mRNA_C-linearis_contig107.1018.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1018.1
Unique NamemRNA_C-linearis_contig107.1018.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 4.600e-28
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:  370 GATLGTGGNQVGSAPSNGAAAATRRAIPGAPDPARAHGYCFGFGADGEGVAEKLKQLFAGEDGYGVGPITAGGCNIP 600
            GATLGTG NQVGSAP+N AAA  RRAIPGAP PARA+G+CFG GADG+G+A KLKQLFAGE+G+G GPIT  GCN P
Sbjct:  488 GATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAP 564
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.530e-23
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:  370 GATLGTGGNQVGSAPSNGAAAATRRAIPGAPDPARAHGYCFGFGADGEGVAEKLKQLFAGEDGYGVGPITAGGCNIP 600
            GA LGTG NQVGSAPS+GAAA  R+ IPG  +P RAHG+CFGFGADG G+ +KL   FAG++G+G GPIT GGC IP
Sbjct:  386 GAALGTGANQVGSAPSDGAAAKMRKPIPGQLNPVRAHGFCFGFGADGVGLPQKLHDKFAGKNGFGDGPITEGGCEIP 462
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.540e-19
Identity = 55/82 (67.07%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   37 QPTKEEDRDRARHSVVDRAQSRMPPGGVSLKPFADMLVLSDEAPRTTGSRKATEANNAMVIDPSSGTLVKSASLKGKIGGRG 282
            Q T   DRD AR SVVDRA+SRMPP G    PFAD LVLSD APRTTGSRKATEANNAM  D S+G  VK+AS K    G G
Sbjct:  307 QATTRVDRDSARQSVVDRAESRMPPIGAPHNPFADSLVLSDTAPRTTGSRKATEANNAMAWDGSAGNWVKAASQKALNSGPG 388
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-19
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:  388 GGNQVGSAPSNGAAAATRRAIPGAPDPARAHGYCFGFGADGEGVAEKLKQLFAGEDGYGVGPITAGGCNIP 600
            G NQVGSAPSNGAAA  R+ IPG  +P + +G+CFGFGADG G+ +KL   FAGE+G+G GPIT GGC IP
Sbjct:  437 GANQVGSAPSNGAAAKVRKPIPGQRNPVKEYGFCFGFGADGVGLDQKLHDKFAGENGFGDGPITEGGCEIP 507
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.990e-19
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:  388 GGNQVGSAPSNGAAAATRRAIPGAPDPARAHGYCFGFGADGEGVAEKLKQLFAGEDGYGVGPITAGGCNIP 600
            G + VG APSNGAAA  R+ IP  P+PA+A G+CFG GADG G+AEKLKQLFAGE+G+G GPIT  GC+ P
Sbjct:  389 GESVVGGAPSNGAAARLRKHIPDPPNPAKARGFCFGIGADGVGLAEKLKQLFAGENGFGKGPITTKGCHTP 459
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: D7FUP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.650e-17
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 LVADYYTNRVDGQPTKEEDRDRARHSVVDRAQSRMPPGGVSLKPFADMLVLSDEAPRTTGSRKATEANNAMVIDPSSGTLVKSASLK 261
            LVADY T R DGQ T +EDRD AR SVV       PPG  ++ P+AD LV  + APRTTGSRKATEANNAMV    +G +VK AS+K
Sbjct:  137 LVADYITTRNDGQATSDEDRDSARKSVVAHTTRAAPPGA-TIDPYADRLVWPENAPRTTGSRKATEANNAMV--KVNGKMVKKASVK 220
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.120e-16
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:  388 GGNQVGSAPSNGAAAATRRAIPGAPDPARAHGYCFGFGADGEGVAEKLKQLFAGEDGYGVGPITAGGCNIP 600
            G NQVGSAPS+GAAA  R+ IPG  +P +AHG+CFG GA G G+A+KL   FA E G+  GPIT GGC  P
Sbjct:  223 GANQVGSAPSDGAAAKMRKPIPGQLNPVKAHGFCFGLGAGGVGLAQKLYDKFASEHGFEEGPITEGGCETP 293
