mRNA_C-linearis_contig106.969.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.969.1
Unique NamemRNA_C-linearis_contig106.969.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: D8LCJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ8_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 1.530e-150
Identity = 209/282 (74.11%), Postives = 233/282 (82.62%), Query Frame = 3 
Query:  357 VDKSCATSEFLCDLVAFLHDDIGLETETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLDAEESLLYTTDVNMGDVEKTPVMPVQGGFFVVRPDPEVFEGLVQVLKSTPFSRS-GWGGSMIGLFWGGITVQGILPYYYEHRAPPGITYRAVDRCVYNNMVDRPDCQAADVSNIRSAHFTNCLKPWNCQYPHPKQPLCSRLVERWFQLRIRAEGALGLLPTAPCPTGFGSAYNPMTLVAPKA 1199
            +D +C TSEFLCDLVAFLHD+IGL TE +LRRLGFRVMRPGLPL+L++IED  TR R+  GGCCG AELMK FAYTLT+YHRVVHLDTD I+LQPLD LLDAEESLLYT D+NMG    TPVMPVQGGF VVRPDPEVF+ LVQ++K T F  S GWGGSMIGLFWGG+ VQGILPYYYE RAP G+ YR+VDR VYNNMVDRP CQA D+S +RSAHFTNC KPW C YPHPKQPLCSRL ERWF++R  AE AL L     CPTGF S Y P+TL+APK+
Sbjct:   86 IDAACETSEFLCDLVAFLHDEIGLGTENLLRRLGFRVMRPGLPLSLDEIEDPVTRGRIAKGGCCGLAELMKLFAYTLTEYHRVVHLDTDTIVLQPLDALLDAEESLLYTADINMGS-SYTPVMPVQGGFLVVRPDPEVFQDLVQIVKRTSFYPSKGWGGSMIGLFWGGVNVQGILPYYYERRAPAGVLYRSVDRSVYNNMVDRPSCQAVDISQVRSAHFTNCQKPWECLYPHPKQPLCSRLAERWFEMRTLAESALELPHKEACPTGFRSEYTPITLLAPKS 366
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: A0A6H5JYN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYN4_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 1.910e-111
Identity = 167/218 (76.61%), Postives = 184/218 (84.40%), Query Frame = 3 
Query:  357 VDKSCATSEFLCDLVAFLHDDIGLETETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLDAEESLLYTTDVNMGDVEKTPVMPVQGGFFVVRPDPEVFEGLVQVLKSTPFSRS-GWGGSMIGLFWGGITVQGILPYYYEHRAPPGITYRAVDRCVYNNMVDRPDCQAADVSNIRSAH 1007
            +D +C TSEFLCDLVAFLHD+I L TE +LRRLGFRVMRPGLPLNL++IED  TR R+  GGCCGPAELMK FAYTLT+YHRVVHLDTD I+LQPLD LLDAEESLLYT DVNMG+   TPVMPVQGGF VVRPDPEVF+ LVQV+K TPF  S GW GSMIGLFWGG+ VQGILPYYYE RAP G++YR+VDR VYNNMVDRP CQA D+S  R  H
Sbjct:  144 IDAACETSEFLCDLVAFLHDEIELGTENLLRRLGFRVMRPGLPLNLDEIEDPVTRARIAKGGCCGPAELMKLFAYTLTEYHRVVHLDTDTIVLQPLDALLDAEESLLYTPDVNMGN-SYTPVMPVQGGFLVVRPDPEVFQDLVQVVKRTPFYPSKGWAGSMIGLFWGGVNVQGILPYYYERRAPAGVSYRSVDRSVYNNMVDRPSCQAVDISQERPLH 360
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: W7U427_9STRA (Glycosyl transferase, family 8 (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U427_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.390e-60
Identity = 111/276 (40.22%), Postives = 169/276 (61.23%), Query Frame = 3 
Query:  372 ATSEFLCDLVAFLHDDIGLETETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLDAEE-SLLYTTDVNMGDVEKTPVMPVQGGFFVVRPDPEVFEGLVQVLKSTPFSR-SGWGGSMIGLFWGGITVQGILPYYYEHRAPPGITYRAVDRCVYNNMVDRPDCQAADV-SNIRSAHFTNCLKPWNCQYPHPKQPLCSRLVERWFQLRIRAEGALGLLPT-APCPTGFGSAYNPMTLV 1187
            ATS++  D +A +H ++   +   LRR G++V+   +P+++ DI+    RE +   GCCG  EL+K +A+TLTDYHRVVHLD D+++LQP+D+L D E+ + +YT D  M + E+     VQGGF ++RP+   FE LV  +K   F + SGWGG  IG  +GG+T+QG+LPYY+   + P ++ + +D C YN M D+P C+ A +  +++S HFT C KPW+C   H +   C     +WF+LR   E    +L T A      G  Y+P+T +
