mRNA_C-linearis_contig107.1035.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1035.1
Unique NamemRNA_C-linearis_contig107.1035.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: A0A6H5JQE4_9PHAE (DUF775 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQE4_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 1.080e-95
Identity = 144/183 (78.69%), Postives = 161/183 (87.98%), Query Frame = 2 
Query:  248 SVPFCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSS-GAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGPEMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            +VPF +I PGR V+PEFRAIDSSKCV EI+NPREVDE+VFFLLP SPVPPG  AVLYFS+PS++ GAF++WEVLGAL   KPSGVFRT W TNEQ++S  VVQLGVS+E+ED  TNL L  GGVQDRK FALKIAKDLFQF+SSFSQ+TQAGPE+MVVPTNVLDRWI RFESKYNRDPNFMLK
Sbjct:    6 AVPFGIIVPGRPVIPEFRAIDSSKCVAEIVNPREVDELVFFLLPTSPVPPGQTAVLYFSVPSATTGAFEHWEVLGALAASKPSGVFRTGWPTNEQMQSCAVVQLGVSIESEDTATNLGLSAGGVQDRKNFALKIAKDLFQFMSSFSQSTQAGPELMVVPTNVLDRWILRFESKYNRDPNFMLK 188
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: A0A7S2V1Q5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q5_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.030e-60
Identity = 100/179 (55.87%), Postives = 128/179 (71.51%), Query Frame = 2 
Query:  257 FCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGPEMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            F ++ PGR V   FR I  +K V +ILNP+E+ ++ FF LPN  +P G + +LY+S       FDNW VLGAL   KPSGVFRT W TNE L+    +QLGVS+E+ DV+ NL L   GV+DRKQFA KIA DLFQF++SFSQ++  G E+MV+PTN+LDRW++RFE KY  DPNFM+K
Sbjct:   40 FGLLVPGRPVQTAFRQILETKFVADILNPQEISDVCFFTLPNFVIPEGFSVILYYS----PAPFDNWSVLGALSTAKPSGVFRTGWATNESLRGASHLQLGVSIESVDVMKNLNLDETGVEDRKQFAHKIALDLFQFMASFSQSSSQGGELMVIPTNILDRWMERFEQKYRVDPNFMMK 214
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: A0A7S3GYJ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYJ8_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.190e-55
Identity = 87/176 (49.43%), Postives = 125/176 (71.02%), Query Frame = 2 
Query:  257 FCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGPEMMVVPTNVLDRWIQRFESKYNRDPNF 784
            F ++ PGR V+ EF+ +DS+K +T +  P  V E+ FFLLP + +PPG+ A+LY+S+P     F NW ++G++   KPSG+FRTNW  NE++++  VVQLGVS+E  + + NL + G GV+DR  FA KIA DLFQ+++SFS  TQ G  M+ VPT++ D+W++RFE KY  DPNF
Sbjct:   12 FGIVVPGRPVITEFQLVDSTKAMTMLEQPATVPELTFFLLPTTVIPPGYGAILYYSVPP----FQNWVLIGSIDPSKPSGIFRTNWANNEEVRNCPVVQLGVSLEPLETINNLHIAGSGVEDRFAFAHKIALDLFQYMTSFSSGTQNG--MIAVPTSIFDKWMERFERKYRLDPNF 181
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BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: A0A835ZAF1_9STRA (DUF775 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF1_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.910e-54
Identity = 91/182 (50.00%), Postives = 123/182 (67.58%), Query Frame = 2 
