGGA
GGGTTGAACGACCAGGCGCGTCAGACCTGCAAGTACCTCGAGTATGCCAT
CGCCATCGCCACTCGGCCAGGACAGATTGAGTACTACCAGCCATCGGAGG
AAGCAAAGCGCATCGTAGAGAACGGGGAGCTCGCTGCTCTCACTCACAAG
ATCGCCCGCTTGCAGAGAGAAATCGACGAGGTTGAGCAAGATCTCCAGGC
ACGCGCGGCTGCTTCTTCCGCTGCTGCCGCTCAGCCGCAACCCCCGGCGG
GGGGACCCTGTTCGAGTCTTGCCGAGTGGTTTGCGGCCTATGGGGAACCC
GGTCCGCAGGCAGCGAGCGGGCTAACGACAACCTTCGAGGACAGCCCCAA
GATTTACGGGGGAACTAGTCATCACAGAGGTTGAGCAAGATCTCCAGGCA
CGCGCGGCTGCTTCTTCCGCTGCTGCCGCTCAGCCGCAACCCCCGGCGGG
GGGACCCTGTTCGAGTCTTGCCGAGTGGTTTGCGGCCTATGGGGAACCCG
GTCCGCAGGCAGCGAGCGGGCTAACGACAACCTTCGAGGACAGCCCCAAG
ATTTACGGGGGAACTAGTCATCACAGAGCCTTCAAGACCCAGGCGACGGT
GATGAGGAAAGGCCGAATCACTCGATAGCCTTCAAGACCCAGGCGACGGT
GATGAGGAAAGGCCGAATCACTCGATAG
back to top