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: A0A6H5JRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.810e-11
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:    1 LVADYYTN-RVDGQPTKEEDRDRARHSVVDRAQSRMPPGGVSLKPFADMLVLSDEAPRTTGSRKATEANNAMVIDPSSGTLVKSASLK-----------GKIGGRGGLTEAQYAN 309
            L ADY T  R D QP  ++DRD AR  VV       PPG  S+ P+AD LV  + APRT GSR+ATEANNA+V+   +G  VK A  +           G   G GG ++ ++ N
Sbjct:   74 LGADYITTTRNDQQPVSDKDRDSARKLVVAHTTKPAPPGA-SISPYADRLVWPENAPRTPGSRRATEANNALVLV--NGKKVKKARAQKYPSGKQSKRNGNSRGPGGASDKEFDN 185
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: A0A6H5JCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.520e-7
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    4 VADYYTNRVDGQPTKEEDRDRARHSVVDR-AQSRMPPGGVSLKPFADMLVLSDEAPRTTGSRKATEANNAMVIDPSSGTLVKSASLKGKIG 273
            + DY T+R+D  P  E DRD AR SVV   A+   PP  V+   +A+      +APR++GSR+ TEANNAMV +   G L K A  KG  G
Sbjct:  285 ILDYATSRIDESPVTEADRDHARKSVVTSLARDPDPPRPVA-NTYANTCEFPADAPRSSGSRRGTEANNAMVPNGRGG-LEKRAVQKGAAG 373
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BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Match: A0A6H5KK46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK46_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-6
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    4 VADYYTNRVDGQPTKEEDRDRARHSVVDR-AQSRMPPGGVSLKPFADMLVLSDEAPRTTGSRKATEANNAMV 216
            + DY T+R+D  P  E DRD AR SVV   A+   PP  V+   +A+      +APR++GSR+ TEANNAMV
Sbjct:  245 ILDYATSRIDESPVTEADRDHARKSVVTSLARDPDPPRPVA-NTYANTCEFPADAPRSSGSRRGTEANNAMV 315
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FLR6_ECTSI4.600e-2876.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWV7_ECTSI3.530e-2367.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8P5_ECTSI1.540e-1967.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5E5_9PHAE2.300e-1964.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU43_9PHAE2.990e-1966.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUP9_ECTSI2.650e-1759.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M5_9PHAE2.120e-1660.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU8_9PHAE3.810e-1142.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCN5_9PHAE6.520e-745.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK46_9PHAE5.430e-647.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:67108..69187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size600
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1018.1prot_C-linearis_contig107.1018.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 67108..69187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.7228563-CDS-C-linearis_contig107:67107..673371622927402.7228563-CDS-C-linearis_contig107:67107..67337Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 67108..67337 -