Sbjct:    1 ATSKYGVDFIAIVHPNV-TTSRAALRRSGWKVIERDIPVDITDIQGTFLREHIAKSGCCGATELLKLYAWTLTDYHRVVHLDMDSMLLQPMDELFDKEDKTFMYTCDYGMTN-ERLKACMVQGGFLLLRPNVTEFERLVDTVKIGDFRQGSGWGGKGIGWGYGGMTIQGLLPYYFLSLSDPELSLQ-LDHCKYNTMFDQPQCKNASLFPSVKSVHFTVCQKPWSCINTHKEA--CEYFKSKWFELRDELE----VLETGAHAEACKGGQYHPLTYL 267
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: A0A7S0SWJ4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWJ4_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.720e-60
Identity = 112/272 (41.18%), Postives = 167/272 (61.40%), Query Frame = 3 
Query:  357 VDKSCATSEFLCDLVAFLHDDIGLETETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLDAEESLLYTTDVNM-GDVEKTPVMPVQGGFFVVRPDPEVFEGLVQVL-KSTPFSRSGWGGSMIGLFWGGITVQGILPYYYEHRAPPGITYRAVDRCVYNNMVDRP----------------DCQAADVSNIRSAHFTNCLKPWNC-QYPHPK-QPLCSRLVERWFQLRIRAE 1112
            + KS   S++  +L+AF+  ++   +  +L+  G++V+   LP+ L++IE+K   +R+K  GCCG  E +K +A+TLT+YHRVVHLD D+++LQ +D+L D ++ +LYT D  M GD   +PV P QGGF VVRP    F    +++ K    S SGWG + IG FWGG T+QGI+PYYY +      +Y  ++RCVYN MVD P                DC+   + N++SAHFT C KPW C ++ + K + LC +L ++WF+LR   E
Sbjct:   27 IIKSHKISKYDAELIAFVVSNVQT-SRPILQAYGWKVIEKKLPVELDEIENKKYADRMKDSGCCGADEFLKLWAFTLTEYHRVVHLDMDSVVLQNMDELYDIDKEMLYTGDYGMKGD---SPVPPAQGGFLVVRPSLTTFSKFQEIIRKGDHSSSSGWGNTHIGNFWGGTTIQGIIPYYY-YSIDQNNSYE-LNRCVYNCMVDNPYHKNTFNCLNNQPKCEDCRLQRIENVKSAHFTICQKPWTCTEHTNIKNKDLCEKLHKKWFELRNELE 292
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: A0A482SAB1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAB1_9ARCH)

HSP 1 Score: 207 bits (527), Expect = 2.150e-58
Identity = 111/273 (40.66%), Postives = 152/273 (55.68%), Query Frame = 3 
Query:  378 SEFLCDLVAFLHDDIGLETETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLDAEESLLYTTDVNMGDVEKTPVMPVQGGFFVVRPDPEVFEGLVQVLKSTPFSRSGWGGSMIGLFWGGITVQGILPYYYE--HRAPPGITYRAVDRCVYNNMVDRP----------------DCQAADVSNIRSAHFTNCLKPWNCQYPHPKQPL--CSRLVERWFQLRIRAEGALGLLPT 1136
            S+F  DL+AF+   +   T TVLR+ G++++   LP+ L +I++K   +R+K  GCCG  E +K +AYTLT Y RV+HLD D II + LD L+  ++ LLYT D NM     +PV P QGGF V+RP  E F+    +++       GWGGS IG FWGG T+QGI+PY+Y   H          ++RC YNNMVD P                DC+ +D     +AHFT C KPW C   +    +  C     +WFQLR   E  LG+ P+
Sbjct:   92 SDFNIDLIAFVTKKVKT-TRTVLRKFGWKILEKDLPVALSEIQNKDYADRMKDSGCCGADEFLKLWAYTLTQYERVIHLDMDCIIFKNLDKLVRIDKELLYTGDYNMKG--GSPVAPAQGGFLVIRPSLERFKEFQAIIRKGDHGPQGWGGSHIGNFWGGQTIQGIMPYFYHVIHNGDG----EELNRCEYNNMVDNPYHKNTKRCIDGHETCEDCRLSDPEQAHTAHFTICQKPWTCVLNNNPNNMVNCKAFHTKWFQLRDEFEQDLGIDPS 357
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: A0A7S3NFL9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFL9_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.700e-58
Identity = 109/277 (39.35%), Postives = 155/277 (55.96%), Query Frame = 3 
Query:  378 SEFLCDLVAFLHDDIGLETETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLD------AEESLLYTTDVNMGDVEKTPVMPVQGGFFVVRPDPEVFEGLVQVLKSTPFSRS-GWGGSMIGLFWGGITVQGILPYYYEHRAPPGITYRAVDRCVYNNMVDRP----------------------DCQAADVSNIRSAHFTNCLKPWNCQYPH---PKQPLCSRLVERWFQLRIRAE 1112
            S++   L+AF+   I  +T T L   G+RV+   LPL + DI+ +  R R++  GCCG  EL+K +A+TLT+YHRVVH+D D +ILQPLD+L D       +   +YT D  M         P QGGF + +PD EVF  LV V++   F    GWGG+ +G +WGG+T+QG++PY++E +  PG  + AVD C+YNNM   P                      DC+  DV  I++ HFT C KPW C+      P  PLC++L  +W+ +R   E
