mRNA_C-linearis_contig106.971.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.971.1
Unique NamemRNA_C-linearis_contig106.971.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig106.971.1 vs. uniprot
Match: D8LCJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ7_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 8.630e-36
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = 3 
Query:   78 SIMAVEPLHQEFDFEGRPAQLEKL-MDSPFAAAFCVPPGEDDEQHLVFLGLLEGTGQPLRNLTARVRFSVSSGKRADKEVGPLQAAANGRVYGTVQYPSMKELWPDLHSTQAVRAVEVDLIVEVRSLDRKVRHLRFELKVMYRREKVGRSQ-GASWRP 545
            +++AVE L +EFDF+GR  Q +    DSPFA+ F VP   D+ Q+L F GL   TGQPLR LTARV+FSV+S + A+  VGPLQA  NGRVYG ++YPSM ELWP++ ST AVR V+VD +V++RS       L    KV YR+ +V  S+ GASW P
Sbjct:  464 NVIAVESLREEFDFDGRSYQPDNPPKDSPFASVFSVP-CSDEAQYLAFTGLGH-TGQPLRMLTARVQFSVNSERTAESVVGPLQAGGNGRVYGALRYPSMSELWPEICSTSAVRVVQVDTLVDIRSRQGDFLFLGNGPKVTYRQAQVHSSRKGASWGP 619
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BLAST of mRNA_C-linearis_contig106.971.1 vs. uniprot
Match: D7G8W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 7.240e-17
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 3 
Query:  324 QAAANGRVYGTVQYPSMKELWPDLHSTQAVRAVEVDLIVEVRSLDRKVRHLRFELKVMYRR-EKVGRSQGASWRP 545
            +A  NGRVYG VQ PSMK+LWP+++S  AVR V+VDL VE+RS      HL  ELKV+YRR +  G S+GASWRP
Sbjct:   86 EAGPNGRVYGGVQCPSMKDLWPEVYSAAAVRVVQVDLRVEIRSRSGDFLHLDSELKVIYRRPQDHGSSEGASWRP 160
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BLAST of mRNA_C-linearis_contig106.971.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.290e-13
Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 3 
Query:   84 MAVEPLHQEFDFEGRPAQLEKLMDSPFAAAFCVPPGEDDEQHLVFLGLLEGTGQPLRNLTARVRFSVSSGKRADKEVGPLQAAANGRVYGTVQYPSMKELWPDLHSTQAVRAVEVDLIVEVRSLD-RKVRHLRFELKV 494
            + V    +E DFEGRP        +P +           + H+VF GL + TG   R L   V F V +  +      P+Q AA+GR Y  V YPS++E+WP+L+ T  VRAVEVD+ VEV S D R+ R++   LKV
Sbjct:   47 VVVALARKECDFEGRPLPGGGSGMTPSSTVS----SNGRDTHVVFTGLND-TGHDPRGLRVTVIFGVDAVHQIACVTSPIQVAADGRAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179
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BLAST of mRNA_C-linearis_contig106.971.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.740e-12
Identity = 54/142 (38.03%), Postives = 75/142 (52.82%), Query Frame = 3 
Query:   84 MAVEPLHQEFDFEGRPAQLEKLMDSPFAAAFCVPPGEDDEQHLVFLGLLEGTGQPLRNLTARVRFSVSSGKRADKEVGPLQAAANGRVYGTVQYPSMKELWPDLHSTQAVRAVEVDLIVEVRSLD-RKVRHLRFELKVMYRR 506
            + V    +E DFEGRP        +P +           + H+VF GL   TG   R L   V F V +  +      P+Q AA+GR Y  V YPS++++WP+L+ T  VRAVEVD+ VE+ S D R+ R++   LKV Y R
Sbjct:  225 VVVALARKECDFEGRPLPGGGSGMTPSSTVS----SNGRDTHVVFTGL-HNTGHDPRGLRVTVIFGVDAVHQIACVTSPVQVAADGRAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKVGYTR 361
