mRNA_C-linearis_contig107.1048.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1048.1
Unique NamemRNA_C-linearis_contig107.1048.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:413351..414190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size840
Cds size558
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927403.1344807-UTR-C-linearis_contig107:413350..4136321622927403.1344807-UTR-C-linearis_contig107:413350..413632Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 413351..413632 +
1690879680.7193992-UTR-C-linearis_contig107:413350..4136321690879680.7193992-UTR-C-linearis_contig107:413350..413632Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 413351..413632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927403.1456451-CDS-C-linearis_contig107:413632..4141901622927403.1456451-CDS-C-linearis_contig107:413632..414190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 413633..414190 +
1690879680.7328854-CDS-C-linearis_contig107:413632..4141901690879680.7328854-CDS-C-linearis_contig107:413632..414190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 413633..414190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1048.1prot_C-linearis_contig107.1048.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 413633..414190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1048.1

>prot_C-linearis_contig107.1048.1 ID=prot_C-linearis_contig107.1048.1|Name=mRNA_C-linearis_contig107.1048.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=186bp
MRERERSSSGEAAAREVRSVGGYTSRFHGGSSKQPRTSNCIGGMEKRNMG
ENQRRVGSSAATWGVPVSCSSGYSSICAGSMAQQQKSQQWRQQQQGMSCM
GGRRFATEISCGAYGGGTFWSQYRMAMRDEMERQRQRWLDGQPQKCQGLL
AYDWAGYCFRMAGRFWSNFNLFLSDEEKSTLLAKWR
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mRNA from alignment at C-linearis_contig107:413351..414190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1048.1 ID=mRNA_C-linearis_contig107.1048.1|Name=mRNA_C-linearis_contig107.1048.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=840bp|location=Sequence derived from alignment at C-linearis_contig107:413351..414190+ (Chordaria linearis ClinC8C monoicous)
TATATACAAGAGCAGGGAGCGATGTCCCCGGCGCCGTTCCTGGGTTAACT
TAGTCCCCATACTCAACACAGACACACCCGCGTCAGGCGGTTCAGGGAGG
CCTCCCCACGATGTACTAACACGATATATCGTGTACAGTGCGCGTAGCTA
CGTGCAAGTGTTGGTTCGGCAATGGACGAAGAGACAGCAGCAGCGATGAA
GAAGTTTTGGTGAGAGTGTGAGAGTTTGAGAGAGAGGGTAGCCGAGGCAG
CGGCAGCAAGAGAGAGGGTAATCGAAGAAGCAATGAGAGAGAGAGAAAGG
AGTTCAAGTGGAGAAGCAGCAGCGAGAGAGGTACGGAGTGTGGGCGGGTA
TACGTCAAGGTTTCATGGGGGCAGCAGCAAGCAGCCCCGAACAAGTAATT
GTATCGGAGGGATGGAGAAAAGAAACATGGGAGAGAACCAACGGAGGGTT
GGTTCATCGGCAGCAACCTGGGGCGTGCCGGTGAGTTGCAGCAGCGGATA
CTCCAGCATATGTGCGGGATCGATGGCGCAGCAGCAGAAGTCGCAGCAGT
GGCGACAACAGCAGCAAGGTATGAGCTGTATGGGCGGTCGGAGATTTGCC
ACGGAGATTTCTTGCGGCGCATATGGTGGTGGGACTTTCTGGAGCCAGTA
CAGAATGGCCATGCGAGATGAAATGGAACGTCAACGCCAACGTTGGCTGG
ACGGTCAACCCCAGAAATGTCAAGGTTTGTTGGCTTACGACTGGGCGGGC
TACTGTTTCCGGATGGCAGGCCGCTTCTGGTCGAATTTCAACCTTTTTCT
GTCTGACGAAGAGAAATCTACCTTGTTAGCAAAGTGGCGT
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Coding sequence (CDS) from alignment at C-linearis_contig107:413351..414190+

>mRNA_C-linearis_contig107.1048.1 ID=mRNA_C-linearis_contig107.1048.1|Name=mRNA_C-linearis_contig107.1048.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at C-linearis_contig107:413351..414190+ (Chordaria linearis ClinC8C monoicous)
ATGAGAGAGAGAGAAAGGAGTTCAAGTGGAGAAGCAGCAGCGAGAGAGGT
ACGGAGTGTGGGCGGGTATACGTCAAGGTTTCATGGGGGCAGCAGCAAGC
AGCCCCGAACAAGTAATTGTATCGGAGGGATGGAGAAAAGAAACATGGGA
GAGAACCAACGGAGGGTTGGTTCATCGGCAGCAACCTGGGGCGTGCCGGT
GAGTTGCAGCAGCGGATACTCCAGCATATGTGCGGGATCGATGGCGCAGC
AGCAGAAGTCGCAGCAGTGGCGACAACAGCAGCAAGGTATGAGCTGTATG
GGCGGTCGGAGATTTGCCACGGAGATTTCTTGCGGCGCATATGGTGGTGG
GACTTTCTGGAGCCAGTACAGAATGGCCATGCGAGATGAAATGGAACGTC
AACGCCAACGTTGGCTGGACGGTCAACCCCAGAAATGTCAAGGTTTGTTG
GCTTACGACTGGGCGGGCTACTGTTTCCGGATGGCAGGCCGCTTCTGGTC
GAATTTCAACCTTTTTCTGTCTGACGAAGAGAAATCTACCTTGTTAGCAA
AGTGGCGTATGAGAGAGAGAGAAAGGAGTTCAAGTGGAGAAGCAGCAGCG
AGAGAGGTACGGAGTGTGGGCGGGTATACGTCAAGGTTTCATGGGGGCAG
CAGCAAGCAGCCCCGAACAAGTAATTGTATCGGAGGGATGGAGAAAAGAA
ACATGGGAGAGAACCAACGGAGGGTTGGTTCATCGGCAGCAACCTGGGGC
GTGCCGGTGAGTTGCAGCAGCGGATACTCCAGCATATGTGCGGGATCGAT
GGCGCAGCAGCAGAAGTCGCAGCAGTGGCGACAACAGCAGCAAGGTATGA
GCTGTATGGGCGGTCGGAGATTTGCCACGGAGATTTCTTGCGGCGCATAT
GGTGGTGGGACTTTCTGGAGCCAGTACAGAATGGCCATGCGAGATGAAAT
GGAACGTCAACGCCAACGTTGGCTGGACGGTCAACCCCAGAAATGTCAAG
GTTTGTTGGCTTACGACTGGGCGGGCTACTGTTTCCGGATGGCAGGCCGC
TTCTGGTCGAATTTCAACCTTTTTCTGTCTGACGAAGAGAAATCTACCTT
GTTAGCAAAGTGGCGT
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