Query:  251 VPFCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGP-EMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            VPF ++  GR ++ EFR +D++K   E+  P +V E+VFFLLP SP+PPG  A LY+S P     F NWE +GA+    PS + RT W T+E L+   +VQLGVS+E+ D + NL+  G    DR+ FAL++A+DLF+F+SSFS     G  E++V P NVLDRWI RFE+KY RDPNF+ K
Sbjct:    7 VPFGIVIEGRPLISEFRVVDATKAAVEVQYPVQVAELVFFLLPTSPLPPGTGAALYYSAPR----FQNWEYIGAVEPAAPSAILRTGWPTDEALQQCPMVQLGVSIESLDTINNLKAAGSRDGDRRFFALQVARDLFRFISSFSTTQNTGEQELLVAPANVLDRWIARFEAKYARDPNFIFK 184
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: A0A024TK25_9STRA (DUF775 domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TK25_9STRA)

HSP 1 Score: 187 bits (476), Expect = 8.430e-54
Identity = 94/183 (51.37%), Postives = 125/183 (68.31%), Query Frame = 2 
Query:  245 MSVPFCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGPEMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            M   F  +  GR V+ ++  I  ++ V +I  P +V +I FF+LP SPVPPG AAVLYF++P       NW++LG++   KPS +FRT W T+  +    V+QLGVS+E+ D V NL +   G+++RK FALKIA DLF F+SSFS  T +   MMVVPTN+LDRWI+RFESKY RDPNFM+K
Sbjct:    1 MVAQFGTVIAGRPVITDYIEISPTQFVVDIPYPEQVTDITFFMLPQSPVPPGFAAVLYFAVPH----LQNWQLLGSVFAEKPSAIFRTAWPTHPDVVGQPVIQLGVSIESADNVRNLGIEASGLEERKSFALKIAMDLFNFMSSFS--TSSNSNMMVVPTNLLDRWIERFESKYRRDPNFMMK 177
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: T0SBJ9_SAPDV (DUF775 domain-containing protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0SBJ9_SAPDV)

HSP 1 Score: 183 bits (464), Expect = 5.000e-52
Identity = 89/179 (49.72%), Postives = 126/179 (70.39%), Query Frame = 2 
Query:  257 FCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGPEMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            F ++  GR VV +F  I  ++ V ++  P +V +I FFLLP+SPVPPG+AAVLYF++P       NW++LG++   KPS +FRT+W T+  + +  ++Q+GVS+E  D V NL +   G+ +RK FA KIA DLF F+SSFS +T     +MV+PTN+LDRWI+RFE+KY RDPNFM+K
Sbjct:    4 FGMVIAGRPVVTDFAEISPTQFVVDVPYPEQVTDITFFLLPHSPVPPGYAAVLYFAVPH----LQNWQLLGSVFAEKPSAIFRTSWPTHPDVANQPIIQVGVSIEPVDNVKNLGIEASGLTERKAFAHKIAVDLFNFMSSFSTSTDRS--LMVIPTNLLDRWIERFEAKYRRDPNFMMK 176
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: D0N9M8_PHYIT (DUF775 domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=D0N9M8_PHYIT)

HSP 1 Score: 182 bits (462), Expect = 1.190e-51
Identity = 88/179 (49.16%), Postives = 124/179 (69.27%), Query Frame = 2 
Query:  257 FCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGPEMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            F ++  GR V+ +FR I  +  V +IL P +V ++ FFLLP SPVPPG  AVLYF++P    A  NW++LG +   KPS +FRT+W T+  +    V+QLGVS+E+ D V NL +   G+++RK FALKIA+DLF ++SSFS +       M +PTN+LD+W++RFE+KY RDPNFM+K
Sbjct:   11 FGLVIAGRPVITDFREIGPAHYVVDILEPTQVTDLTFFLLPGSPVPPGFGAVLYFALP----ALQNWQLLGTVFAEKPSAIFRTSWPTHPDVVGQPVLQLGVSIESLDNVKNLGIEASGLEERKAFALKIAQDLFNYLSSFSSSNSQS--YMTIPTNLLDKWMERFEAKYRRDPNFMMK 183
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: K3X1K5_GLOUD (DUF775 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1K5_GLOUD)