1690879680.4965732-CDS-C-linearis_contig107:67107..673371690879680.4965732-CDS-C-linearis_contig107:67107..67337Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 67108..67337 -
1622927402.7348402-CDS-C-linearis_contig107:67839..679351622927402.7348402-CDS-C-linearis_contig107:67839..67935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 67840..67935 -
1690879680.505424-CDS-C-linearis_contig107:67839..679351690879680.505424-CDS-C-linearis_contig107:67839..67935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 67840..67935 -
1622927402.747099-CDS-C-linearis_contig107:68268..682801622927402.747099-CDS-C-linearis_contig107:68268..68280Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 68269..68280 -
1690879680.5175154-CDS-C-linearis_contig107:68268..682801690879680.5175154-CDS-C-linearis_contig107:68268..68280Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 68269..68280 -
1622927402.7604606-CDS-C-linearis_contig107:68925..691871622927402.7604606-CDS-C-linearis_contig107:68925..69187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 68926..69187 -
1690879680.5255747-CDS-C-linearis_contig107:68925..691871690879680.5255747-CDS-C-linearis_contig107:68925..69187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 68926..69187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1018.1

>prot_C-linearis_contig107.1018.1 ID=prot_C-linearis_contig107.1018.1|Name=mRNA_C-linearis_contig107.1018.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=200bp
LVADYYTNRVDGQPTKEEDRDRARHSVVDRAQSRMPPGGVSLKPFADMLV
LSDEAPRTTGSRKATEANNAMVIDPSSGTLVKSASLKGKIGGRGGLTEAQ
YANPKTEEEKRRKKKKIEDSAAAGATLGTGGNQVGSAPSNGAAAATRRAI
PGAPDPARAHGYCFGFGADGEGVAEKLKQLFAGEDGYGVGPITAGGCNIP
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mRNA from alignment at C-linearis_contig107:67108..69187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1018.1 ID=mRNA_C-linearis_contig107.1018.1|Name=mRNA_C-linearis_contig107.1018.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2080bp|location=Sequence derived from alignment at C-linearis_contig107:67108..69187- (Chordaria linearis ClinC8C monoicous)
CTGGTGGCGGACTACTACACCAACCGGGTCGATGGACAACCTACGAAGGA
GGAGGACCGCGACAGGGCCCGCCATTCGGTGGTGGACCGCGCCCAATCCA
GGATGCCTCCGGGTGGAGTTTCCCTCAAACCCTTCGCCGACATGCTTGTC
TTGTCCGACGAAGCCCCGCGCACGACGGGGTCACGCAAGGCAACGGAGGC
GAACAACGCCATGGTGATCGACCCCAGCAGCGGGACACTGGTCAAGTCAG
CAAGCCTGAAAGGTGAAGGTCATTGCCCGTGCCGCCCATCGTTGTCACTG
CTTCTTGTGTTCTCGTGGGTCCAACTTGTTGTATCATCGCCAGACAGATT
TGTTTGGGTCATTCTTGTTCGTCCATCACTTGCTTGTTGTTGTTGTTGTT
GTTGTCGTTATTGTTGTTGTTATTGGCGTTGGTGGTGGTGGTTTTCTTGG
ATTTCGTTCGTTTAAGGCCGATGCCCAATCATCGAAGACGACTCCGGCGA
GTGCCTGGACGTCGACGATTTATTATGTTCCCTCGTGTGCCCCGCACCCA
CATAAAAAAATACGGCACCCCCGCTGGCTGCTCTATTCAATGTGTTGATA
CCAAGGCGTGCGTCTGACCCTTTCAATGCAGTATGGCTCACCCGTCGTTC
CTCCGTGTGCCCCGCACCCCACGTACCCACGGCACCCCCGCTGGCTGCTC
CATATAATATATTGATACCATGGCGTGCAATGGACCATGATGTGGCCTCG
GGGTCAAAGATTAATTCTGCTAGTTGATGTTGTTGGCTATTGGTTCTTTT
CTTTCTCGTCATTCGCTATTACCACTGAATTCTCTCGATCCCCTCCCTCG
