mRNA_C-linearis_contig109.1089.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE) HSP 1 Score: 262 bits (669), Expect = 4.960e-81 Identity = 126/169 (74.56%), Postives = 138/169 (81.66%), Query Frame = 2
Query: 158 GRFSWASLELRSKLFIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLERKGAWYRFSDDGVTKGDLSYFRMAGYLDDTNTWYLSDPKDRPEELLGLPTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFPHVPEADV 664
G F LRSKLFIRPCY+ LS+ ILEGV DGTMDKIVVTGTPGIGKSEFGFYLM+LLR QG TVVLERK +W+RFSD+GVT G FR AGYL +TWYLSDP+DRP+ELLGLPTVVL+SPR RVNEFMKQ GS YM PWCLDELF C++AVFPHVPE DV
Sbjct: 62 GTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQGNTVVLERKDSWFRFSDEGVTVGYFYSFRRAGYLYGNSTWYLSDPEDRPKELLGLPTVVLLSPRKSRVNEFMKQPGSRRFYMPPWCLDELFRCRQAVFPHVPETDV 230
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A6H5KCR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR9_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.260e-37 Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 2
Query: 158 GRFSWASLELRSKLFIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLERKGAWYRFSDDGVTKGDL 421
G F LRSKLFIRPCY+ LS+ ILEGV DGTMDKIVVTGTPGIGKSEFGFYLM+LLR QG TVVLERKG W+RFSD GVT GD
Sbjct: 43 GTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQGNTVVLERKGCWFRFSDGGVTVGDF 130
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A835Z6Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q5_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.180e-23 Identity = 63/168 (37.50%), Postives = 90/168 (53.57%), Query Frame = 2
Query: 191 SKLFIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLERKGAWYRFSDDGVTKGD-LSYFRMAGYLDDTNTWYLSDPKDRPEELLGL--PTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFPHVPEADVGTLW*GW 685
++++IR CY L I V GT ++V+TGTPGIGKS + Y + LR G TVV + +YRFS + V D + F+ AG L + W+L DP E G T+V VSP T R F+K+ + YM W +E+ C++ +F HVP++ V L W
Sbjct: 116 NRIYIRSCYRELMDTIKAMVTSGTR-RVVITGTPGIGKSCYALYWLWHLRRAGNTVVYQIGADFYRFSGELVQHADTIGAFKNAGGLWHPDVWFLCDPARDHEPYGGCLGVTLVFVSPSTERYKAFLKEPRATTRYMPVWSQEEVQRCRQLLFDHVPQSRVQDLLEQW 282
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A836CEN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN6_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.610e-21 Identity = 60/182 (32.97%), Postives = 89/182 (48.90%), Query Frame = 2
Query: 158 GRFSWASLELRSKLFIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLERKGAWYRFSDDGVTKGDLSYFRMAGYLDDTNTWYLSDPKDRPEELLGLPTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFP------HVPEADVGTLW*GW 685
G + + + S ++IR CY L ++I + V + ++V+TGTPGIGK+ + FY + LR G+TVV + WYRF +G F AGYLDD + G T+V V+PR R +EF+K + +M W +EL C +F VP+A V L+ W
Sbjct: 21 GTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDP----AAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRW 198
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A4P9YF92_ROZAC (Uncharacterized protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YF92_ROZAC) HSP 1 Score: 95.1 bits (235), Expect = 9.090e-19 Identity = 58/164 (35.37%), Postives = 84/164 (51.22%), Query Frame = 2
Query: 200 FIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLER--KGAWYRFSDDGVTKGDLSYFRMAGYLDDTNTWYLSDPKDRPEELLGLPTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFPHVPEADVGTLW*GW 685
F+RPCY L + LE + D T +V+ G PGIGK+ FG++L+H TVV ER Y FS ++ G S F YL D NT Y+ D +P +L T++L SPR +F + + YMS W +E+ C+ ++ +PE V L+ W
Sbjct: 6 FVRPCYTLLLAKCLEIIADPTTPHLVILGNPGIGKTYFGYFLLHYFAKHNHTVVYERGRSNERYLFSSGVISSGSQSDF--VPYLHDPNTIYIVDAF-KPVDLAS-KTILLSSPRRELWYKFSDDHCT-IRYMSVWSKEEIQVCRALLYQDLPERTVNDLYNKW 164
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A075AZF4_ROZAC (Uncharacterized protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AZF4_ROZAC) HSP 1 Score: 95.1 bits (235), Expect = 1.030e-18 Identity = 58/164 (35.37%), Postives = 84/164 (51.22%), Query Frame = 2
Query: 200 FIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLER--KGAWYRFSDDGVTKGDLSYFRMAGYLDDTNTWYLSDPKDRPEELLGLPTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFPHVPEADVGTLW*GW 685
F+RPCY L + LE + D T +V+ G PGIGK+ FG++L+H TVV ER Y FS ++ G S F YL D NT Y+ D +P +L T++L SPR +F + + YMS W +E+ C+ ++ +PE V L+ W
Sbjct: 184 FVRPCYTLLLAKCLEIIADPTTPHLVILGNPGIGKTYFGYFLLHYFAKHNHTVVYERGRSNERYLFSSGVISSGSQSDF--VPYLHDPNTIYIVDAF-KPVDLAS-KTILLSSPRRELWYKFSDDHCT-IRYMSVWSKEEIQVCRALLYQDLPERTVNDLYNKW 342