HSP 1 Score: 183 bits (465), Expect = 2.490e-51
Identity = 93/179 (51.96%), Postives = 122/179 (68.16%), Query Frame = 2 
Query:  257 FCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGPEMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            F ++  GR V+ +FR I     V EI +P  V ++ FFLLPNSPVPPG+ AVLYF++PS      NW++LG +   KPS +FRT W T+  +    V+QLGVS+E+ D V NL +   G  +RK+FALKIA DLF ++SSFS +T      M +PTN+LDRWI+RFE+KY RDPNFMLK
Sbjct:   67 FGLVIAGRPVLTDFREIGPMHYVVEIGDPTLVADLTFFLLPNSPVPPGYGAVLYFAVPS----LQNWQLLGTVFAEKPSAIFRTGWPTHPDVVGQPVLQLGVSIESLDNVKNLGIEASGFAERKEFALKIAMDLFNYMSSFSTSTNQA--YMTIPTNLLDRWIERFEAKYKRDPNFMLK 239
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: A0A7S3NKR4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKR4_9STRA)

HSP 1 Score: 181 bits (458), Expect = 5.780e-51
Identity = 96/186 (51.61%), Postives = 125/186 (67.20%), Query Frame = 2 
Query:  257 FCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQAT------QAGP-EMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            F V+  GR  V +F  +D+SKCVT +  P EV EI FFLLP + +PP  +AVLY+++         W VLGA+G  KPSG+FRT W T  QL     +QLGVS+E+ DVV NL L   GV+DR+ FA KIA+DLF F++SFS+ +      QA P E+++VPT+V+DRWI RF+ KY RDPNF LK
Sbjct:   14 FGVVIAGRPAVTDFTMVDASKCVTTLTAPGEVSEICFFLLPGAALPPNTSAVLYYTVDGVG-----WTVLGAVGERKPSGIFRTPWHT--QLGVATTLQLGVSLESNDVVDNLNLTSSGVEDRRAFARKIAQDLFDFLASFSRPSSDLAYLQANPAELLIVPTSVIDRWIIRFDEKYQRDPNFYLK 192
[Close]
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Match: A0A5D6XTY2_9STRA (DUF775 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTY2_9STRA)

HSP 1 Score: 180 bits (457), Expect = 6.120e-51
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 2 
Query:  257 FCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVPPGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQVVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQAGPEMMVVPTNVLDRWIQRFESKYNRDPNFMLK 793
            F ++  GR V  +F  ID +     I +P  V ++ FFLLPNSPVPPG+ AVLYF++PS      NW++LG +   KPS +FRT W T+  L    VVQLGVS+E+ D V NL +   G+ +R++FALKIA DLF F++SFS +T      M +PTN+LDRW++RFE+KY RDPNFMLK
Sbjct:    8 FGLVIAGRPVHTDFIEIDPAHYTLSIGDPTAVTDLTFFLLPNSPVPPGYGAVLYFAVPS----LQNWQLLGTVFAEKPSAIFRTGWPTHPDLLGQPVVQLGVSIESLDNVKNLGIEASGLAERREFALKIAMDLFNFMTSFSTSTNQA--YMTIPTNLLDRWMERFEAKYKRDPNFMLK 180
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQE4_9PHAE1.080e-9578.69DUF775 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2V1Q5_9STRA1.030e-6055.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3GYJ8_9STRA4.190e-5549.43Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835ZAF1_9STRA3.910e-5450.00DUF775 domain-containing protein n=1 Tax=Tribonema... [more]
A0A024TK25_9STRA8.430e-5451.37DUF775 domain-containing protein n=3 Tax=Aphanomyc... [more]
T0SBJ9_SAPDV5.000e-5249.72DUF775 domain-containing protein n=2 Tax=Saprolegn... [more]
D0N9M8_PHYIT1.190e-5149.16DUF775 domain-containing protein n=7 Tax=Peronospo... [more]
