mRNA_C-linearis_contig106.986.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.986.1
Unique NamemRNA_C-linearis_contig106.986.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: D8LCI6_ECTSI (zinc_ribbon_16 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI6_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 5.300e-44
Identity = 77/129 (59.69%), Postives = 86/129 (66.67%), Query Frame = 1 
Query:    1 QPLPRCFICLQQIGSLNPETEARRRQFDQLKGKGAAA-------VGSSSSSAWARGGHTGGGGRFGSRGLPQREQGAPQAALNIWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHDFPIVS 366
            +PLPRCFICLQQIG+LNPETEARRRQF QLKG  A+A       +G  S    A GG         +      +QGAPQAAL+IWWSWCNVC      G L+DWF E  TCG RGC+CKCTSHDFPIVS
Sbjct:   19 KPLPRCFICLQQIGTLNPETEARRRQFSQLKGGPASARTNFRGGLGVGSGGYEASGGGXXXXXXXXAAAAALGQQGAPQAALDIWWSWCNVCXXXXXXGHLEDWFAEHDTCGVRGCDCKCTSHDFPIVS 147
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: A0A6H5KJL9_9PHAE (zinc_ribbon_16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL9_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.030e-43
Identity = 82/127 (64.57%), Postives = 90/127 (70.87%), Query Frame = 1 
Query:    4 PLPRCFICLQQIGSLNPETEARRRQFDQLKGKGAAAVGSSSSSAWARGGHTGGGGRFGSRGLPQR------EQGAPQAALNIWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHDFPIVS 366
            PLPRCFICLQQIG+LNPETEARRRQF QLK   A A G+ +S    RGG   G G   + G          +QGAPQAAL+IWWSWCNVCNHG  NG L+DWF E  TCG RGC+CKCTSHD PIVS
Sbjct:  352 PLPRCFICLQQIGTLNPETEARRRQFSQLK---AGAAGARTS---YRGGIGVGSGGHEAPGXXXXXXXALGQQGAPQAALDIWWSWCNVCNHGXXNGHLEDWFAEHDTCGVRGCDCKCTSHDLPIVS 472
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: T2M3U9_HYDVU (WD repeat-containing protein mio (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3U9_HYDVU)

HSP 1 Score: 65.1 bits (157), Expect = 6.910e-10
Identity = 36/119 (30.25%), Postives = 49/119 (41.18%), Query Frame = 1 
Query:    1 QPLPRCFICLQQIGSLNPETE--ARRRQFDQLKGKGAAAVGSSSSSAWARGGHTGGGGRFGSRGLPQREQGAPQAALNIWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHD 351
            QPLPRC IC+  +GSL+  T+    R +F+ +                                            LN W++WC +C HGGH+  L +WFT+   C   GCNC C  HD
Sbjct:  246 QPLPRCSICMINMGSLSSHTQKLGNRAKFENVV----------------------------------------NPYLN-WFTWCQMCRHGGHSVHLIEWFTDHLHCPVTGCNCTCNVHD 323
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: A0A8B6XUY7_HYDVU (WD repeat-containing protein mio-B-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XUY7_HYDVU)

HSP 1 Score: 65.1 bits (157), Expect = 8.230e-10
Identity = 36/119 (30.25%), Postives = 49/119 (41.18%), Query Frame = 1 
Query:    1 QPLPRCFICLQQIGSLNPETE--ARRRQFDQLKGKGAAAVGSSSSSAWARGGHTGGGGRFGSRGLPQREQGAPQAALNIWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHD 351
            QPLPRC IC+  +GSL+  T+    R +F+ +                                            LN W++WC +C HGGH+  L +WFT+   C   GCNC C  HD
Sbjct:  383 QPLPRCSICMINMGSLSSHTQKLGNRAKFENVV----------------------------------------NPYLN-WFTWCQMCRHGGHSVHLIEWFTDHLHCPVTGCNCTCNVHD 460
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: A0A7M5WX31_9CNID (zinc_ribbon_16 domain-containing protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WX31_9CNID)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-7
Identity = 31/117 (26.50%), Postives = 42/117 (35.90%), Query Frame = 1 
Query:    1 QPLPRCFICLQQIGSLNPETEARRRQFDQLKGKGAAAVGSSSSSAWARGGHTGGGGRFGSRGLPQREQGAPQAALNIWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHD 351
            QPLPRC +CL  +GSL+        Q  +L+                                          +   W++WC +C HGGH   L DWF +   C    CNC C + D
Sbjct:  621 QPLPRCSVCLINMGSLSTHQPRTGNQKPKLENN--------------------------------------VNSFQNWFTWCQMCRHGGHAAHLADWFVDHVECPVTSCNCVCNALD 699
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: A0A1D1V136_RAMVA (zinc_ribbon_16 domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1V136_RAMVA)