Sbjct:  103 SKYGVALIAFVSPAISKKTRTALEACGYRVLERDLPLRIADIQGEYLRNRIEKNGCCGAWELLKLYAWTLTEYHRVVHVDMDVLILQPLDELYDDLKIWGPQVRAVYTYDWTMARPPWGTNPPTQGGFIIAKPDIEVFNSLVDVVRKGDFQGGKGWGGTGVGAYWGGMTIQGLVPYFFE-KLRPGSGF-AVDECIYNNMATNPRSVGGFDKGECRDGTKPPRKCKDCRLVDVETIKTTHFTICQKPWECRGLSNNCPYCPLCTKLHAKWYDIRKEME 377
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: A0A836C6W8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 9.120e-58
Identity = 114/282 (40.43%), Postives = 160/282 (56.74%), Query Frame = 3 
Query:  357 VDKSCATSEFLCDLVAFLHDDIGLETETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKS--GGCCGPAELMKFFAYTLTDYH------RVVHLDTDAIILQPLDDLLDAEESLLYTTDVNMGDVEKTPVMPVQGGFFVVRPDPEVFEGLVQVLKSTPFSRSGWGGSMIGLFWGGITVQGILPYYYEHRAPPGITYRAVDRCVYNNMVDRPDCQAADVSNIRSAHFTNCLKPWNCQYPHPKQPLCSRLVERWFQLRIRAEGALGLLPTAPCPTGFGSAYNPM 1178
            +D SCA S++ C  VA L  ++ ++  ++L   G+RV+  GLPL+L+ I+    RER+K+   GCCG  EL+K +A+TLT+YH      RV+H+D DA++LQPLD+ +  +  L+YT D  M   +    MPVQGGF ++RP  E+F+ LV++++   F+  GW  S IG FWGG T+QG+L YYY    P        D CV NNM+   DC+  D     S HFT C KPW C    P    C    ++WF++R  A   L L P   C  G    Y P 
Sbjct:   59 IDLSCAHSDYQCKFVALLDPEVPVQRRSLLTAHGWRVLERGLPLDLDTIKTD-LRERLKTTTAGCCGAKELIKLWAFTLTEYHSADSNNRVIHVDIDAMVLQPLDEWIAKDVDLVYTEDAPMASNKHN--MPVQGGFLLLRPSLEIFQTLVEIVRKGDFTGDGWNKSGIGWFWGGDTIQGLLAYYYRAVKPERAFI--ADPCVVNNMLI-DDCRTRDPLETYSYHFTLCQKPWKCLGEPPDY--CQYAWKKWFEIRDAAIAGLQLEPMEACVDGH---YRPF 329
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: A0A7R9U0G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0G1_9STRA)

HSP 1 Score: 205 bits (521), Expect = 4.340e-57
Identity = 99/215 (46.05%), Postives = 139/215 (64.65%), Query Frame = 3 
Query:  411 HDDIGLETETV--------LRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLDAEESLLYTTDVNMGDVEKTPVMPVQGGFFVVRPDPEVFEGLVQVLKSTPFSRSGWGGSMIGLFWGGITVQGILPYYYEHRAPPGITYRAVDRCVYNNMVDRPDCQAADVSNIRSAHFTNCLKPW 1031
            H  + L TE V        L +LGFR+++   PL +EDIE +  R ++   GCCG  EL+K +++TLT++  VVHLDTD+++ Q +D+L   EES+LYT+D  M    K  V PVQGGFFVVRP   VF  +V V++   F++ GWG   +G F+GG+T+QG+LPY+Y   AP   +   +DRC+YNNMV+ P C+A     I++AHFT C KPW
Sbjct:  220 HHFVALVTEEVFEGKSAATLAKLGFRLVKKSAPLRVEDIEGEFLRSKIADDGCCGIDELIKLYSFTLTEFDHVVHLDTDSMVAQNMDELWGHEESMLYTSDYGMAK-GKPSVPPVQGGFFVVRPSLTVFSAMVDVVRKGHFTQRGWGDKRVGRFYGGMTIQGLLPYFYAFLAPEEASAE-LDRCIYNNMVENPRCKAIPTEEIKNAHFTTCQKPW 432
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: A0A7S3XNK0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNK0_HETAK)

HSP 1 Score: 199 bits (505), Expect = 8.490e-56
Identity = 112/300 (37.33%), Postives = 157/300 (52.33%), Query Frame = 3 
Query:  357 VDKSCATSEFLCDLVAFLHDDIGLETETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLDAEESLLYTTDVNMGDVEKTP-----------------VMP-VQGGFFVVRPDPEVFEGLVQVLKSTPFSRSG-WGGSMIGLFWGGITVQGILPYYYE--HRAPPGITYRAVDRCVYNNMVDRPD---CQAADVSNIRSAHFTNCLKPWNCQYPHPKQPLCSRLVERWFQLRIRAEGALGLLPTAPCPTGFGSAYNPMTL 1184
            V  +C  SE+  DL A +H +   +++  L +LG++V    LPL   +I+ +  ++R+   GCCG  EL+K  AY LTDY RV+ LD D+++L+  DDL    E  LYT D  M   +  P                 + P VQGGF +VRP+ EV++  V++ +   F   G WGGS IG FWGG+T+QG++ YYY   HR         VDRC+YNNM D P+   C+   +  ++  HFT C KPW+C  P    P C      W  LR + E +LGL P+  C       Y  M L