K3X1K5_GLOUD2.490e-5151.96DUF775 domain-containing protein n=1 Tax=Globispor... [more]
A0A7S3NKR4_9STRA5.780e-5151.61Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A5D6XTY2_9STRA6.120e-5150.84DUF775 domain-containing protein n=1 Tax=Pythium b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:256877..260914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.7
Seed ortholog evalue1.2e-76
Seed eggNOG ortholog2880.D7FMX4
Preferred nameC11orf73
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0006020,GO:0006066,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007030,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019751,GO:0030323,GO:0030324,GO:0030544,GO:0031072,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034605,GO:0034613,GO:0035295,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060541,GO:0061608,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080134,GO:0080135,GO:0140104,GO:0140142,GO:1900034,GO:1901615
EggNOG free text desc.Hsp70 protein binding
EggNOG OGsKOG4067@1,KOG4067@2759
Ec32 ortholog descriptionProtein of unknown function DUF775
Ec32 orthologEc-25_002670.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1439
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1035.1prot_C-linearis_contig107.1035.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 257520..259886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927407.7012222-UTR-C-linearis_contig107:256876..2575191622927407.7012222-UTR-C-linearis_contig107:256876..257519Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 256877..257519 -
1690879683.573925-UTR-C-linearis_contig107:256876..2575191690879683.573925-UTR-C-linearis_contig107:256876..257519Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 256877..257519 -
1622927407.8098636-UTR-C-linearis_contig107:259886..2599041622927407.8098636-UTR-C-linearis_contig107:259886..259904Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 259887..259904 -
1690879683.6997957-UTR-C-linearis_contig107:259886..2599041690879683.6997957-UTR-C-linearis_contig107:259886..259904Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 259887..259904 -
1622927407.8228774-UTR-C-linearis_contig107:260688..2609141622927407.8228774-UTR-C-linearis_contig107:260688..260914Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 260689..260914 -
1690879683.7115746-UTR-C-linearis_contig107:260688..2609141690879683.7115746-UTR-C-linearis_contig107:260688..260914Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 260689..260914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927407.7172499-CDS-C-linearis_contig107:257519..2575771622927407.7172499-CDS-C-linearis_contig107:257519..257577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 257520..257577 -
1690879683.5986552-CDS-C-linearis_contig107:257519..2575771690879683.5986552-CDS-C-linearis_contig107:257519..257577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 257520..257577 -