HSP 1 Score: 57.4 bits (137), Expect = 4.370e-7
Identity = 19/39 (48.72%), Postives = 23/39 (58.97%), Query Frame = 1 
Query:  223 LNIWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKC 339
            L +W++WC  C HGGH   L +WF E   C   GC CKC
Sbjct:  817 LEMWFTWCQTCRHGGHASHLAEWFREHTECAVTGCTCKC 855
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: UPI001D07DE01 (GATOR complex protein MIOS n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D07DE01)

HSP 1 Score: 56.2 bits (134), Expect = 1.110e-6
Identity = 20/55 (36.36%), Postives = 30/55 (54.55%), Query Frame = 1 
Query:  187 LPQREQGAPQAALNIWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHD 351
            L + E  +     + W++WC +C HGGH   + +WF + A C    C+CKC S D
Sbjct:  798 LSRNEDDSKMVEYSSWFTWCQLCRHGGHAAHMTNWFRDHAECPVTACSCKCFSVD 852
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: A0A8K0JX12_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0JX12_LADFU)

HSP 1 Score: 55.1 bits (131), Expect = 2.040e-6
Identity = 34/123 (27.64%), Postives = 49/123 (39.84%), Query Frame = 1 
Query:    1 QPLPRCFICLQQIGSLNPETEARRRQFDQLKGKGAAAVGSSSSSAWARGGHTGGGGRFGSRGLPQREQGAPQAALN---IWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHDFPI 360
            +PLPRC ICL  +G+ +    A++R F +                           R G   +P    G  +  L+    W++WC  C HGGH   +  WF   A C   GC C+C   D  +
Sbjct:  168 KPLPRCAICLINMGTASGFL-AQQRPFSEE--------------------------RIGDALVPAGTSGNKEKKLSEFSSWFTWCQTCRHGGHAMHMAQWFKLHAECPVTGCTCRCMLLDAVV 263
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: UPI001ED870EC (GATOR complex protein MIOS-B n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED870EC)

HSP 1 Score: 55.5 bits (132), Expect = 2.070e-6
Identity = 35/123 (28.46%), Postives = 52/123 (42.28%), Query Frame = 1 
Query:    1 QPLPRCFICLQQIGSLNPETEARRRQFDQLKGKGAA---AVGSSSSSAWARGGHTGGGGRFGSRGLPQREQGAPQAALNIWWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHDFPI 360
            +PLPRC ICL  +G+ +     +R   D+  G   A   AVG+                      +  +E+   +   + W++WC  C HGGH   +  WF   A C   GC C+C S D  +
Sbjct:  801 KPLPRCAICLINMGTPSGFLTQQRLFSDERIGGDVAVSTAVGN----------------------VMMKEKRLSE--FSSWFTWCQTCRHGGHATHMSQWFKLHAECPVTGCTCRCMSLDAVV 899
[Close]
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Match: A0A0N4U6Y3_DRAME (Zinc_ribbon_16 domain-containing protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4U6Y3_DRAME)