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCJ7_ECTSI8.630e-3653.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8W7_ECTSI7.240e-1760.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7N4_ECTSI2.290e-1339.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDQ6_9PHAE1.740e-1238.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:96669..99557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_004520.1
Exons5
Model size833
Cds size465
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.8539233-UTR-C-linearis_contig106:96668..967511622927398.8539233-UTR-C-linearis_contig106:96668..96751Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 96669..96751 +
1690879677.4566042-UTR-C-linearis_contig106:96668..967511690879677.4566042-UTR-C-linearis_contig106:96668..96751Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 96669..96751 +
1622927398.9129379-UTR-C-linearis_contig106:99272..995571622927398.9129379-UTR-C-linearis_contig106:99272..99557Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 99273..99557 +
1690879677.5157444-UTR-C-linearis_contig106:99272..995571690879677.5157444-UTR-C-linearis_contig106:99272..99557Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 99273..99557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.8635955-CDS-C-linearis_contig106:96751..967751622927398.8635955-CDS-C-linearis_contig106:96751..96775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 96752..96775 +
1690879677.4686165-CDS-C-linearis_contig106:96751..967751690879677.4686165-CDS-C-linearis_contig106:96751..96775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 96752..96775 +
1622927398.8733428-CDS-C-linearis_contig106:97355..975741622927398.8733428-CDS-C-linearis_contig106:97355..97574Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 97356..97574 +
1690879677.4778364-CDS-C-linearis_contig106:97355..975741690879677.4778364-CDS-C-linearis_contig106:97355..97574Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 97356..97574 +
1622927398.882231-CDS-C-linearis_contig106:98232..983311622927398.882231-CDS-C-linearis_contig106:98232..98331Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 98233..98331 +
1690879677.4864936-CDS-C-linearis_contig106:98232..983311690879677.4864936-CDS-C-linearis_contig106:98232..98331Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 98233..98331 +
1622927398.8910244-CDS-C-linearis_contig106:98714..987801622927398.8910244-CDS-C-linearis_contig106:98714..98780Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 98715..98780 +
1690879677.4968107-CDS-C-linearis_contig106:98714..987801690879677.4968107-CDS-C-linearis_contig106:98714..98780Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 98715..98780 +