Sbjct:   25 VRTACRDSEYDIDLFAIVHKN-ATQSQQWLSKLGYKVFVRDLPLQHHEIQGEYLKKRITKSGCCGMDELLKLHAYALTDYERVLALDMDSMVLRCPDDLFARPEDALYTYDFGMMPKQNRPSALQSALQAFHLVDADKMKPAVQGGFILVRPNIEVYKEYVEIFRVGDFRERGQWGGSGIGHFWGGVTIQGVVSYYYNYLHRGKGA----EVDRCIYNNMADAPENGRCRETPLEQVKGVHFTVCRKPWDCPGPKEGHPQCQAFHREWRALRSQFESSLGLEPSDVCRGAGSKNYQLMDL 319
[Close]
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Match: A0A7S1UJ30_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ30_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.170e-55
Identity = 107/265 (40.38%), Postives = 149/265 (56.23%), Query Frame = 3 
Query:  393 DLVAFLHDDIGLET-ETVLRRLGFRVMRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLDTDAIILQPLDDLLDAEESLLYTTDVNM-GDVEKTPVM-------PVQGGFFVVRPDPEVFEGLVQVLKSTPFSRSG-----------WGGSMIGLFWGGITVQGILPYYYEHRAPPGITYRAVDRCVYNNMVDRPDCQAADVSNIRSAHFTNCLKPWNCQ-YPHPKQPLCSRLVERWFQLRIRAEGALG 1124
            D +AFL DD   E  E  L+R G+  +R  LP+  E+IED   RE V   GCCG AE +K +AY   +YH+VV LD D+++L  LDDL +A+ SL +T D+ M    +K   +       P QGGF +V P  + ++ L  +++   F   G           W G+ IG +WGG TVQG+LPYYY   AP G +   VD C YNNMVD  +CQ   V  +++AHFT C KPW C+ +    Q LC +L ++W++LR+      G
Sbjct:   69 DFIAFLLDDAVTEAMEESLKRFGWTTLRKPLPVPYEEIEDATYREMVDKAGCCGAAEYLKLYAYAQLEYHKVVLLDMDSLVLGCLDDLFEADASLQFTYDMGMCSRCQKNATLEHGGKVPPYQGGFLLVSPSMKHYDALTAIIREGDFREGGAKNAPGKKGIAWKGTRIGYYWGGRTVQGLLPYYYTVEAP-GESLE-VDMCAYNNMVDNEECQGVPVDYVQNAHFTVCQKPWKCKRWYRENQALCEQLHDKWYELRLEVGKEFG 331
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCJ8_ECTSI1.530e-15074.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYN4_9PHAE1.910e-11176.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U427_9STRA2.390e-6040.22Glycosyl transferase, family 8 (Fragment) n=3 Tax=... [more]
A0A7S0SWJ4_9STRA2.720e-6041.18Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A482SAB1_9ARCH2.150e-5840.66Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3NFL9_9STRA2.700e-5839.35Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836C6W8_9STRA9.120e-5840.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U0G1_9STRA4.340e-5746.05Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3XNK0_HETAK8.490e-5637.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1UJ30_9STRA1.170e-5540.38Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:60886..67080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.0
Seed ortholog evalue5.3e-104
Seed eggNOG ortholog2880.D8LCJ8
Hectar predicted targeting categoryother localisation
EggNOG OGs2B6VE@1,2S0N3@2759
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-03_002640.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1500
Cds size759
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.6184523-UTR-C-linearis_contig106:60885..610351622927398.6184523-UTR-C-linearis_contig106:60885..61035Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 60886..61035 +
1690879677.2739003-UTR-C-linearis_contig106:60885..610351690879677.2739003-UTR-C-linearis_contig106:60885..61035Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 60886..61035 +
1622927398.628865-UTR-C-linearis_contig106:61910..621201622927398.628865-UTR-C-linearis_contig106:61910..62120Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 61911..62120 +