1622927407.7293904-CDS-C-linearis_contig107:258021..2580951622927407.7293904-CDS-C-linearis_contig107:258021..258095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 258022..258095 -
1690879683.6155887-CDS-C-linearis_contig107:258021..2580951690879683.6155887-CDS-C-linearis_contig107:258021..258095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 258022..258095 -
1622927407.74592-CDS-C-linearis_contig107:258396..2584831622927407.74592-CDS-C-linearis_contig107:258396..258483Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 258397..258483 -
1690879683.6290789-CDS-C-linearis_contig107:258396..2584831690879683.6290789-CDS-C-linearis_contig107:258396..258483Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 258397..258483 -
1622927407.7639642-CDS-C-linearis_contig107:258804..2589251622927407.7639642-CDS-C-linearis_contig107:258804..258925Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 258805..258925 -
1690879683.640552-CDS-C-linearis_contig107:258804..2589251690879683.640552-CDS-C-linearis_contig107:258804..258925Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 258805..258925 -
1622927407.7764888-CDS-C-linearis_contig107:259079..2591861622927407.7764888-CDS-C-linearis_contig107:259079..259186Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 259080..259186 -
1690879683.6543522-CDS-C-linearis_contig107:259079..2591861690879683.6543522-CDS-C-linearis_contig107:259079..259186Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 259080..259186 -
1622927407.7860062-CDS-C-linearis_contig107:259396..2594451622927407.7860062-CDS-C-linearis_contig107:259396..259445Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 259397..259445 -
1690879683.6700068-CDS-C-linearis_contig107:259396..2594451690879683.6700068-CDS-C-linearis_contig107:259396..259445Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 259397..259445 -
1622927407.797907-CDS-C-linearis_contig107:259830..2598861622927407.797907-CDS-C-linearis_contig107:259830..259886Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 259831..259886 -
1690879683.68478-CDS-C-linearis_contig107:259830..2598861690879683.68478-CDS-C-linearis_contig107:259830..259886Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 259831..259886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1035.1

>prot_C-linearis_contig107.1035.1 ID=prot_C-linearis_contig107.1035.1|Name=mRNA_C-linearis_contig107.1035.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=184bp
MSVPFCVIAPGRAVVPEFRAIDSSKCVTEILNPREVDEIVFFLLPNSPVP
PGHAAVLYFSIPSSSGAFDNWEVLGALGHGKPSGVFRTNWGTNEQLKSTQ
VVQLGVSVETEDVVTNLQLGGGGVQDRKQFALKIAKDLFQFVSSFSQATQ
AGPEMMVVPTNVLDRWIQRFESKYNRDPNFMLK*
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mRNA from alignment at C-linearis_contig107:256877..260914-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1035.1 ID=mRNA_C-linearis_contig107.1035.1|Name=mRNA_C-linearis_contig107.1035.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4038bp|location=Sequence derived from alignment at C-linearis_contig107:256877..260914- (Chordaria linearis ClinC8C monoicous)
