mRNA_C-linearis_contig106.990.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: D7FSR6_ECTSI (Triosephosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSR6_ECTSI) HSP 1 Score: 391 bits (1004), Expect = 6.400e-130 Identity = 220/307 (71.66%), Postives = 232/307 (75.57%), Query Frame = 2
Query: 47 MKLTSLLVLAGLPAGSSFVAPAKVFHGAGVG--ADRGSTERSSASCQMMARVPFIAGNWKLNPLDLGAAKDLAKAVSEATISVEVEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFKAPVSA 961
MKLTSLL LAGL AGS+FVAPA FHGAGV A RGS SSAS QMMARVPFIAGNWK+NPLD+ +AKDLAK+VSEAT SVEVEVAVIPP PFLVPVKDQVD VDGNKVAVG+QDLYTE AGAFTGA STGML SVGC Y+LCGHSERRSVFGDSDEMVN KVHKVLD GLK ILCIGESKEEYEAGLNKEICAV +GKGL+GV+AEQME++VIAYEP TV ELMACPDIDGALVGGASLVAEKF RIVGFKAPVSA
Sbjct: 1 MKLTSLLTLAGLGAGSAFVAPATAFHGAGVTTTAPRGS---SSASFQMMARVPFIAGNWKMNPLDVDSAKDLAKSVSEATTSVEVEVAVIPPHPFLVPVKDQVDGVDGNKVAVGSQDLYTEDAGAFTGASSTGMLASVGCEYILCGHSERRSVFGDSDEMVNKKVHKVLDQGLKAILCIGESKEEYEAGLNKEICAVHIGKGLTGVTAEQMESIVIAYEP-------------------------------------------------TVYELMACPDIDGALVGGASLVAEKFARIVGFKAPVSA 255
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A835ZJI0_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI0_9STRA) HSP 1 Score: 337 bits (865), Expect = 5.120e-109 Identity = 169/257 (65.76%), Postives = 206/257 (80.16%), Query Frame = 2
Query: 182 MMARVPFIAGNWKLNPLDLGAAKDLAKAVSEATISVE-VEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFKA 949
MMAR P I GNWK+NP D+ +A LA V+ T +E VEV +IPP+PF+ PV+D ++ G+ + VGAQ+ + E GAFTGAVST ML SVGC YVLCGHSERR++F + + ++N+KV KVL ++PILCIGESKEEYE+GLNKE+CAVQ+GK L+GV+AEQM++VVIAYEPVWAIGTGL ATP AQ VH ++RS L KYG VAD VRIQYGGSVTPE+VD+LMACPDIDGALVGGASLVA+KF RI F+A
Sbjct: 1 MMARTPIITGNWKMNPGDMASAVQLAADVAAQTKGLEGVEVGIIPPYPFVPPVRD---ALKGSGITVGAQNAFVEDKGAFTGAVSTTMLLSVGCEYVLCGHSERRTIFKEDNALINSKVLKVLSKNMRPILCIGESKEEYESGLNKEVCAVQLGKNLAGVTAEQMKDVVIAYEPVWAIGTGLVATPEVAQSVHAYIRSWLAGKYGQAVADDVRIQYGGSVTPESVDDLMACPDIDGALVGGASLVADKFARICRFQA 254
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A4D9CPZ8_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ8_9STRA) HSP 1 Score: 333 bits (854), Expect = 1.140e-106 Identity = 175/263 (66.54%), Postives = 202/263 (76.81%), Query Frame = 2
Query: 161 RSSASCQMMARVPFIAGNWKLNPLDLGAAKDLAKAVSEATISVE-VEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFK 946
R + M R PFIAGNWK NP L AA DLAK VS A+ S V+VAV+ PFPFLVPVK+ ++ G+ V +GAQDLYTE GA+TGA S M++SVG +VLCGHSERR++FGD+DE VN K+ KVL GLK ILCIGE+K+EYE G+NK IC +Q+ KGL GV+ EQMENV IAYEPVWAIGTGLTATP AQ VH +R++L E YG VAD V IQYGGSVTPETVDELMA PDIDGALVGGASLV EKF RI+ FK