1690879677.283658-UTR-C-linearis_contig106:61910..621201690879677.283658-UTR-C-linearis_contig106:61910..62120Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 61911..62120 +
1622927398.6376557-UTR-C-linearis_contig106:62822..629291622927398.6376557-UTR-C-linearis_contig106:62822..62929Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 62823..62929 +
1690879677.2916477-UTR-C-linearis_contig106:62822..629291690879677.2916477-UTR-C-linearis_contig106:62822..62929Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 62823..62929 +
1622927398.725334-UTR-C-linearis_contig106:66806..670801622927398.725334-UTR-C-linearis_contig106:66806..67080Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 66807..67080 +
1690879677.3748114-UTR-C-linearis_contig106:66806..670801690879677.3748114-UTR-C-linearis_contig106:66806..67080Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 66807..67080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.6460652-CDS-C-linearis_contig106:62929..629741622927398.6460652-CDS-C-linearis_contig106:62929..62974Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 62930..62974 +
1690879677.2996316-CDS-C-linearis_contig106:62929..629741690879677.2996316-CDS-C-linearis_contig106:62929..62974Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 62930..62974 +
1622927398.6540935-CDS-C-linearis_contig106:63544..636611622927398.6540935-CDS-C-linearis_contig106:63544..63661Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 63545..63661 +
1690879677.309251-CDS-C-linearis_contig106:63544..636611690879677.309251-CDS-C-linearis_contig106:63544..63661Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 63545..63661 +
1622927398.6676476-CDS-C-linearis_contig106:64332..644911622927398.6676476-CDS-C-linearis_contig106:64332..64491Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 64333..64491 +
1690879677.3187664-CDS-C-linearis_contig106:64332..644911690879677.3187664-CDS-C-linearis_contig106:64332..64491Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 64333..64491 +
1622927398.6809182-CDS-C-linearis_contig106:64910..650151622927398.6809182-CDS-C-linearis_contig106:64910..65015Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 64911..65015 +
1690879677.3270562-CDS-C-linearis_contig106:64910..650151690879677.3270562-CDS-C-linearis_contig106:64910..65015Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 64911..65015 +
1622927398.6894047-CDS-C-linearis_contig106:65806..659101622927398.6894047-CDS-C-linearis_contig106:65806..65910Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 65807..65910 +
1690879677.3365443-CDS-C-linearis_contig106:65806..659101690879677.3365443-CDS-C-linearis_contig106:65806..65910Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 65807..65910 +
1622927398.7009318-CDS-C-linearis_contig106:66113..662221622927398.7009318-CDS-C-linearis_contig106:66113..66222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 66114..66222 +
1690879677.3491304-CDS-C-linearis_contig106:66113..662221690879677.3491304-CDS-C-linearis_contig106:66113..66222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 66114..66222 +
