mRNA_C-linearis_contig108.1083.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig108.1083.1
Unique NamemRNA_C-linearis_contig108.1083.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.430e-21
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   40 EGKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRVT 201
            EG +R  DAF +ALSQACEGG+KRWYT T ELQL SL++C+ACRS PTLHVRVT
Sbjct:    4 EGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVT 57
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BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 5.680e-19
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   46 KSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRV 198
            +S+C+DAF+VAL+Q C+G +KRWY  TLELQL SLE C ACR VPTLHVRV
Sbjct:   38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRV 88
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BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.530e-18
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   25 MSTAAEGKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRVTD 204
            M+   E ++RC+DAF++ALSQACEGG+KRWY  TLELQL SL++C+ACR+   LHV V D
Sbjct:    1 MARVIEWRTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDD 60
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BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.170e-18
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   40 EGKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRV 198
            EG+ +C+DAFIVAL+Q C+G + RWY  TLELQL SL+ C ACR  PTLHVRV
Sbjct:    4 EGRRKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRV 56
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BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.960e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   40 EGKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRV 198
            +G S+C+DAF+VAL+QAC+G +KRWY  TLELQL SLEVC ACR V TLHVRV
Sbjct:    4 KGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRV 56
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BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.010e-17
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   43 GKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRV 198
            G ++C DAF+VALSQACEGG KR YT TLEL LASL++C+A RS  TLHVRV
Sbjct:   18 GPTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRV 69
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BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.500e-17
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   37 AEGKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRV 198
            +E + RC+DAF+VALSQ  EGG+KRWYT TL+LQLASLE C ACRS P LHV V
Sbjct:    3 SEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYV 56
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BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.110e-16
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   37 AEGKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRV 198
            +EG SR  DA I+A+SQA EG  KRWYT TLEL+LASLE C+ACR VPT+HVRV
Sbjct:    3 SEGASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRV 56
[Close]
BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.750e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   43 GKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRV 198
            G SRC+DAF VAL+QAC+GG   WY  T +LQL+SL  C ACRSVPT+H++V
Sbjct:   26 GPSRCLDAFKVALNQACDGGG--WYVSTEQLQLSSLPFCVACRSVPTMHLKV 75
[Close]
BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.970e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   43 GKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASLEVCKACRSVPTLHVRV 198
            G S+C++AF+VAL   C+G K  WY  T +LQLASL++CKACR VPTL + V
Sbjct:    8 GDSQCLEAFVVALDLTCDGEK--WYASTQQLQLASLDLCKACRGVPTLALSV 57
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig108.1083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7F9_ECTSI2.430e-2174.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0Z9_ECTSI5.680e-1970.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LIJ3_9PHAE1.530e-1861.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3G0_ECTSI2.170e-1866.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNI6_9PHAE9.960e-1871.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVM8_9PHAE2.010e-1771.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V9_9PHAE5.500e-1770.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX4_9PHAE4.110e-1670.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFC0_9PHAE8.750e-1363.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G241_ECTSI4.970e-1157.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig108contigC-linearis_contig108:430354..432714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927415.4548318-CDS-C-linearis_contig108:430353..4305141622927415.4548318-CDS-C-linearis_contig108:430353..430514Chordaria linearis ClinC8C monoicousCDSC-linearis_contig108 430354..430514 -