CTCATTCCCTCTCGTCCCTCCGTTCCTCCTGCTCCTCTCCGTGTCGTGTG
CCGGACGTCCGCATCGTTCTATTGCGAGCAGTGCACACTCCGCCAAGCCC
TTGTTCAGCGCCACCGCGTTAGCACTGTACTTAATACGGAGTACTGCTGT
AGCTTTCTACAGCAGCAACAGCAGGGCTTTGGAGATAGCCAAGCTCAAGG
AAGGATTTCAAACGGGCACGAGAGAAGTGAGCGACCTGCTGTTCCTTTGT
GCAAGTGCGAGGTGTTGTGTGTGTGCCACATGCATGCAGGCCGAGAAAAA
GAAAGAGCCTACAGCTCAGCTCCCATCACGAACCAATTGAACGGCGAACC
TATACGTTCACGACCACGGAGATGATCGAGAACAGGCACGTAGACTTGTG
CTTGCAGAAACCCTTTCTTGGTGGTCGACAGCAGATAGATGGAGATTTCT
CCTTGGCACAGCCGTATGTATACATACCGCCCAATCCGGTAGTCCGATAG
TTGTTCGGGTCTCGATGTCTCAACCCCGATATCATCAAGCCATATCTATC
TAGACTCAGTAGCCTACGCAGGTTTCGTCATTACCCAAACCACTTTGGAT
GAAGTACAGTATCAAAATCGGGAATGTGGGGTTGGGGTTAGGGTTAGGGT
TAGGGTCTGCGTACCCCCTGGTAGTCTATTTCCCTAATACTGGTAATTGT
ACTGCGTAGGCGGTCCTCTAGACTACATGTAGATCCTTGTACCTATCTCC
TCGTTCATCTCTCCAGACGAATTAGTGCATTTTGTGGATGGTTGGTTTGC
ACATGTCACAAACGGAGATGGAGATGCTTCGAGAACCCGCCGAGCGCGAC
GCATTCGAGAGTTCGAGCCCCTGTGCATATATAGTGAAAGCACATGTCGT
GAATCGAGGAACTAGACACTGAAATAAACACCCTGCACACGGGCGATCAT
GTGAGGGAACAAAATTGCCGCCTTCCTCCCCAACCTTCGCACAACTCCAA
CACGAAACAGAGAGGACAGCAGCTTGGCATGTCGGTCCCATTCTGCGTCA
TCGCGCCTGGTAGAGCAGTCGTACCAGAATTCAGGTATCTGATGAGAACG
AAAGATTGGTACTGTATGCTGACTCTAGGTATTTGTAGGAATACTCCTTC
TCATACAGTGATGGACCTTGATCGAGCGCAGCAAATCGCTCCCTTGTACG
TACTATGATAGGAGAGGTCTTGGAAAGTAGGCCTTGCCGATGACATCGTA
GACTGGGTCGTGTACATGCCTTGAAGCGGCGCCCCTACGTTTTGACACAC
CCCCCAGGTAGATCCACTGTGACAGGAATGGAAATGCCGTTTATCGCAGA
TTTATCCTGCCGTTAATTGTTGGACAATCTCCCGTACGTTGACGCCAGAA
AGCCGTGAGCCGCGGATGATCCTTCGTTCTACACGTACACCCCCCTACGT
ACAATTCCTTCGTTTTCAGGGCGATAGATTCATCCAAGTGTGTTACGGAG
ATACTGAACCCGCGAGAGGTAAGAGCCATAGGCCTGAGATGCAAACCTCA
AGCCTGCGAGTTATGTTATTCGTTGCAGTGGTTTACCCCGAATGTAATTT
TGTTTTTTACACAGATGAACTCGTTCTCTGTTCTTTGAACTTGGCATTGG
GACGCCCAATTGGATGGATGAAAGTCTCTCACGTTGAGCGTCACGCCTCC
GTGTTTCCCTGCTTCCGTGCCGTATCAGGTGGATGAGATAGTGTTTTTCC
TTCTCCCAAACTCTCCCGTCCCCCCTGGCCATGCTGCCGTACTGTACTTC
AGCATTCCCAGCTCTTCTGGAGCTTTCGATAATTGGTGAGTACGAAGGTG
CTGTTTCGCACGGCCGCAATCCGCCTCGTTTGCTGGTAGACGAAATTCGT
CGGTCTCAGTCTTGGGTTTTGGCTTCCATCGGATGCATGAGGCTCAACCC
GCTCTATCACTGACGCGTTCGACCATGTACCAATCGAAGGGAGGTGCTCG
GAGCTCTCGGCCATGGAAAACCGTCTGGAGTGTTTAGGACAAATTGGGGT
ACAAATGAGCAGTTGAAGTCAACTCAGGTGGTCCAACTTGGTGTGAGCGT
CGAAACTGAGGTGAGCGTAACGCCACGTCACGTCCTGTGGCACACACGAT
AGATTAGCATGAATGTCCTCGTGGCCCACATATCTAGAGAGCGGGACGGC
ATTCATTCGCTGCGAAAGGACGTGCATCGTGTGTGCAAGCAGAGTTAGGT
GTGTCATGAGGTTGGCTACAAACAAACTTGCTTGCTGCTTTTAGCTCTTC
CATGCGAGGAAAAGCGAAAGCAGCAAGCTGACATTAAGGCACGCAGCGGG
GGTAAAAACCGCGATCATCTTCTCCGACCATGTCGTGTGTGCTGGTTGCT
GCCGCCACCTATCTGTTGCCTCTGACCGCAGGATGTGGTCACCAACCTGC
AACTAGGAGGTGGCGGAGTGCAGGACAGGAAACAATTTGCTCTCAAGATA
GCCAAGGATCTATTTCAGGTACATACATGTAGTTTCCGTGGCGGCATTTC
TGTCTCGGAACGAGTTCCGTTTTGGTTTGTAGGCCAACAGGGGACAACGT
TTTGAGGAAGGATTAGGCATTCGGTGGAATAGTATTCCAAAGCAGGGCTC
AGATTATCTGTGGAGCCATGGTGCTGGCATAGAGCAACCGAAAAAACCAT