Sbjct: 43 RGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKVVSTASSSASNVDVAVVVPFPFLVPVKE---TLKGSNVLIGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALFGDTDETVNAKLKKVLAAGLKAILCIGETKDEYELGVNKLICGLQLAKGLKGVTKEQMENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPETVDELMAMPDIDGALVGGASLVGEKFARIINFK 302
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A7S2XYZ2_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYZ2_9STRA) HSP 1 Score: 318 bits (814), Expect = 7.900e-101 Identity = 171/295 (57.97%), Postives = 206/295 (69.83%), Query Frame = 2
Query: 65 LVLAGLPAGSSFVAPAKVFHGAGVGADRGSTERSSASCQMMARVPFIAGNWKLNPLDLGAAKDLAKAVSEATISVEVEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFKA 949
LVLA L G++ ++ F G+ + S RSS M RVPFI GNWK+NP L AK LA+ V EVA+ P PFL PV +DG+ V G + ++ E GA+TGAVS ML++VGC YVL GHSERR +F D ++ KV K+LD+G+KP+LCIGES+EEYEA LNKEIC +Q+ K L+GVSAE+M+ V IAYEPVWAIGTGLTATP AQ VH ++RS + KYG VAD VRIQYGGSVTPETVDELMACPDIDGALVGGASL A KF RIV F++
Sbjct: 4 LVLACLT-GAAVISTVSAFFGSPLSYT--SAMRSSTQLSMADRVPFICGNWKMNPTTLEEAKALAEGVKSGCDGSAAEVAIFTPHPFLYPVGK---ILDGSTVKYGGETVFFEDKGAYTGAVSASMLKTVGCEYVLAGHSERRVLFKTDDSAISRKVRKILDSGMKPVLCIGESREEYEANLNKEICCIQLAKDLAGVSAEEMKLVTIAYEPVWAIGTGLTATPEIAQNVHAYIRSWVAGKYGQEVADEVRIQYGGSVTPETVDELMACPDIDGALVGGASLDAAKFSRIVNFES 292
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A7S4D8V7_HETAK (Triosephosphate isomerase n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8V7_HETAK) HSP 1 Score: 312 bits (800), Expect = 4.960e-98 Identity = 161/268 (60.07%), Postives = 197/268 (73.51%), Query Frame = 2
Query: 158 ERSSASCQMMARVPFIAGNWKLNPLDLGAAKDLAKAVSEATISVEVEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFKAPVSA 961
+ S +MAR P +AGNWK+NP L A LA V+ I + EV + P PFLVPV ++ +DG++V +GAQ+ YTE GAFTG+VST M++S+G YVL GHSERR++F D D +N KV KVL G+KPILCIGE K+E+E GL +++CA+Q+ K L GV+AE+M VVIAYEPVWAIGTGLTATP AQ VH F+R + KYG VAD VRIQYGGSVTPETVDELMA PDIDGALVGGASL AEKFGRI+ FK ++
Sbjct: 76 QSSRLDLSLMARQPIMAGNWKMNPCTLEEAAALAAGVAANPIENDAEVVLFPSHPFLVPVMEK---IDGSQVKLGAQNCYTEDKGAFTGSVSTCMVKSIGVEYVLAGHSERRTLFRDDDGAINRKVKKVLSAGMKPILCIGELKDEFEEGLVEQVCALQLAKDLRGVTAEEMRRVVIAYEPVWAIGTGLTATPEIAQKVHAFIRGWIAGKYGKAVADEVRIQYGGSVTPETVDELMAQPDIDGALVGGASLDAEKFGRIMNFKTAAAS 340
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A835YXR2_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR2_9STRA) HSP 1 Score: 306 bits (784), Expect = 2.170e-96 Identity = 157/266 (59.02%), Postives = 193/266 (72.56%), Query Frame = 2
Query: 152 STERSSASCQMMARVPFIAGNWKLNPLDLGAAKDLAKAVSEATISV-EVEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFK 946