1622927398.7137194-CDS-C-linearis_contig106:66686..668061622927398.7137194-CDS-C-linearis_contig106:66686..66806Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 66687..66806 +
1690879677.3643281-CDS-C-linearis_contig106:66686..668061690879677.3643281-CDS-C-linearis_contig106:66686..66806Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 66687..66806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.969.1prot_C-linearis_contig106.969.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 62930..66806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.969.1

>prot_C-linearis_contig106.969.1 ID=prot_C-linearis_contig106.969.1|Name=mRNA_C-linearis_contig106.969.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=253bp
MRPGLPLNLEDIEDKPTRERVKSGGCCGPAELMKFFAYTLTDYHRVVHLD
TDAIILQPLDDLLDAEESLLYTTDVNMGDVEKTPVMPVQGGFFVVRPDPE
VFEGLVQVLKSTPFSRSGWGGSMIGLFWGGITVQGILPYYYEHRAPPGIT
YRAVDRCVYNNMVDRPDCQAADVSNIRSAHFTNCLKPWNCQYPHPKQPLC
SRLVERWFQLRIRAEGALGLLPTAPCPTGFGSAYNPMTLVAPKAGGSLSE
GP*
back to top

mRNA from alignment at C-linearis_contig106:60886..67080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.969.1 ID=mRNA_C-linearis_contig106.969.1|Name=mRNA_C-linearis_contig106.969.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6195bp|location=Sequence derived from alignment at C-linearis_contig106:60886..67080+ (Chordaria linearis ClinC8C monoicous)
GCCCGCTTCAGCTCGGCGGCCAAGCACGGCTTGCTCTTCTGTGGCCTGCC
GCTCGCTGTGCTGTCGTATGCGGTCGTTGGCTGGCGGGCGTGGAACAGGA
GGGGCGGGCCGATTGCGTCGGTGGCCCGGAGAGGGTGCTTCGGGACACAG
GTGGGAGGGGAGGTGTTAAGGTTTAGAGGGGCTAGACTATCCCCGGAACC
AAAGTTTTGCATTCTTTTGCTTTTTTGTGTTCCATCACGATGACAGAATG
TGGCCGGCGGCAGTAAGCGAGCGACCCCGTGAAGCCGGTCCGGCCCGCCA
CATGAACAAGTTTCGGTCCGCTCCCTCCTTCGCGTAGTCGCATGCAGTTG
GTGCGAGACGGAAGAATGTGGCTCGTTTCAAATTCTGTCATCAGTGCGGA
GTCGCACGGTGGGAGGGGTGGTGTATTCGGCAGGGCAGCGTTTTTTAGGT
TACACGCCGTGCTTGTAAAACCGCATGCAGAGCTTTGTAGCCGTTTCACC
CGGGATGCGTTATTGCGGTGGAGTTTGCTTTCGGCAGAGATTGGCGGTGG
TGCACACACACAACTAACAAGCTGGAAACTTGTGCGTCAACACGCCAGAC
CAAAAAGCGTTTTCACCAGCCCAACCGGCGATGACGACGCCGGACGTTCA
GAAAGAGGTGTGCAATAACGACACAATCTTAAAAACGCGATGCTCCTTGA
TTGTTATTCCCGATATTATTATGTTATTTCCGAGATTATGCGCAAAGAAG
AGCAGCAACGCGGGAACGAAGAAAAACCTCCTTCGGTCTCGTAAAAAGAA
TCGCGAGCTCTTGCCGTCTCTCGAGCCCGCCCCCCCCCGCCCATTTAAAG
TCGCCCATTCAAAGTTTGAAACGGCTGGAATTAACAAGGCCGCATAAACC
CGTGTAGACTCATATATAGCCCCGAACTATTTTTCATGCACGTACATACG
CACGTACTCGGTTACTTTTCATTCGTGACTCCTGACGTCCTTCTCCCATT
CCCACCGGCGGCCGCCCCCAAACAGGAGGAGCGAGAGAGGTACGGAGGGG
GAGGCACGGGGCCCCTCCGGAACATCGCCGGCGCCTACCTCCAGCCAGAC
CAGCTCGTGGGTGGGCTGTGCGGCGGGCGCAAGGTGGCGGCGTTCGCGAT
AACGCTCACCAAGGAGGGGAACCACCTGGACGGCGCGGCTGTCCTTGCTA
CCTCCATAGGTAAGGCAGGCGCACGCCGTTGGTTGGTTGATTGGCTGGCT
TGCCCTGAAAACTGGTGTTTCGTACATGCATAAATAGATGTTGTGTTTTC
TCTGGATGCGGGGGGCGCTTGCGGCCAACCCTGTTGCGACCTGGTCGTTG
CAGGCGTTTTCACGAAAGTGTTGAGTCTTCCGTTGGGCTGATCGCCGCGT
TGGTACGTAGCATCCACAAAGACACGCACATGTACCGATAAAGCTAAATT
TACAGCCGTAGTAGTTCATGAGAAACAAAGATTCCGGCCGAGGCTGGATT
AGTTTCTCACGCGAGGCCAACGAGTATCCCTGTATTTTTTTTGTAGGTTT
AGTGTGGTGCTCTCCCCACGGAGCTCCCGTTGTGTCTCATACTCGTGTGT
ATTTTCTTCATTTGTCGCAGGCTGCCTTTCTTGAAAATGTGTTCCTTACG
AGCGGACCGGTACCATCTGTATGCGATGTCCGAAAACCACACCAAGCCAT
CTCTTCGCAATTTTATTTGAAATACAATTTCTTGGCCCCTTGACAAGGCA
AGGAGTGTGCTGCGTAGATGCGCGCCGGCGCTCCTTCTCTTTCTTTGCTC