ACTCCAATTCACTCCATCCTCTCCTGGCAAATCCAACAAATATTTTTTTC
ATGATCGCGTAACTCTTGACAGATTTTAGTTATGATGCGTGTTGTTGTGG
CTTCGGACTCATCGTGCAGTTTGTGTCGTCGTTCAGTCAAGCGACCCAGG
CCGGTCCCGAGATGATGGTCGTGCCAACAAACGTGCTGGACAGGTGAGCG
TGGTGGATGGGCATGCGTGTGTATCGCCTACTCAAGGGTCGCCTCGCAAC
CCCTCTGGCGTCCGCTTCCGAGAATGGATCGTATGTACCATATGTCAAGT
AGCACATCAGTTCTTTTGAGGATGAGCGCGAACAGCACTCAAGCGAGATT
CGCACGCATACAAAAACTGTGGAGGAGAATTGCGGAGTGCCAAATTGAGC
GCTTCACGTACGTCCATCTCGTGGGTGGTTCTCCTGCTGACCATGCCGCG
CATCGTGCGCTCTCCCTTGGCAACTCTTCTGGGGCTGATCGCTGGTGCAA
GCACGGTATAGCACAACCCTAATTTTACCAATCAATGCCCATTCAACCAC
TTCTTGACGAGAAGTCTCGTCTATTCGTGGGTGATGATGTAGTGATGCTG
TCGGTCGCTCCTTCCCGTTTGTGTATTGTTGAGTCAGGTGGATTCAGCGC
TTCGAATCCAAGTACAACCGAGATCCAAACTTCATGCTCAAGTAGTTGCG
GCTCTGGGTTCGGGCCAGGTTGGAGGGAAAGGGCTTAAAGGCTGTAGTAG
AGTACCAGTTAAAGACAATATGGCGACGTGGGTACAAATGACCATTTTGT
TTGGTGATTTACGGAGATCGTGCTGTTTTCGTCAAGGGGGCGAGGCCTAC
CATTCGCGAAGTGTTGAAGAACACGAAGAGCGGCCGGGGCGTAGTTTTGT
GTGTGATCAGAGAAAGAGAGCTTGGCTAACTGCTGAGGTGTGGGGTCGAG
AAGAGGGGCAAGGAACGGGTGTCTGTTGTCCGCGTACGCTAACTCGCGCA
TCCAACACTGACTTTGGTGTGAGTGTTCAATACAACGGAGGTCTCATTTC
CGGAACTCGTTGGGGCATCTTGCTAGAGCTCTGAACCGTGGTCACACAGA
AGGGTTCCTCTCCCTGAGCCCCCACTCCCACCTTCTGCGGTGCTTGCCTT
GCCGAGATTTTTTACGCGAAAATAGTTGAGCCGTCTCTTCCCTCAAGTTT
TCACACCGGCTAAGCGCCACTGACAGAGCGCGAGAAAAAGTCACTTTGCT
CACTTTGTGTATCAAGCAAAAAAAAAATCACAGGGTCGCGGGGATCAACG
TGCCTACCTCTGTGTGCGAGATTCCGGAAGATGGTCGC
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Coding sequence (CDS) from alignment at C-linearis_contig107:256877..260914-

>mRNA_C-linearis_contig107.1035.1 ID=mRNA_C-linearis_contig107.1035.1|Name=mRNA_C-linearis_contig107.1035.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at C-linearis_contig107:256877..260914- (Chordaria linearis ClinC8C monoicous)
ATGTCGGTCCCATTCTGCGTCATCGCGCCTGGTAGAGCAGTCGTACCAGA
ATTCAGATGTCGGTCCCATTCTGCGTCATCGCGCCTGGTAGAGCAGTCGT
ACCAGAATTCAGGGCGATAGATTCATCCAAGTGTGTTACGGAGATACTGA
ACCCGCGAGAGGGCGATAGATTCATCCAAGTGTGTTACGGAGATACTGAA
CCCGCGAGAGGTGGATGAGATAGTGTTTTTCCTTCTCCCAAACTCTCCCG
TCCCCCCTGGCCATGCTGCCGTACTGTACTTCAGCATTCCCAGCTCTTCT
GGAGCTTTCGATAATTGGTGGATGAGATAGTGTTTTTCCTTCTCCCAAAC
TCTCCCGTCCCCCCTGGCCATGCTGCCGTACTGTACTTCAGCATTCCCAG
CTCTTCTGGAGCTTTCGATAATTGGGAGGTGCTCGGAGCTCTCGGCCATG
GAAAACCGTCTGGAGTGTTTAGGACAAATTGGGGTACAAATGAGCAGTTG
AAGTCAACTCAGGTGGTCCAACTTGGTGTGAGCGTCGAAACTGAGGGAGG
TGCTCGGAGCTCTCGGCCATGGAAAACCGTCTGGAGTGTTTAGGACAAAT
TGGGGTACAAATGAGCAGTTGAAGTCAACTCAGGTGGTCCAACTTGGTGT
GAGCGTCGAAACTGAGGATGTGGTCACCAACCTGCAACTAGGAGGTGGCG
GAGTGCAGGACAGGAAACAATTTGCTCTCAAGATAGCCAAGGATCTATTT
CAGGATGTGGTCACCAACCTGCAACTAGGAGGTGGCGGAGTGCAGGACAG
GAAACAATTTGCTCTCAAGATAGCCAAGGATCTATTTCAGTTTGTGTCGT
CGTTCAGTCAAGCGACCCAGGCCGGTCCCGAGATGATGGTCGTGCCAACA
AACGTGCTGGACAGTTTGTGTCGTCGTTCAGTCAAGCGACCCAGGCCGGT
CCCGAGATGATGGTCGTGCCAACAAACGTGCTGGACAGGTGGATTCAGCG
CTTCGAATCCAAGTACAACCGAGATCCAAACTTCATGCTCAAGTAGGTGG
ATTCAGCGCTTCGAATCCAAGTACAACCGAGATCCAAACTTCATGCTCAA
GTAG
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