ST + S Q+ AR P IAGNWK NP + A+ LA V+EAT +V V VIPP+PFLVPV++ + +G Q+ Y E GA+TGAVST ML SVGC+YVLCGHSERR+VF + D +N K+ VLD+ + PILCIGESKEEY+AGLNK +CA+Q+ K L GV+ E+M+ +V+AYEPVWAIGTGLTATP AQ VH ++R L + Y VAD V IQYGGSVTP++VD LMA PDIDGALVGGASL KFGRI+ +K
Sbjct: 26 STGARATSTQLDARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGA----LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYK 287
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A7S2UU88_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU88_9STRA) HSP 1 Score: 304 bits (779), Expect = 2.730e-96 Identity = 157/248 (63.31%), Postives = 191/248 (77.02%), Query Frame = 2
Query: 209 GNWKLNPLDLGAAKDLAKAVSEATIS-VEVEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFKA 949
GNWK+NP L A LAK V E EV VIPP PFLVPV D + G+ V +G Q+ + E GA+TGAVST ML+SVG YVL GHSERR++F D D +N KV K+L+ GLKPILCIGE+KEEY+ GL + +C +Q+ K L+ V+AEQM+++VIAYEPVWAIGTGLTATP AQ VHK++RS + +K+GD VA+GVRIQYGGSVTPETVDELMACPDIDGALVGGASLVA+KFGRI +++
Sbjct: 1 GNWKMNPETLDEAVALAKGVVEQVKDGASGEVIVIPPSPFLVPVAD---IIKGSGVQLGGQNAFFEDKGAYTGAVSTCMLKSVGAKYVLAGHSERRTLFRDDDSSINRKVRKILEAGLKPILCIGETKEEYDQGLVELVCGLQISKDLADVTAEQMKDIVIAYEPVWAIGTGLTATPEIAQSVHKYIRSCIAKKFGDEVAEGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVADKFGRICKYQS 245
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A7S0QWG0_9CRYP (Triosephosphate isomerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QWG0_9CRYP) HSP 1 Score: 303 bits (777), Expect = 4.230e-95 Identity = 159/257 (61.87%), Postives = 193/257 (75.10%), Query Frame = 2
Query: 188 ARVPFIAGNWKLNPLDLGAAKDLAKAV--SEATISVEVEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERR--SVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFK 946
AR FIAGNWKLNP L AK LA AV S ++I+ ++++ V P PFL PV + V G KV++GA+DL+TE GAFTG VS GML+SVG YVL GHSERR ++ +SD ++N K KVLD GL PILC+GE+KEEY+ LNK ICA+Q+ KGL+GV+ E+M V IAYEPVWAIGTGLTATP AQ VH ++RS L + Y AD VRIQYGGSVTP+TVD LMACPDIDGALVGGASL+A+KF RI+ +K
Sbjct: 53 ARNSFIAGNWKLNPTTLDEAKALASAVVKSASSITKDMDICVCCPHPFLAPVAE---IVKGTKVSLGAEDLFTEDKGAFTGGVSVGMLKSVGVKYVLVGHSERRQGNIATESDAVINKKTRKVLDAGLSPILCVGETKEEYQLNLNKAICALQLSKGLAGVTKEEMARVTIAYEPVWAIGTGLTATPEIAQEVHAYIRSWLAQMYDKATADTVRIQYGGSVTPDTVDSLMACPDIDGALVGGASLLADKFERIIHYK 306
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A6S9FXW6_HETAK (Triosephosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FXW6_HETAK) HSP 1 Score: 295 bits (755), Expect = 6.380e-92 Identity = 153/253 (60.47%), Postives = 190/253 (75.10%), Query Frame = 2
Query: 191 RVPFIAGNWKLNPLDLGAAKDLAKAVSEATI-SVEVEVAVIPPFPFLVPVKDQVDSVDGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFK 946