1690879688.4595885-CDS-C-linearis_contig108:430353..4305141690879688.4595885-CDS-C-linearis_contig108:430353..430514Chordaria linearis ClinC8C monoicousCDSC-linearis_contig108 430354..430514 -
1622927415.4673705-CDS-C-linearis_contig108:432671..4327141622927415.4673705-CDS-C-linearis_contig108:432671..432714Chordaria linearis ClinC8C monoicousCDSC-linearis_contig108 432672..432714 -
1690879688.4687712-CDS-C-linearis_contig108:432671..4327141690879688.4687712-CDS-C-linearis_contig108:432671..432714Chordaria linearis ClinC8C monoicousCDSC-linearis_contig108 432672..432714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig108.1083.1prot_C-linearis_contig108.1083.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig108 430354..432714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig108.1083.1

>prot_C-linearis_contig108.1083.1 ID=prot_C-linearis_contig108.1083.1|Name=mRNA_C-linearis_contig108.1083.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=68bp
MDKGFKGDMSTAAEGKSRCVDAFIVALSQACEGGKKRWYTYTLELQLASL
EVCKACRSVPTLHVRVTD
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mRNA from alignment at C-linearis_contig108:430354..432714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig108.1083.1 ID=mRNA_C-linearis_contig108.1083.1|Name=mRNA_C-linearis_contig108.1083.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2361bp|location=Sequence derived from alignment at C-linearis_contig108:430354..432714- (Chordaria linearis ClinC8C monoicous)
ATGGATAAGGGGTTCAAGGGCGACATGAGTACCGCAGCGGAAGGTGAGGG
TTCTGTGGCGTGCGCAGCAAAAGCGGGAAAGTGCATTCCGGGGACAGCGG
CTCTGACCCGTGGCTTGCCGAGGTATCCAAAGATCCAACCTCGCTTGGAG
CCAAACAATCTTAGGGCCTACGATCTCGGTTTGATGAAGAGCTGGGCGAG
AGCCCAATGCGGTTGTCCGAAAAAATGGATAATGTCCCGCGGCGGGTGGT
TGGGTTGCCATTTTCACCCATTTTGGGGCGAAACTGCCGATGCGTGGAAC
CAAATATTATCTCAGCCTGCCCAAAGTGTATCGAAGCACGGTTTGCTTGA
CAGACAGGAGGAGAACGGTTTGCTTGAAAGGAAAGACGAAGATTCGATTC
CCCACGAAGCGTGGTTCTTAAGGTCTTACGACCGGGGGTCTCAAGGTCGC
TTAAGATTTGAGCTATTAAAAATAAGTCGACTACGTACTCGAATCGGAGT
AGGTTAGTTTCCACGCCCGTGTGTAGGTGCCGGCCAGGGTTCAGCACACA
CATCTTTCCGGTTACCAGAATCTCTACTTCTAACCCCCCGAATCTGCCGG
CTCGGAAGGCGTTCCGCCTCTGGCACTTTTTACCGTACATGAAGCACCTG
GTTGTCACACATCAGGTAGACGAATCGATCGATACTGGTTGCTGCTGTAG
ACGGGAAGTCACAAGACTTCTATGTGCAAGGATGTGTGGCTGGGAGATGT
GTGAGCTGTTGTTCTGTTGTGTGGTGGTGGTGTGGGATGCATCATGTGTG
GGGTGAAAGAGAGGGCAAAATAGATTTCGTAAGTCCAACACAGCAGCAGC
AGCAGCAGCAGCGGTGGCGGCCGTAGTAACAGGCCTTGTGGAGACGAAGC
ACTACGTTAGCACCCTCTATGCTGCAGCACAACTCCGTGCATGGACTTTT
CAGTTGCACGTTTATCGCTCCGATGTGTCGACTAGACCGGGTCCGCGGGA
AAACGGGTATCTGTTGAGGTTCCGTTAGTCACTAACCCGGCTGGAGTCCC
AGAAGGGTTGACTCTTTGCCTATACGTTGCCCACCACGCCGCCCGGAAAC
CATAGGCTACCTGAATCATCATCGTGCTGGCCACGAGCTAGCAGTCCCCA
CACGAAACTCAAATCACCCAATTACTTGTAGACTAGCAGGTACCACGCTG
TCGCAAAGCCGTCTCTTGTTCTCCGTGTACCAGCGTCGATATTTCCGTGC
TTCAGTGGGCGGCAACATGGCAACGGTATCGCCTAGCCTTTGTGAGCACC
TGTACTTGGAGCCAAAGACAAGACAAGCCGCTCTGTCGTCTTCTTGGTTC
GGTTTCGAATTCGGTCATGAGGAAGGATCTACGGTGCTAGAGAAAACGGA
GACAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCA
TACACACCGAAAACGAATATTGAATGCCTTTTTGGAACGAGTTACATGCG
CTGGAAAAAAAGAATGTTGGGGACAGCGACCCTGATCCGTGGCTTACCGA
GGCATCCGTAGACTTAACCCTCGCTCAGAGTCAAACACAAGTTTGGGGCG
CATGGTCTTCTTGGGAGGAAGGCAAGTGTTTATGGGGCTGTCCAAAACTT
GAAAACTACCGCGCAGCGAGCGGTGGTTGTTTCGCTGGTTACATCTGGCG
TCGAGCGAAATTGCCGATACATACGTGGAACCAAAGTTCTCAGGCTAGCC
AAACTAGATCGAAGCACGGTTTGATTTACAGGAAGACTCAACTCAAACCG
TGGTTGAGAACCAATGCACGACGACCGGGGTCTTAAAGGCGCTACGTTTT
TTTTACGTCTTGGTTTGCTTTTCACAGAGTGCACTCTGTAGTAGGGGCTC
CGTGACGAAAAGCAACCCATGAGCTATTATTCCTCACGCCACCGCCTGTC
GTTGTCTAGGTGCCAGCCAGGTTTCAGCACAACTCGATGCTCCAGTTGCT
AGAAGAACGTTTTTGCGATGCAGCTGCCATTCTTACCGCTAGTGTCTTGA
CCAAGCAAGGTGTTTCGGTGCCCGAATATTTCGGTGATGTTGACTTTAGA
AAGCACCTTTCGGCGAGCCACATCAATGCGCGTAACCTGCTTGGCCCCTT
TTTTTGTTTTGCTTCGTTCGGTGGAATGCTCTACGGCGATAAAATTTCAG
GGAAGAGCCGGTGCGTTGATGCCTTCATCGTGGCCTTGAGCCAAGCATGC
GAGGGCGGGAAGAAGCGGTGGTATACGTATACGCTGGAACTACAGCTGGC
GTCGCTGGAGGTTTGCAAGGCTTGCAGGAGTGTTCCGACCTTACATGTGC
GTGTGACCGAT
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Coding sequence (CDS) from alignment at C-linearis_contig108:430354..432714-

>mRNA_C-linearis_contig108.1083.1 ID=mRNA_C-linearis_contig108.1083.1|Name=mRNA_C-linearis_contig108.1083.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at C-linearis_contig108:430354..432714- (Chordaria linearis ClinC8C monoicous)
ATGGATAAGGGGTTCAAGGGCGACATGAGTACCGCAGCGGAAGATGGATA
AGGGGTTCAAGGGCGACATGAGTACCGCAGCGGAAGGGAAGAGCCGGTGC
GTTGATGCCTTCATCGTGGCCTTGAGCCAAGCATGCGAGGGCGGGAAGAA
GCGGTGGTATACGTATACGCTGGAACTACAGCTGGCGTCGCTGGAGGTTT
GCAAGGCTTGCAGGAGTGTTCCGACCTTACATGTGCGTGTGACCGATGGA
AGAGCCGGTGCGTTGATGCCTTCATCGTGGCCTTGAGCCAAGCATGCGAG
GGCGGGAAGAAGCGGTGGTATACGTATACGCTGGAACTACAGCTGGCGTC
GCTGGAGGTTTGCAAGGCTTGCAGGAGTGTTCCGACCTTACATGTGCGTG
TGACCGAT
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