CGCCTACTTACTCGTTTTTCTTTTTCTCGACATCACGTTCTGGTGGTGGA
CGCACAGGCAAAATCGGAGGTAAGTTTATTTTTTGGTTTGTTGTTGCCGT
CCCCTGTTCCTGTTTCGTCCCATTTGAATAGCCCCCCCGTGTTCCCTCGT
GTGAGAGGCACCCCATGTACCCACGGCACCCCCGCTGGCTGCTCCATAGA
ATATAAGAATGACGTGGCGTGTGTCTGACCCATTGAATTGAATATTTACT
TTTTCCTGCGCCCTTCCATAAGAGGGGGGGTTTCGTTGTGGTTGTTGTTG
TTTTCACACTTACACGCTCCTGTTCTTGTTCGCGCGGACCCTTGCTTTTC
TCCCCCCGTTGTTGTTGTTGCTCTGTGCTCTGCGTGTTCGGTGCTGTCAC
AGGGAGGGGTGGTCTGACCGAAGCTCAATACGCCAACCCGAAGACGGAGG
AAGAGAAGAGGAGGAAGAAGAAGAAAATCGAGGACAGTGCCGCGGCAGGT
GAGTGTGATACAACCTGCGGAAGAAGAAGTCGTTGCAGAACCCATCTTGA
TTTCAGTCTGGAATTTGTTCTTTGCAGTCAATGCTAGACTGCCATTGCTT
GTTTGTTGATTTGTTTGCTATTGTTGTTTACACATTTTTGGCACCACTAA
AGCGCATCCTGACGCCCTACATTGATTGGCCCTACATTTGCTCACCGGTC
TTCCCTCGTGTGCCCCGCACCCGATGAAACCACCTCATCAACGCTCCCTG
TTCAATGGAGTATCTTGATACTGTCGCGTGCAATGGACCATGTTGTGGCC
TCGGGGTCAAAGATGAGGAGCCTGGGCGGTGATATCGCGGTGGTATTAGT
CGAACGGGCTGTTGCTGTTGCTGTTGTTGGTGTTGCTGCTGTTGCGTCGA
ACGCGTCCACTAAATCATATGTATGTGATCCCAGGCTTCGCAATAGCATG
ATCACATTTCCTTTTTCTTCTCGTCGGATATCGTCGTCAACGCGAAAAAG
GTGCGACCCTGGGAACAGGCGGTAACCAGGTAGGAAGCGCCCCCAGCAAC
GGTGCGGCTGCCGCCACGCGCAGGGCCATCCCCGGCGCGCCCGACCCCGC
GAGAGCTCATGGCTATTGCTTTGGCTTCGGGGCGGATGGCGAGGGTGTCG
CCGAGAAGCTCAAGCAACTGTTTGCCGGTGAAGACGGTTACGGGGTCGGG
CCGATCACCGCGGGCGGATGCAACATCCCC
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Coding sequence (CDS) from alignment at C-linearis_contig107:67108..69187-

>mRNA_C-linearis_contig107.1018.1 ID=mRNA_C-linearis_contig107.1018.1|Name=mRNA_C-linearis_contig107.1018.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at C-linearis_contig107:67108..69187- (Chordaria linearis ClinC8C monoicous)
CTGGTGGCGGACTACTACACCAACCGGGTCGATGGACAACCTACGAAGGA
GGAGGACCGCGACAGGGCCCGCCATTCGGTGGTGGACCGCGCCCAATCCA
GGATGCCTCCGGGTGGAGTTTCCCTCAAACCCTTCGCCGACATGCTTGTC
TTGTCCGACGAAGCCCCGCGCACGACGGGGTCACGCAAGGCAACGGAGGC
GAACAACGCCATGGTGATCGACCCCAGCAGCGGGACACTGGTCAAGTCAG
CAAGCCTGAAAGCTGGTGGCGGACTACTACACCAACCGGGTCGATGGACA
ACCTACGAAGGAGGAGGACCGCGACAGGGCCCGCCATTCGGTGGTGGACC
GCGCCCAATCCAGGATGCCTCCGGGTGGAGTTTCCCTCAAACCCTTCGCC
GACATGCTTGTCTTGTCCGACGAAGCCCCGCGCACGACGGGGTCACGCAA
GGCAACGGAGGCGAACAACGCCATGGTGATCGACCCCAGCAGCGGGACAC
TGGTCAAGTCAGCAAGCCTGAAAGGCAAAATCGGAGGCAAAATCGGAGGG
AGGGGTGGTCTGACCGAAGCTCAATACGCCAACCCGAAGACGGAGGAAGA
GAAGAGGAGGAAGAAGAAGAAAATCGAGGACAGTGCCGCGGCAGGGAGGG
GTGGTCTGACCGAAGCTCAATACGCCAACCCGAAGACGGAGGAAGAGAAG
AGGAGGAAGAAGAAGAAAATCGAGGACAGTGCCGCGGCAGGTGCGACCCT
GGGAACAGGCGGTAACCAGGTAGGAAGCGCCCCCAGCAACGGTGCGGCTG
CCGCCACGCGCAGGGCCATCCCCGGCGCGCCCGACCCCGCGAGAGCTCAT
GGCTATTGCTTTGGCTTCGGGGCGGATGGCGAGGGTGTCGCCGAGAAGCT
CAAGCAACTGTTTGCCGGTGAAGACGGTTACGGGGTCGGGCCGATCACCG
CGGGCGGATGCAACATCCCCGTGCGACCCTGGGAACAGGCGGTAACCAGG
TAGGAAGCGCCCCCAGCAACGGTGCGGCTGCCGCCACGCGCAGGGCCATC
CCCGGCGCGCCCGACCCCGCGAGAGCTCATGGCTATTGCTTTGGCTTCGG
GGCGGATGGCGAGGGTGTCGCCGAGAAGCTCAAGCAACTGTTTGCCGGTG
AAGACGGTTACGGGGTCGGGCCGATCACCGCGGGCGGATGCAACATCCCC
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