mRNA_C-linearis_contig106.979.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.979.1
Unique NamemRNA_C-linearis_contig106.979.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig106.979.1 vs. uniprot
Match: A0A6H5JD36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD36_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.710e-8
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   10 EEAFLAAVMEEEHGAKKVEEYICNSLVEDRLQEEQAFREAEMAFHAAIDEEERRNVIDTSKLPLYTPELSTHSTIGQK 243
            EEA L+ V+E E+G + V EYI  SL+E+R+Q+EQA RE E+AF A   +       D S  PL  PE S+ S IGQK
Sbjct:  179 EEALLSTVLETENGPEIVAEYIRESLLEERMQDEQAHRELELAFIANEKD-------DGSPQPLLDPEPSSPSPIGQK 249
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BLAST of mRNA_C-linearis_contig106.979.1 vs. uniprot
Match: A0A6H5KHS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-7
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   10 EEAFLAAVMEEEHGAKKVEEYICNSLVEDRLQEEQAFREAEMAFHAAIDEEERRNVIDTSKLPLYTPELSTHSTIGQK 243
            EEA L+ V+E E+G + V E I  SL+E+R+Q+EQA RE E+ F A   +       D S  PL  PELS  S IGQK
Sbjct:  389 EEALLSTVLETENGPEIVAENIRESLLEERMQDEQAHRELELVFSANEKD-------DGSPQPLLDPELSIPSQIGQK 459
[Close]
BLAST of mRNA_C-linearis_contig106.979.1 vs. uniprot
Match: A0A6H5K0Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z3_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.460e-5
Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   10 EEAFLAAVMEEEHGAKKVEEYICNSLVEDRLQEEQAFREA---------EMAFHAAIDEEE----RRNVIDTSKLPLYTPELSTHSTIGQK 243
            EEA L+ V+E E+G + V EYI  SL+E+R+Q+EQA RE            AFH    E +         D S  PL  PELS  S IGQK
Sbjct:  461 EEALLSTVLETENGPEIVAEYIRESLLEERMQDEQAHREELKKQLQYDLVKAFHPDAGELQLAFGANEKDDGSPQPLLDPELSIPSPIGQK 551
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JD36_9PHAE2.710e-848.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHS9_9PHAE1.810e-747.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0Z3_9PHAE1.460e-542.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:202375..202633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927397.8684087-CDS-C-linearis_contig106:202375..2025041622927397.8684087-CDS-C-linearis_contig106:202375..202504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 202376..202504 -
1690879676.7810707-CDS-C-linearis_contig106:202375..2025041690879676.7810707-CDS-C-linearis_contig106:202375..202504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 202376..202504 -
1622927397.877144-CDS-C-linearis_contig106:202519..2026331622927397.877144-CDS-C-linearis_contig106:202519..202633Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 202520..202633 -
1690879676.7928019-CDS-C-linearis_contig106:202519..2026331690879676.7928019-CDS-C-linearis_contig106:202519..202633Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 202520..202633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.979.1prot_C-linearis_contig106.979.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 202376..202633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.979.1

>prot_C-linearis_contig106.979.1 ID=prot_C-linearis_contig106.979.1|Name=mRNA_C-linearis_contig106.979.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=81bp
NCAEEAFLAAVMEEEHGAKKVEEYICNSLVEDRLQEEQAFREAEMAFHAA
IDEEERRNVIDTSKLPLYTPELSTHSTIGQK
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mRNA from alignment at C-linearis_contig106:202375..202633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.979.1 ID=mRNA_C-linearis_contig106.979.1|Name=mRNA_C-linearis_contig106.979.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=259bp|location=Sequence derived from alignment at C-linearis_contig106:202375..202633- (Chordaria linearis ClinC8C monoicous)
AATTGCGCAGAGGAGGCTTTTCTTGCTGCGGTCATGGAGGAGGAGCACGG
CGCGAAGAAGGTCGAGGAGTATATTTGCAACTCGCTGGTGGAGGACCGTC
TGCAGGAGGAGCAGGCGTTTATGCAGCAGGCGTTTCGTGAGGCGGAGATG
GCGTTTCATGCAGCAATCGACGAAGAGGAACGCCGGAACGTCATCGACAC
CTCCAAGCTACCGCTCTACACGCCAGAGCTAAGTACCCACTCGACAATCG
GGCAGAAAC
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Coding sequence (CDS) from alignment at C-linearis_contig106:202375..202633-

>mRNA_C-linearis_contig106.979.1 ID=mRNA_C-linearis_contig106.979.1|Name=mRNA_C-linearis_contig106.979.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at C-linearis_contig106:202375..202633- (Chordaria linearis ClinC8C monoicous)
AATTGCGCAGAGGAGGCTTTTCTTGCTGCGGTCATGGAGGAGGAGCACGG
CGCGAAGAAGGTCGAGGAGTATATTTGCAACTCGCTGGTGGAGGACCGTC
TGCAGGAGGAGCAGAATTGCGCAGAGGAGGCTTTTCTTGCTGCGGTCATG
GAGGAGGAGCACGGCGCGAAGAAGGTCGAGGAGTATATTTGCAACTCGCT
GGTGGAGGACCGTCTGCAGGAGGAGCAGGCGTTTCGTGAGGCGGAGATGG
CGTTTCATGCAGCAATCGACGAAGAGGAACGCCGGAACGTCATCGACACC
TCCAAGCTACCGCTCTACACGCCAGAGCTAAGTACCCACTCGACAATCGG
GCAGAAAGCGTTTCGTGAGGCGGAGATGGCGTTTCATGCAGCAATCGACG
AAGAGGAACGCCGGAACGTCATCGACACCTCCAAGCTACCGCTCTACACG
CCAGAGCTAAGTACCCACTCGACAATCGGGCAGAAA
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