HSP 1 Score: 54.7 bits (130), Expect = 3.840e-6
Identity = 21/43 (48.84%), Postives = 24/43 (55.81%), Query Frame = 1 
Query:  232 WWSWCNVCNHGGHNGCLDDWFTEQATCGTRGCNCKCTSHDFPI 360
            W+SWC VC HGGH   L  WF  ++ C   GC CKC   D  I
Sbjct:  842 WFSWCQVCRHGGHISHLRHWFRSRSECPATGCMCKCQDIDTNI 884
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LCI6_ECTSI5.300e-4459.69zinc_ribbon_16 domain-containing protein n=1 Tax=E... [more]
A0A6H5KJL9_9PHAE2.030e-4364.57zinc_ribbon_16 domain-containing protein n=1 Tax=E... [more]
T2M3U9_HYDVU6.910e-1030.25WD repeat-containing protein mio (Fragment) n=1 Ta... [more]
A0A8B6XUY7_HYDVU8.230e-1030.25WD repeat-containing protein mio-B-like n=2 Tax=Hy... [more]
A0A7M5WX31_9CNID1.240e-726.50zinc_ribbon_16 domain-containing protein n=2 Tax=C... [more]
A0A1D1V136_RAMVA4.370e-748.72zinc_ribbon_16 domain-containing protein n=1 Tax=R... [more]
UPI001D07DE011.110e-636.36GATOR complex protein MIOS n=1 Tax=Chrysoperla car... [more]
A0A8K0JX12_LADFU2.040e-627.64Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
UPI001ED870EC2.070e-628.46GATOR complex protein MIOS-B n=1 Tax=Ischnura eleg... [more]
A0A0N4U6Y3_DRAME3.840e-648.84Zinc_ribbon_16 domain-containing protein n=1 Tax=D... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:289947..290971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue6.1e-13
Seed eggNOG ortholog159749.K0STE1
Preferred nameMIOS
KEGG koko:K20407
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001674,GO:0001709,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010506,GO:0010507,GO:0010564,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019898,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030054,GO:0030154,GO:0030716,GO:0031090,GO:0031312,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034198,GO:0034613,GO:0034629,GO:0034641,GO:0035859,GO:0036211,GO:0040020,GO:0042594,GO:0043073,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045165,GO:0045793,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051445,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0061630,GO:0061659,GO:0061700,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071496,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:0140096,GO:1901360,GO:1901564,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928,GO:2000241
EggNOG free text desc.Zinc-ribbon like family
EggNOG OGs2XGG2@2836,KOG1008@1,KOG1008@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927400.6236875-CDS-C-linearis_contig106:289946..2900641622927400.6236875-CDS-C-linearis_contig106:289946..290064Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 289947..290064 -
1690879678.9426324-CDS-C-linearis_contig106:289946..2900641690879678.9426324-CDS-C-linearis_contig106:289946..290064Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 289947..290064 -
1622927400.637105-CDS-C-linearis_contig106:290720..2909711622927400.637105-CDS-C-linearis_contig106:290720..290971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 290721..290971 -
1690879678.9625432-CDS-C-linearis_contig106:290720..2909711690879678.9625432-CDS-C-linearis_contig106:290720..290971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 290721..290971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.986.1prot_C-linearis_contig106.986.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 289947..290971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.986.1

>prot_C-linearis_contig106.986.1 ID=prot_C-linearis_contig106.986.1|Name=mRNA_C-linearis_contig106.986.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=123bp
QPLPRCFICLQQIGSLNPETEARRRQFDQLKGKGAAAVGSSSSSAWARGG
HTGGGGRFGSRGLPQREQGAPQAALNIWWSWCNVCNHGGHNGCLDDWFTE
QATCGTRGCNCKCTSHDFPIVS*
back to top