R PFIAGNWK+NP L AK LA V+E T + EVE+AV P PF+ PV + ++G+ V VGA+ ++TE GA+TGAVS M++S+G +VL GHSERR +F D+ VN +V K+L+ G+ ILCIGES+ EY+AGLN+EIC VQ+ K L V+ EQM+NVVIAYEPVWAIGTGLTATP AQ VH +R+ + +K+G+ +A RIQYGGSVTPETVDELMACPDIDGALVGGASL AEKF RI F+
Sbjct: 45 RRPFIAGNWKMNPTSLEEAKTLAAKVAELTKENTEVEMAVFAPHPFIYPVAKE---LEGSNVVVGAETIFTEDKGAYTGAVSATMVKSMGGKWVLAGHSERRVLFNTDDDSVNRQVLKILNRGMGCILCIGESQAEYDAGLNQEICTVQLAKDLKDVTPEQMKNVVIAYEPVWAIGTGLTATPEIAQNVHASIRAWVAKKFGEQIAKETRIQYGGSVTPETVDELMACPDIDGALVGGASLDAEKFARICNFE 294
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Match: A0A8J5XLA3_DIALT (Triosephosphate isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLA3_DIALT) HSP 1 Score: 290 bits (742), Expect = 4.230e-90 Identity = 163/291 (56.01%), Postives = 196/291 (67.35%), Query Frame = 2
Query: 95 SFVAPAKVFHGAGVGADRGS-----TERSSASCQMMARVPFIAGNWKLNPLDLGAAKDLAKAVSEATISVEVEVAVIPPFPFLVPVKDQVDSV-DGNKVAVGAQDLYTESAGAFTGAVSTGMLESVGCSYVLCGHSERRSVFGDSDEMVNTKVHKVLDNGLKPILCIGESKEEYEAGLNKEICAVQMGKGLSGVSAEQMENVVIAYEPVWAIGTGLTATPADAQGVHKFVRSLLKEKYGDTVADGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVAEKFGRIVGFKA 949
SF+ A VF + GA + R +A M AR IAGNWK+N + L A LA AV +A++ +VA+ PFPFL + V V G+KV +GAQD GAFTGAVSTGML+SVGC+YVL GHSERRS+FG+SD ++N K KVL GLK ILC+GE KE+ E G ++ A Q+ GL VS EQ+ ++VIAYEPVWAIGTGLTATP AQ H +R ++ Y AD + IQYGGSVTPETVDELMACPDIDGALVGGASLVA+KF RIV FKA
Sbjct: 6 SFITLAAVFTSSAAGARAPARFARAASRVAARPMMAARTALIAGNWKMNTV-LPEALKLAAAVKDASVGAPGDVAICVPFPFL----ESVSKVLAGSKVGLGAQDCSEADKGAFTGAVSTGMLQSVGCAYVLTGHSERRSIFGESDALINLKTKKVLSAGLKCILCVGELKEQREDGTTDKVVAAQLAAGLKDVSEEQLGSIVIAYEPVWAIGTGLTATPEQAQDTHAAIRKWVQGAYSAAAADRLVIQYGGSVTPETVDELMACPDIDGALVGGASLVADKFARIVNFKA 291 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.990.1 >prot_C-linearis_contig106.990.1 ID=prot_C-linearis_contig106.990.1|Name=mRNA_C-linearis_contig106.990.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=306bp MKLTSLLVLAGLPAGSSFVAPAKVFHGAGVGADRGSTERSSASCQMMARVback to top mRNA from alignment at C-linearis_contig106:317865..324412+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig106.990.1 ID=mRNA_C-linearis_contig106.990.1|Name=mRNA_C-linearis_contig106.990.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6548bp|location=Sequence derived from alignment at C-linearis_contig106:317865..324412+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig106:317865..324412+ >mRNA_C-linearis_contig106.990.1 ID=mRNA_C-linearis_contig106.990.1|Name=mRNA_C-linearis_contig106.990.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at C-linearis_contig106:317865..324412+ (Chordaria linearis ClinC8C monoicous)back to top |