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: E3KCW4_PUCGT (Uncharacterized protein n=1 Tax=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) TaxID=418459 RepID=E3KCW4_PUCGT) HSP 1 Score: 93.2 bits (230), Expect = 7.650e-18 Identity = 57/174 (32.76%), Postives = 90/174 (51.72%), Query Frame = 2
Query: 182 ELRSKLFIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLE----RKG--AWYRFSDDGVTKGDLSYFRMAGYLDDTNTWYLSDPKDRPEELLGLPTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFPH---VPEADVGTLW 676
+L S+ +RP Y K + + ++D K+VVTGTPGIGK+ F Y M + C KTVV E RKG A + + GV + ++ + L + T Y+ D +P T+V+ SP +++K +G+ LLYM PW +EL C+ ++P +P A + L+
Sbjct: 233 KLGSRFLVRPVY----KELYDYIVDFNYSKVVVTGTPGIGKTIFSAYYMWIAACNQKTVVWEPCPSRKGGRATFLMTSGGVQRVNIDSHEVGEILVNDETVYIVD--GQPPTKCEAQTLVVTSPLGENYVQYLKTSGTKLLYMPPWTYEELRNCKTIIYPDDQILPTALMDRLF 400
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A1V9ZDM4_9STRA (Crinkler (CRN) family protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDM4_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.070e-16 Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 2
Query: 191 SKLFIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLERKGAW--YRFSDDGVTKGDLSYFRMAGYLDDTNTWYLSDPKDRPEELLGLPTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFPHVPEADVGTLW*GW 685
+ +FIRPCY L K + +I+G +V+ G+PGIGK+ FGF L+H L TVV E + Y F+ V KG L+ F + +D+ +T+YL D +RP++ G ++L SPR + EF K + YM W DE+ +C + H+ + V + W
Sbjct: 116 TNVFIRPCYTKLLKLTWD-LINGENSHLVILGSPGIGKTFFGFVLLHQLAHLNLTVVYEHGPSKNRYLFTQTNVFKGSLNDFDLI--VDNESTFYLIDG-NRPKQTTG-KAILLTSPRKKIYGEFKKFKCN-KRYMPVWSNDEILKCHALAYNHLDKVAVERCFVRW 276
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A397SYL8_9GLOM (Uncharacterized protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SYL8_9GLOM) HSP 1 Score: 89.7 bits (221), Expect = 1.100e-16 Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 2
Query: 191 SKLFIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLER-KGAWYRFSDDGV-TKGDLSYFRMAGYLDDTNTWYLSDPKDRPEELLGLPTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFPHVPEADVGTLW*GW 685
S LFIR CY+ L K I E + + + +TG PGIGK+ FGFYL+H L Q KTV+ + K + FS++GV + + + + YL + WY+ D ++ P E + T+++ SP+ N+F K G + YM W E+ C+ +F ++ + V L+ W
Sbjct: 149 STLFIRECYKDLYKMISE---NNNVRRWRITGNPGIGKTFFGFYLLHFLAKQNKTVIYHKLKKSPMLFSENGVFSYPEDNIHALKSYLANEEVWYIVDGRE-PMEYVA-KTILVCSPQKSHYNQFDK-LGVTIRYMPVWSWAEIDLCRDMLFRNLTQGYVRELYNKW 309
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Match: A0A075ARB9_ROZAC (SCP2 domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075ARB9_ROZAC) HSP 1 Score: 87.4 bits (215), Expect = 8.100e-16 Identity = 55/173 (31.79%), Postives = 87/173 (50.29%), Query Frame = 2
Query: 173 ASLELRSKLFIRPCYEYLSKRILEGVIDGTMDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLER--KGAWYRFSDDGVTKGDLSYFRMAGYLDDTNTWYLSDPKDRPEELLGLPTVVLVSPRTRRVNEFMKQAGSCLLYMSPWCLDELFECQRAVFPHVPEADVGTLW*GW 685
+L + F+RPCY L ++ LE + + T +V+ G PGIGK+ FG++L+H TVV ER Y FS ++ G S F YL + NT Y+ D +P ++ T++L SPR +F + + YMS W +E+ C+ ++ + DV L+ W
Sbjct: 224 GNLSIGKSWFVRPCYPLLLEKCLEIIAEPTTPHLVILGNPGIGKTYFGYFLLHYFAKNNHTVVYERGKSNERYLFSSGVISWGSQSDF--VPYLREPNTIYIVDAF-KPVDVAA-KTILLSSPRQDVWYKFSDDHCT-IRYMSVWSKEEIQACRALLYASLSADDVDKLYSKW 391 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1089.1 >prot_C-linearis_contig109.1089.1 ID=prot_C-linearis_contig109.1089.1|Name=mRNA_C-linearis_contig109.1089.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=139bp MDKIVVTGTPGIGKSEFGFYLMHLLRCQGKTVVLERKGAWYRFSDDGVTKback to top mRNA from alignment at C-linearis_contig109:13692..16589+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1089.1 ID=mRNA_C-linearis_contig109.1089.1|Name=mRNA_C-linearis_contig109.1089.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2898bp|location=Sequence derived from alignment at C-linearis_contig109:13692..16589+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:13692..16589+ >mRNA_C-linearis_contig109.1089.1 ID=mRNA_C-linearis_contig109.1089.1|Name=mRNA_C-linearis_contig109.1089.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at C-linearis_contig109:13692..16589+ (Chordaria linearis ClinC8C monoicous)back to top |