mRNA from alignment at C-linearis_contig106:289947..290971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.986.1 ID=mRNA_C-linearis_contig106.986.1|Name=mRNA_C-linearis_contig106.986.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1025bp|location=Sequence derived from alignment at C-linearis_contig106:289947..290971- (Chordaria linearis ClinC8C monoicous)
CAGCCCCTGCCAAGGTGCTTCATCTGCCTCCAGCAGATCGGATCCCTCAA
CCCGGAGACAGAGGCACGGAGGCGCCAGTTCGACCAGCTCAAGGGCAAAG
GGGCCGCGGCTGTCGGCAGTAGCAGTAGTAGCGCGTGGGCCAGGGGCGGA
CACACCGGCGGCGGCGGGCGCTTCGGTAGCCGAGGCCTGCCTCAGCGGGA
GCAGGGGGCGCCGCAAGCTGCATTGAACATATGGTGGAGCTGGTGCAACG
TGTAAGTGTTCGGGTGCCGGGTGCTCTCATGCGTTCGTCTGGCGTGTAGG
TAGCAGGCGGACGGCCCCATGTAACGTTTTCCTTCTCGCTTGGTGGCTGC
TTGCTCCAGTCCATGCCTTGTTCGCCCGCGTTTTGGGGTTTTTGTCTCAC
CTCGGGTTGAAGGGGACGGGCCGAAAACGCCATGACCAGGGAAGAGTCGT
TTTGACCTGTTTCAAGTAGGGCCGCATCGCATATCCCGGGTTGATCCAAA
ACTGTGAGAGCGGGGGTGGCACACGAATCGTATAGAGTTGCTACCATCTT
CGACAAACCCGTTGCTACTCGCTCGCTTGAAGCACACCACCCGAACCGTT
GTGATTTCGCGCGAAAAACTATCGTAGAGAAAATAGAATCTAGACGACAC
GTCATGAACCGCCAACCTGAACGCATCTAATGCGGAGGTTGTTTTTGGTG
TCCGGAGCATCGGGTTCTCCCCCGGTTTTCTTGGAATCGGAGGAGAGGAA
GATTGAGCACGTGGCCAGTTCGCAGCTGGTGCGAGGTGCAGTGATATGCC
CGCCTGCTGTTGCCACCTCTGGCTAAGCATCGGCCCTTCCTCTTTCTGTG
TGTGCCATGTGTGTGCACGCATTGCGTGCGGCATTCCCCCAAAACAACAT
CCTCCAGATGCAACCACGGCGGGCACAACGGGTGCCTCGACGACTGGTTC
ACGGAGCAGGCCACGTGCGGGACCCGGGGGTGCAACTGCAAGTGCACCTC
CCACGACTTCCCCATCGTTTCATAA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig106:289947..290971-

>mRNA_C-linearis_contig106.986.1 ID=mRNA_C-linearis_contig106.986.1|Name=mRNA_C-linearis_contig106.986.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at C-linearis_contig106:289947..290971- (Chordaria linearis ClinC8C monoicous)
CAGCCCCTGCCAAGGTGCTTCATCTGCCTCCAGCAGATCGGATCCCTCAA
CCCGGAGACAGAGGCACGGAGGCGCCAGTTCGACCAGCTCAAGGGCAAAG
GGGCCGCGGCTGTCGGCAGTAGCAGTAGTAGCGCGTGGGCCAGGGGCGGA
CACACCGGCGGCGGCGGGCGCTTCGGTAGCCGAGGCCTGCCTCAGCGGGA
GCAGGGGGCGCCGCAAGCTGCATTGAACATATGGTGGAGCTGGTGCAACG
TCAGCCCCTGCCAAGGTGCTTCATCTGCCTCCAGCAGATCGGATCCCTCA
ACCCGGAGACAGAGGCACGGAGGCGCCAGTTCGACCAGCTCAAGGGCAAA
GGGGCCGCGGCTGTCGGCAGTAGCAGTAGTAGCGCGTGGGCCAGGGGCGG
ACACACCGGCGGCGGCGGGCGCTTCGGTAGCCGAGGCCTGCCTCAGCGGG
AGCAGGGGGCGCCGCAAGCTGCATTGAACATATGGTGGAGCTGGTGCAAC
GTATGCAACCACGGCGGGCACAACGGGTGCCTCGACGACTGGTTCACGGA
GCAGGCCACGTGCGGGACCCGGGGGTGCAACTGCAAGTGCACCTCCCACG
ACTTCCCCATCGTTTCATAAATGCAACCACGGCGGGCACAACGGGTGCCT
CGACGACTGGTTCACGGAGCAGGCCACGTGCGGGACCCGGGGGTGCAACT
GCAAGTGCACCTCCCACGACTTCCCCATCGTTTCATAA
back to top