1622927398.9029305-CDS-C-linearis_contig106:99215..992721622927398.9029305-CDS-C-linearis_contig106:99215..99272Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 99216..99272 +
1690879677.5053012-CDS-C-linearis_contig106:99215..992721690879677.5053012-CDS-C-linearis_contig106:99215..99272Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 99216..99272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.971.1prot_C-linearis_contig106.971.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 96752..99272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.971.1

>prot_C-linearis_contig106.971.1 ID=prot_C-linearis_contig106.971.1|Name=mRNA_C-linearis_contig106.971.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp
MAVEPLHQEFDFEGRPAQLEKLMDSPFAAAFCVPPGEDDEQHLVFLGLLE
GTGQPLRNLTARVRFSVSSGKRADKEVGPLQAAANGRVYGTVQYPSMKEL
WPDLHSTQAVRAVEVDLIVEVRSLDRKVRHLRFELKVMYRREKVGRSQGA
SWRP*
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mRNA from alignment at C-linearis_contig106:96669..99557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.971.1 ID=mRNA_C-linearis_contig106.971.1|Name=mRNA_C-linearis_contig106.971.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2889bp|location=Sequence derived from alignment at C-linearis_contig106:96669..99557+ (Chordaria linearis ClinC8C monoicous)
CGGTGGCAGGAGGACAAGAGGGGGGAGGGAGCCAACAAAAAAATATCAAA
AAGGAGAGAGACGGGCCCCGAAGGCGGTCGATAATGGCCGTTGAGCCGTT
GCACCAGGTAACGTATGCGGATCGAAGATTGTGCGTACACAACAAATTGG
AGAAAATCCACCAAACCGCCGTGTGGCCGGGGGAGGTTTTGCGCTCCCTT
TGTGATACGCGCGCACTATGTATGTACCCATGAGCAAAGAAGGAGTAGTT
CCAGGGAGGGAGGTGGGTGGTGGTACAATTCCAAAGCCCCAGCTCGAATA
CATGTAGCGCGCCTCTTTGCATGCAGGGCGTGCCTCGTCCACGCTGCTTC
TACAGGGCTGTCGACAAGTTTAGAACCCCCCCAGGGGTGCAGAAAAATCC
ATGTCCTCCTTGGTACATTGCTTCGGCTGTTGCTGGTCGCGTGCCGTACC
GTCGCTCAATTTTCTCCGAAACCCCAGACCGCATAGCATACACCCATCAG
TTTGCCTACAGCTAATACGAAGTATACCAACACTTGTGCCCCGAGCTACG
GGGCGGGGCGACCAACCAGAGGCTGGTGCATACATAACTTTCAATTTTTC
GCTCAACTCAACCGTGTCGTTTTCAGTCTTGTTCTTCCCCTCTGACTTGT
CTCGCTGTGCCTTTCCTTTCTTCGCCTTGCTCCCCAGGAGTTCGACTTCG
AGGGCCGTCCCGCGCAGCTGGAGAAGCTGATGGACTCCCCCTTCGCGGCG
GCCTTCTGCGTGCCCCCCGGCGAGGACGACGAGCAGCACCTGGTCTTCCT
GGGGCTGCTGGAAGGGACGGGGCAGCCGCTGCGGAACCTGACCGCCAGGG
TGCGGTTCTCGGTGTCCTCGGGGAAGAGGGCGGACAAGGAGGTCGGCCCG
CTGCAGGCAAGCTCTCGGTCGGTCTATCTCTGTCGTCGGCCTTATGTAGG
GCCGTACAGAGCACTGCTTCCTATTTTTTTTATGCTCCAAATGCTGCGAT
ACATATGTTGTAGTGAGGGGAGTGTTGAGCAGGGTGTGCGTGTGTTGTCC
TCCCTCCCGAAAATGCTCGGCGGTGGGGCGGTGGGGAAACACACCAAGAT
AGCAACCGTGACGACGGGAGGCTGCGATACATACGTTGTAGTGAGGGGAG
TGTTGAGCAGGGTGTGCTTGTGTTGTCCTCCCTCCCGAAAATGCTCGGCG
GTGGGAAAACACACCAAGATAGCAACCGTGACGAAGGGAGGCTGCGATGC
ACGTGCCGGTTGTGTCGGTTCAGATGGGGTGGGCGGGAGGCGGCCGTGGG
CGATTGATGGTGGTGCGGGTGCGTATAGGACCTCGCACTCAAGCGATAAA
AGGACAGCGTGAAAAGGAAGAATGTATCGTCTCGATGTCAAGGTTAAGGT
CCCCTCCTACCGCCCGCACCAGGATCGTGCAACGGAAGCAGGGGGGGCAG
CAGTAGCGGTGTGCGAAAGACCCTTGGCATGAGCGGCTCTAACGAGCATC