TCTGTTGAGGGCACTCCGGTAAATCGGATCATTGTTCAACCTGTCAAACA
CACCTCGCTCGTTTTTCATATGCACTTCGAGTATTCCAATTTGATGCGAA
CCGGCTGAAAAGGTTGTTTCTCTCGTGGGACGCGCAGATAAATCCTGCGC
AACGTCGGAGTTTCTCTGCGACCTGGTGGCGTTCCTGCACGACGACATCG
GCCTGGAAACGGAGACGGTGCTGCGGCGTCTTGGCTTCCGGGTGATGCGG
CCAGGTCTCCCTCTAAACCTCGAAGATATCGAAGACAAGGTGAGGCAGCA
GCGGCAGCGGCAGTAGCAGCGTGGCGGTGGCGGCCTGGCTGGTGGACAGA
AAACGAACTCGTGGGAATGTGTGCGTTTTACCCCTGGCTTGCTTTTTGTG
TCGTCAACGGCTTGGGAGGCGCTTCATGGGATAAGAGTGTTTACAAGGGT
CGTGCATTCATCGATCGCCTGGGCAGGTGATTTGCTGCGTCCCTTGGCAA
TGTATGCTGCAACCGAACCCTTCCGCGCGTAGGCGAGATTCCCACATGTG
GCCTTTTCGTTGCTCCCGCCCCCACGTCACGGTGGCTTGGGTCGCCCAGC
AACAAAGCCTCGTAGTTGGGGATATGTGTTGGCTCTTATTGTGCCATGTC
ACGTGTGTGGTGATGGTGGTGGTGATCCTGGCGGACCTTCTTCTGTTGTC
AGACATACAGTAGCTTCAAATTTCGCCGAAAGGCGTTGGCGTTGTTCAGA
AAAATCTAGTTTTTAGGTCCGTACGCATGAACGCCTTTTACAGTCCTGGG
GAGGAACTCCTACCGCATAACCCTTTGTCGTTCCTATTGCATACCCCTCC
GTGTTCCAGCCGACAAGAGAGAGGGTGAAATCCGGCGGCTGCTGTGGCCC
GGCGGAGCTCATGAAGTTCTTCGCCTACACCCTCACGGACTACCACCGCG
TCGTGCACCTCGACACCGACGCTATCGTGAGTTGTTGTTGTTGTTGTTGG
TGGTGGTGATGGTGGTAGCAGTGGTGGCTGCTACTACTATGTTGTTGCTG
TTGCTCTTCTCACAATATTTCAAATTTTGGAGTTCCTGTGGCCCGTGGTT
CATAAGATGAAATGCTGCAGCTTTCAGAGGCAGATGCGACAATAACGAAG
AAGGTAGGAGAAAATGCACGCAGGACGGAACAACACCAGAAACCACGTGC
ATGCCTGGGTTGGTTGCTCCTTGGTTGTTGCTTGGTTGCTGAGTGCTTGT
CCGACTGGACTGGACTGCACTGCACGACCGCAAGTAGCAGCGCCAACAGC
TGACGGTACCGTGATACTGCTGTAGGGACAAAGACGTCTCTGTCTAACGC
ACGCCCAATCGTATCCTTTGTGCTTTGCAACGCGAAAACAAGAATAACCA
CCCCCCCAGTAGCAACGACAGAGGCTCCCTTGCGCAAGAAGGAGGAGACT
CTACGAACACTATATGATACAACACCTTGTGTTTTTTCGTTTTTTGCACC
AGTGTTCTTTGTCCTCTATATCATCCCACCTTCTCCACCTGGGAGGGCAA
GCGCACCGCCACATCCGAAATCCCGATCGTAGCCCCGTCAGCTCATCATC
GCTTTGGCTGACATCCCCTGCCCCTGCCCTGCGTTGGGATTGGCCAGATC
CTCCAACCGCTGGACGACCTGCTGGATGCAGAGGAGTCGTTGCTGTACAC
GACCGACGTCAACATGGGCGACGTTGAGAAGACCCCGGTGATGCCGGTGC
AGGGGGGCTTCTTCGTCGTCCGCCCCGACCCAGAGGTGTTCGAAGGCCTC
GTGCAGGTGCTTGTTATTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGC
TGCTGCTGCTTGTGCTGGTGTCTTGTTGTTGCTCGCCATGCGAACGCGGG
AGCGGGATAGGTACTGCGATCCCAGCTGCGCTCGATTCTAGACAACGACA
CCGGTAAACAAGCCTTGAGGAGAGCAGCAGCCTCGCGGATCCGCGGATAG
TCCTCGAAGCCCCCGACTCATTTTATTGTTTCCAATAGGTTGTCTCCATG
TCCCCAAAGCAACCTTTTTATAGCTGTGAATTTACGGAGGATCTCGCAGC
AGCATTGATTCCGCAAAATGGTGGTTTGGTGTGTTTTGGCTGTGCTCCCC
CGCCCCCCACCCTCGCGGAGATTACTTCACCCACCCACAACTGTCTGGCG
GCCGCTTCCTTTGTTGCGCGGGCAGGTTTTGAAAAGCACGCCATTCTCCC
GCAGCGGCTGGGGGGGCAGCATGATCGGGCTCTTCTGGGGAGGCATCACG
GTTCAGGGGATTCTGCCATACTACTACGAGGTGCGTGGGCGTTGCGGCGC
GGCGGCCGTTTTCTTTTTTTGGCTTCGCCGTTGTTCTGGAAAGAGACAGG
TCGGCCGGCCGGCTTCCCCATTTTTCCTGTTGTTTTGGGCGCAGAGCGGG
AGGAAGGGGTGGGGGGTCGAGTTTTGTCAGTTTTTCACTGATATGTACCC
TCTCTTTTTTCATCCCCCATCGACGAAACGAAAATCAAATCAACCGGAGA
AAGCGCGGGGGTATGTGCGTGTTGCGGTGTTTTTGTTTCGCCGTGCTCTG
CGTGGCGGGCCGAGGACTTACTCCCAGCCATCCACCTCCGGCGAAGAGTG
CTCCGTTTTGTTTTGCCTCGACTCAACGCGCAAAGAAAACAAACGAGCGG
GCCGGGAGCACGGCGTGGATGGTAGAAGTCAAAACCGTTCCTCCCATCAT
GGACACGAGTGGGTTTCGGACAGCAAGCGCCGTGGTTGTCGGGTGGAAAG
GTCGTCGCTCGCCGACCGACCCTTGCGACGCGAATCGATGCGAGGTTTTG
TTTCCAAGGCAGAACAATCCGTGACGATGCAGCACCCCCAATTGTCCGCC
CGCTCTGCGCAGCGTATCAATCATGGTTGGAACCTGTTGCTGTTTCCATG
CTCAATCTAACTTGCGCGCATTTTCTAGCTTGTGCACCTCTCGCTTGTTG
GCTGCGCTTTTCGTCGCCTTTGTTTTTTCGCCGTTTGTCTCCCTTGTTTT
CCTCCCGCGACCGCGCACTAAAACTAAAAAAAAACTACATCGAACAACAC