ATCCCCCTTCTCGCGACCCCCCCGTCCCTCCCGAAACAACAAAAATCGTT
AATTTGACATCTAGGCGGCGGCCAATGGGCGAGTGTACGGGACGGTGCAG
TATCCCAGCATGAAGGAGCTCTGGCCAGACTTACACAGCACACAAGCCGT
TAGGGCTGTCGAGGTATGTGCCTGTATCCGGTGATGTAGTGTTAAGAAGG
ACGCTTTTTTTAGGGGGTGTTTTCAGGCTAGATGGTGGCAAATCTAGGGT
GGGGTGGGTGATGGCGCCTTGCACGTCTGGAAGAGGGATACCGATACTGC
AGTTCGCACCCTGCCTTGGCCTTGGCTCGCAGCTCCCACCTCAGAAACGT
CCGCACTCAAATAAGACAAGCTCGCCGGCACACGAGCAGACCGTGTCCTC
GATGACCCTGCCCCTCGGCCGAGGCGTCGTGGTTGACGCTCGCAGAGAGC
GTGACAACAAAAATACAACTCATCGCTTTCGCCTTCCTCGCCCCCCCGCC
TCTTGCCACGCGGCCTGGAACATTTCTGTGGGTGCACCCCGTGCAGGTCG
ACTTGATTGTCGAGGTTCGGTCGTTGGACCGGAAAGTGCGCCACCTTCGA
TTCGAGCTCAAGGTGCGGGCTCCTCACGCCGGGTTGCCGTCGTAAATAGT
TAGGTAGTTGCCGTGCATCTTCTCAACAAAGAGAGAGCGGCGGGGTTTTC
CGGTGTTTTTTGTTTTTGGTCCTGATTTCGGCGCCTACAGCAGTAGTTTC
AGTGAGGTATCTAACAAACGCGCGAAAATCCGTCAACACAAGGGCCTCTT
CCCCTTAAGCGAAACCGAACAAGCTCCCCCCTCGAATTCGAACATCAAAG
CGTTTTTTCCGCGGCTGTTGCCACTTTTTGTCAAGCCCTCTTTCGGCCCC
TATCGTTGCCGTGTGCGTAGCCTTCTGCAACCAACGACGGTGCTGTGTGT
CAGTTCTTGGAAGTTACGAGGGAAGTTTGTTCACCCTGTTCGTTTGTTGT
TGTGCCTCCTTCTGTTCATTGTTTGTTTGTTTTGTCCCGCCGAAAAGGTT
ATGTACCGGCGAGAGAAGGTGGGCAGAAGCCAGGGCGCGTCGTGGAGACC
GTAGGCCTACGACAAAATAACTAACTGGAGAGAGAGAGAGAGTGATTTGA
AGAACTGGAGGGGGGTAACATAGGCATAAGAAGAAACGGGAGAATGCCGT
CTGAGGAAGGTTGGCGTTACTGTAATCTAGCATATTTGAATCCAGCTTTT
TGTACGGCGCAAACAACTTTGGAGCTTGCCGGACACATGTATTTCCCGTT
TGCGGCTTTGAAGCGGTAAGAGTGTAGCGTAGCCTAATTGAGTACGGAGT
GCTTCGTAGGCAATAAACTGCTGCTGTTGTTGTTGGTGG
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Coding sequence (CDS) from alignment at C-linearis_contig106:96669..99557+

>mRNA_C-linearis_contig106.971.1 ID=mRNA_C-linearis_contig106.971.1|Name=mRNA_C-linearis_contig106.971.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at C-linearis_contig106:96669..99557+ (Chordaria linearis ClinC8C monoicous)
ATGGCCGTTGAGCCGTTGCACCAGATGGCCGTTGAGCCGTTGCACCAGGA
GTTCGACTTCGAGGGCCGTCCCGCGCAGCTGGAGAAGCTGATGGACTCCC
CCTTCGCGGCGGCCTTCTGCGTGCCCCCCGGCGAGGACGACGAGCAGCAC
CTGGTCTTCCTGGGGCTGCTGGAAGGGACGGGGCAGCCGCTGCGGAACCT
GACCGCCAGGGTGCGGTTCTCGGTGTCCTCGGGGAAGAGGGCGGACAAGG
AGGTCGGCCCGCTGCAGGAGTTCGACTTCGAGGGCCGTCCCGCGCAGCTG
GAGAAGCTGATGGACTCCCCCTTCGCGGCGGCCTTCTGCGTGCCCCCCGG
CGAGGACGACGAGCAGCACCTGGTCTTCCTGGGGCTGCTGGAAGGGACGG
GGCAGCCGCTGCGGAACCTGACCGCCAGGGTGCGGTTCTCGGTGTCCTCG
GGGAAGAGGGCGGACAAGGAGGTCGGCCCGCTGCAGGCGGCGGCCAATGG
GCGAGTGTACGGGACGGTGCAGTATCCCAGCATGAAGGAGCTCTGGCCAG
ACTTACACAGCACACAAGCCGTTAGGGCTGTCGAGGCGGCGGCCAATGGG
CGAGTGTACGGGACGGTGCAGTATCCCAGCATGAAGGAGCTCTGGCCAGA
CTTACACAGCACACAAGCCGTTAGGGCTGTCGAGGTCGACTTGATTGTCG
AGGTTCGGTCGTTGGACCGGAAAGTGCGCCACCTTCGATTCGAGCTCAAG
GTCGACTTGATTGTCGAGGTTCGGTCGTTGGACCGGAAAGTGCGCCACCT
TCGATTCGAGCTCAAGGTTATGTACCGGCGAGAGAAGGTGGGCAGAAGCC
AGGGCGCGTCGTGGAGACCGTAGGTTATGTACCGGCGAGAGAAGGTGGGC
AGAAGCCAGGGCGCGTCGTGGAGACCGTAG
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