ACACCCAAAAATAAACCACAGCACCGGGCTCCACCAGGAATTACGTACCG
AGCAGTCGACAGATGCGTGTACAACAACATGGTCGACAGGCCGGACTGCC
AGGCCGCAGACGTCTCGAACATCAGGTAAATTTATGGGCTACAGTACGCG
GAGGCGTTTCTGCCACTGATCATCGTGACAACTCCCGTGCGCACAAAACG
GCATGAGCCAAGGGTTGTTTTTGCCGGTCTAGCGTGAGGATGAGAACGAA
TTGAGGTCATTTGCCGCGCAGCTGACAGCGCACCTCGCGCTATGTCTTTC
CTGTCTCTCCCGCGTCCCCCCCTCGAAGGAGTGCACACTTTACGAACTGC
CTCAAGCCGTGGAACTGTCAATACCCGCATCCAAAGCAACCTCTCTGCTC
CCGCTTGGTGGAGCGATGGTTCCAGCTACGAATTCGGGTAATGGCCTTCG
ACACAAGTTGTTTTGGGGCGGCCGTTGGGGCTTTATTGACCACGTGACAT
GTTCTGCTTTTTCTGCTTCTTGTGTCTGCGACTGGTAACTGCTGTCTTTG
TGCTGCTTGCCGGGTCGCGGCACAAGGTCGTGTATTGAGAGCCTCTGTGC
CCATCATTTTGCCCCCATGAACTCATCGTCTTGGGGAGTTCACGGTCCGA
CCAGGCGGGGTTGCTGCCAAAGCACGGCGAATGAGCCGGACAAAAAACAA
ACTTCTGTGCCTGGACGACAACATGCGCCCCTCCTGCTGTCCAATCAACA
CTTGCTGTAGTTTGGCCCATGGTGTTTCATTTCGTGTGTGGGCATTTTTT
TCCACAATTTGTTGTTTTCTTGGCTACAGTGGACGACCAACCCCCCCGTC
ATCGCATTCCACCCTTTTTTCCCTGCCTTCTTTCTTGCTTACCTCGACCA
GGCGGAGGGCGCGCTGGGGCTGCTGCCCACCGCGCCCTGCCCGACCGGGT
TCGGGTCTGCGTACAACCCGATGACGCTTGTCGCTCCCAAGGCTGGCGGA
TCACTCTCCGAAGGGCCGTAGCGGGACGAGGGGCTTTTGCTTGCGCGAAT
GGATGGGGATCATCAGCACACTTGGTATGGATTGTAGTGCTGTTTGGTTG
TGTAGAGTACTCTAGACCGGTGTGATTGGTTTAATTTGGCCATCCCCGCT
CCTGGTCGAACGGGACGGGACATTCTGCAAATGAGATCAATGAGAAGCAA
TCGAGCCCTTCCCCCACACTGTTTGTGCCTGCTGTGAGAGGTTCGGAGCG
CAAGTACCGAGGGGGGAGGGCTTATTTGGTCGGCGAGAGAGGGAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig106:60886..67080+

>mRNA_C-linearis_contig106.969.1 ID=mRNA_C-linearis_contig106.969.1|Name=mRNA_C-linearis_contig106.969.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at C-linearis_contig106:60886..67080+ (Chordaria linearis ClinC8C monoicous)
ATGCGGCCAGGTCTCCCTCTAAACCTCGAAGATATCGAAGACAAGATGCG
GCCAGGTCTCCCTCTAAACCTCGAAGATATCGAAGACAAGCCGACAAGAG
AGAGGGTGAAATCCGGCGGCTGCTGTGGCCCGGCGGAGCTCATGAAGTTC
TTCGCCTACACCCTCACGGACTACCACCGCGTCGTGCACCTCGACACCGA
CGCTATCCCGACAAGAGAGAGGGTGAAATCCGGCGGCTGCTGTGGCCCGG
CGGAGCTCATGAAGTTCTTCGCCTACACCCTCACGGACTACCACCGCGTC
GTGCACCTCGACACCGACGCTATCATCCTCCAACCGCTGGACGACCTGCT
GGATGCAGAGGAGTCGTTGCTGTACACGACCGACGTCAACATGGGCGACG
TTGAGAAGACCCCGGTGATGCCGGTGCAGGGGGGCTTCTTCGTCGTCCGC
CCCGACCCAGAGGTGTTCGAAGGCCTCGTGCAGATCCTCCAACCGCTGGA
CGACCTGCTGGATGCAGAGGAGTCGTTGCTGTACACGACCGACGTCAACA
TGGGCGACGTTGAGAAGACCCCGGTGATGCCGGTGCAGGGGGGCTTCTTC
GTCGTCCGCCCCGACCCAGAGGTGTTCGAAGGCCTCGTGCAGGTTTTGAA
AAGCACGCCATTCTCCCGCAGCGGCTGGGGGGGCAGCATGATCGGGCTCT
TCTGGGGAGGCATCACGGTTCAGGGGATTCTGCCATACTACTACGAGGTT
TTGAAAAGCACGCCATTCTCCCGCAGCGGCTGGGGGGGCAGCATGATCGG
GCTCTTCTGGGGAGGCATCACGGTTCAGGGGATTCTGCCATACTACTACG
AGCACCGGGCTCCACCAGGAATTACGTACCGAGCAGTCGACAGATGCGTG
TACAACAACATGGTCGACAGGCCGGACTGCCAGGCCGCAGACGTCTCGAA
CATCAGCACCGGGCTCCACCAGGAATTACGTACCGAGCAGTCGACAGATG
CGTGTACAACAACATGGTCGACAGGCCGGACTGCCAGGCCGCAGACGTCT
CGAACATCAGGAGTGCACACTTTACGAACTGCCTCAAGCCGTGGAACTGT
CAATACCCGCATCCAAAGCAACCTCTCTGCTCCCGCTTGGTGGAGCGATG
GTTCCAGCTACGAATTCGGGAGTGCACACTTTACGAACTGCCTCAAGCCG
TGGAACTGTCAATACCCGCATCCAAAGCAACCTCTCTGCTCCCGCTTGGT
GGAGCGATGGTTCCAGCTACGAATTCGGGCGGAGGGCGCGCTGGGGCTGC
TGCCCACCGCGCCCTGCCCGACCGGGTTCGGGTCTGCGTACAACCCGATG
ACGCTTGTCGCTCCCAAGGCTGGCGGATCACTCTCCGAAGGGCCGTAGGC
GGAGGGCGCGCTGGGGCTGCTGCCCACCGCGCCCTGCCCGACCGGGTTCG
GGTCTGCGTACAACCCGATGACGCTTGTCGCTCCCAAGGCTGGCGGATCA
CTCTCCGAAGGGCCGTAG
back to top